b4e2679872
Remove jetbrains
2021-09-13 21:15:23 -04:00
a0cd83398b
Bump test java to 16
2021-09-13 20:52:14 -04:00
3ccadd636e
Merge branch 'master' into 2958-consistent-error-handling
2021-09-13 19:38:57 -04:00
876768718d
Remove log
2021-09-13 11:29:36 -07:00
3ca73f1067
Merge remote-tracking branch 'origin/2958-consistent-error-handling' into 2958-consistent-error-handling
2021-09-13 11:26:39 -07:00
46936e1704
Fixed code formatting and better way of fixing issue
2021-09-13 11:26:21 -07:00
5f86370c98
Merge branch 'master' into conditional-bug
2021-09-13 13:04:10 -04:00
59c8765e6a
Add implementation to validate conditional URLs post-transaction
2021-09-13 13:03:44 -04:00
eee7d7e455
code cleanup ( #2986 )
...
* failed attempt to get it to work
* Use simplified FhirContext.forCached methods
* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/context/FhirContext.java
Co-authored-by: James Agnew <jamesagnew@gmail.com>
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2021-09-13 03:09:18 +00:00
5554431146
Avoid dead SearchParameter links in CapabilityStatement ( #2790 )
...
* Avoid dead SearchParameter links in CapabilityStatement
* Resolve fixmes
* Build fix
* Test fix
* Test fix
* Test fix
* Work on metadata
* Fixes
* Test fixes
* Test fix
* Test fix
* Test fixes
* Test fix
* Work on test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fix
* Fix params
* Resolve fixme
* Adjust changelogs
* Version bump to 5.6.0-PRE7
* Add license header
* Bump version to 5.6.0-PRE5-SNAPSHOT
2021-09-11 18:27:18 -04:00
94f157a4ac
Start refactoring of basetransactionprocessor
2021-09-11 15:13:05 -04:00
b224463d35
add broken test
2021-09-10 22:46:35 -04:00
a02a9e0254
Merge branch 'master' into 2958-consistent-error-handling
2021-09-10 17:02:31 -07:00
2163e6e548
Fixed error that previous fix caused
2021-09-10 12:36:11 -07:00
77845d66f7
Improved code formatting
2021-09-10 10:54:33 -07:00
5b6ac3e6d6
Refactor to eliminate duplication
2021-09-10 11:22:04 -04:00
d6d862015b
Address concerns in review for issue 2975
2021-09-10 15:46:27 +02:00
d7fde3f984
Simplify implementation. Add tests.
2021-09-10 09:32:47 -04:00
cfc0c7e6b3
Add test for validation of multiple hosts in ElasticsearchHibernatePropertiesBuilder
2021-09-10 11:44:15 +02:00
032a9155f0
Merge branch 'master' of https://github.com/hapifhir/hapi-fhir into issue_2975
2021-09-10 09:11:06 +02:00
836948010f
Fixes issue ( #2958 ) where Procedure?patient caused inconsistent results and ensured that such requests gave http 400
2021-09-09 16:10:09 -07:00
ed325e9e11
Enable multiple hosts in ElasticsearchHibernatePropertiesBuilder
2021-09-10 00:14:21 +02:00
a4ba65a9fd
Don't wrap known errors
2021-09-09 12:27:34 -04:00
d5f3b5db18
Merge branch 'master' into fix-batch-pool-breaking
2021-09-09 11:28:44 -04:00
41d5e2b8e7
Add failing test, implementation
2021-09-09 10:50:54 -04:00
661ca02a6a
revert clobbered code
2021-09-09 09:28:01 -04:00
c6aa21b915
Enable empty username and password in ElasticsearchHibernatePropertiesBuilder
2021-09-09 12:55:04 +02:00
5bc571d97d
fix test
2021-09-09 01:00:12 -04:00
519244a2ea
unit test passes
2021-09-08 19:14:50 -04:00
0ccd71faf8
Merge pull request #2963 from hapifhir/custom-elastic-index
...
Custom elastic index
2021-09-08 14:29:58 -04:00
fbf6b35d2e
Merge branch 'master' into custom-elastic-index
2021-09-08 08:49:26 -04:00
5d5c45e357
Add whitespace
2021-09-08 08:49:19 -04:00
f04cf02be7
Merge branch 'master' into issue-2901-npe-in-bundle-transaction
2021-09-08 08:45:47 -04:00
c2414d2cae
Throw error if misconfigured
2021-09-07 18:35:59 -04:00
436c74616b
Merge branch 'master' into custom-elastic-index
2021-09-07 18:19:35 -04:00
34075911ce
Merge branch 'master' into jr-20210831-contained-chained-search
2021-09-07 17:28:24 -04:00
207558dba3
code review feedback
2021-09-07 17:27:22 -04:00
2dcc4f534f
Resolve Search Causing JOINs on HFJ_RESOURCE Checking RES_TYPE and RES_DELETED_AT Columns ( #2964 )
2021-09-07 19:38:08 +00:00
a3743fbcca
Add utility method
2021-09-07 14:21:50 -04:00
3ec47cb0ba
Bump version as we break the localcontainerentitymanagerfactory bean constructors args
2021-09-07 13:58:22 -04:00
6a2a5d5097
Merge branch 'master' into custom-elastic-index
2021-09-07 13:56:56 -04:00
eabe3e7c74
Merge branch 'master' into custom-elastic-index
2021-09-07 13:56:44 -04:00
ecd93c9e8a
Add changelog
2021-09-07 13:54:28 -04:00
16752f393c
Finalize implementation
2021-09-07 13:33:03 -04:00
4d7f53851c
issue-2901 cleanup of code/imports
2021-09-07 12:08:32 -04:00
69287b6bc3
issue-2901 review fixes - moving methods to idhelperservice
2021-09-07 11:52:11 -04:00
d3d7c6e97e
Merge branch 'master' into npe_fix
2021-09-07 17:36:05 +02:00
35aaa98431
Merge branch 'master' into 2849_add_new_mdm_param
2021-09-07 11:27:49 -04:00
ca2a1ff9df
Add HsTest replicating boot failure
2021-09-07 10:08:17 -04:00
190ca7a2b5
tests for longer chains
2021-09-07 09:40:49 -04:00
ad5d56172a
Return 2 unused beans
2021-09-07 09:11:48 -04:00
a1733ed3eb
cleanup
2021-09-06 13:55:19 -04:00
4281648a33
extract some methods for readability
2021-09-06 13:52:10 -04:00
ea153334fb
extract some methods for readability
2021-09-06 13:50:09 -04:00
710fb3bd89
wip
2021-09-05 00:04:13 -04:00
f0a8659653
Fix template and setup static prefix as sample
2021-09-04 23:55:03 -04:00
cdb7ffb0d3
Fixed NPE in PidToIBaseResourceProcessor
2021-09-04 01:44:07 +02:00
c63a503841
Updated link processing for MDM events
2021-09-03 16:29:26 -04:00
64270a51e0
issue-2901 review fixes
2021-09-03 15:36:42 -04:00
0dad28fb33
tidy up
2021-09-03 15:02:19 -04:00
346e29920a
Issue 2927 convert mdm clear to spring batch ( #2929 )
...
* initial roughout of mdm clear batch job
* still roughing out classes
* finished first draft of reader
* most tests passing now
* all tests pass. now FIXMEs
* FIXMEs done. Time for regression.
* fix test
* changelog and docs
* fix test
* pre-review cleanup
* version bump
* move spring autowire deps for cdr
* move spring autowire deps for cdr
* finally got beans working phew
* rearrange method calls so persistence module can perform clear operation on its own
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* review feedback
* review feedback
* Remove inheritance
* fix beans
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2021-09-03 14:58:19 -04:00
8a9e4e4328
force the resource table to be the root of the query if we might be traversing a contained reference
2021-09-03 11:26:46 -04:00
b29a61df40
update TestUtil to test Embeddable classes, not just Entity classes
2021-09-03 10:40:54 -04:00
78c71ce761
issue-2901 fix tests
2021-09-03 08:38:19 -04:00
5604cabbe8
add tests for qualifiers
2021-09-03 07:45:57 -04:00
0edf77d214
clean up a bit
2021-09-03 07:31:49 -04:00
fed755523f
Resolve - Avoid JOINs on HFJ_RESOURCE Checking RES_TYPE and RES_DELETED_AT Columns ( #2944 )
...
* Added the start of a new Unit Test.
* Renamed the Unit Test.
* Fleshed out the Unit Test with additional Resource properties.
* Tweaked the Unit Test more but it is still not working as desired so more changes will be needed to replicate the specific scenario...
* More Unit Test tweaks...
* More Unit Test tweaks.
* More tweaks...
* Reproduced the problem.
* Finally, a Failing Unit Test that exposes the problem.
* Fixed the Unit Test by changing how SearchBuilder manipulates underscore params.
* Added another test scenario.
* Added a third search test.
* Removed the third search example since it was not effective.
* Test fix
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-09-03 05:28:04 -04:00
2ed7019a6c
Add another test
2021-09-03 00:08:12 -04:00
8651990cac
Fixed class cast issue
2021-09-02 23:04:30 -04:00
56890dba93
Reformatted the code
2021-09-02 22:26:55 -04:00
be96adb694
Merge branch 'poc-chained-not-bug' into ft-search-with-not-modifier
...
# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/search/builder/QueryStack.java
# hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderSearchModifierR4Test.java
2021-09-02 22:07:22 -04:00
b81a61e465
Fixed :not modifier issue for the resource
2021-09-02 21:52:37 -04:00
39f18e1897
Merge branch 'master' into 2948
2021-09-02 17:24:15 -04:00
c28f5e75b3
update TestUtil to recursively scan down into subpackages
2021-09-02 15:35:40 -04:00
9fd2746113
fixed the double chain with contained resource second case
2021-09-02 14:38:30 -04:00
26ff15f939
Revert "Fix search of :not modifier"
2021-09-02 14:33:30 -04:00
6c700f9432
Add POC for failure
2021-09-02 13:33:27 -04:00
6f82e3568c
issue-2901 remove debug code
2021-09-02 13:20:38 -04:00
49124c298d
issue-2901 fixing test
2021-09-02 13:15:24 -04:00
ff7433edd7
issue-2901 cleaning up test contexts
2021-09-02 11:43:12 -04:00
cbfcc02a92
issue-2901 removing cruft and cleaning up
2021-09-02 11:07:06 -04:00
1a7b101d03
Merge branch 'master' into issue-2901-npe-in-bundle-transaction
2021-09-02 10:13:04 -04:00
0286eb5278
issue-2901 updated some documentation and added support for autocreated placeholder / autoversioned references at paths when in transactios and have not been created yet
2021-09-02 09:15:39 -04:00
b1d192637d
Merge pull request #2928 from hapifhir/ft-search-with-not-modifier
...
Fix search of :not modifier
2021-09-02 08:41:16 -04:00
6e389d6f59
Merge branch 'memorycacheservicefix' of https://github.com/theGOTOguy/hapi-fhir into memorycacheservicefix
2021-09-01 15:05:32 -04:00
0724e652bb
Refactor to prevent adding additional signatures to expungeEverythingByType.
2021-09-01 15:04:31 -04:00
3789bc0f75
Merge branch 'master' into memorycacheservicefix
2021-09-01 13:55:03 -04:00
2e2048ce52
Add more test cases, not passing
2021-09-01 13:37:45 -04:00
453ef7ec1c
Merge branch 'master' into 2935_Search_with_trailing_percent_sign
2021-09-01 11:33:26 -04:00
7001272e4b
Clear out the memory cache whenever we call the ExpungeEverythingService.
2021-09-01 01:26:47 -04:00
444bc5f330
Merge branch 'master' into memorycacheservicefix
2021-08-31 20:26:31 -04:00
51fe5ec5e7
Remove extra update from test.
2021-08-31 20:16:22 -04:00
44b0d3e9e7
Fixed $lookup with displayLanguage caching issue ( #2932 )
...
* Fixed $lookup with displayLanguage caching issue
* Added changelog and optimized the test cases
2021-08-31 22:18:40 +00:00
28e3265b6c
Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning
2021-08-31 15:52:24 -04:00
a1fbeeacaa
[2935] Escape "%" in like expression
2021-08-31 15:11:06 -04:00
c1dc342659
more logs
2021-08-31 15:06:51 -04:00
ef4adda527
failing tests
2021-08-31 14:53:05 -04:00
d75af14d29
Merge branch 'master' into double-conditionalCreateIssue
2021-08-31 14:25:51 -04:00
765b18013c
Merge branch 'master' into fix-intermittent-in-tests
2021-08-31 14:22:22 -04:00
710343a599
Use ForcedId to get current ValueSet version
2021-08-31 13:33:39 -04:00
825ac1e81c
Chnge privacy
2021-08-31 12:58:00 -04:00
b1515b5963
Lazy load executor so that tests work safely.
2021-08-31 12:57:45 -04:00
c9f5dfd6d3
Swap to SyncTaskExecutor
2021-08-31 11:33:06 -04:00
2f6d8c7b35
Revert logging
2021-08-31 10:56:31 -04:00
0f6ae50105
Fix bug in hashToSearchMap
2021-08-31 10:47:23 -04:00
a38b791141
issue-2901 added db access method for existence and setting the version to 1 if createplaceholders is true and object does not exist in db
2021-08-31 10:12:40 -04:00
7534ab58f3
Add failing test
2021-08-31 09:58:38 -04:00
f04ff3fd0a
Adds failing test for expunging and recreating a Patient with a profile in its meta field.
2021-08-31 02:04:27 -04:00
e7c6ce920d
issue-2901 checkin to test
2021-08-30 10:29:59 -04:00
3f128be34d
Update the code
2021-08-28 13:29:00 -04:00
88d535c608
Update the comment
2021-08-28 13:27:40 -04:00
9bdef1a9fa
Fix search of :not modifier
2021-08-28 13:24:09 -04:00
513bc387e9
Remove essentially duplicate bean definition
2021-08-27 13:20:29 -04:00
faf4dfd056
fix other test class
2021-08-27 12:04:56 -04:00
c2c6e0b440
Force the caller to run the bundle task if we are operating with <= 1 pool size
2021-08-27 12:01:10 -04:00
f63f12e976
Use boolean parameter as DAO misinterprets RequestDetails
2021-08-27 10:57:06 -04:00
3fbae63968
Merge master
2021-08-26 13:09:11 -04:00
0304ea2d62
Add requested test
2021-08-26 12:03:00 -04:00
426315f589
Consider last stored ValueSet not necessarily current version anymore.
2021-08-26 10:40:10 -04:00
99cd865174
test
2021-08-26 08:47:45 -04:00
646592b1b7
issue-2901 some refactoring
2021-08-25 15:56:55 -04:00
090a8b0821
Impl displayLanguage for $lookup ( #2908 )
...
* Impl displayLanguage for $lookup - first cut
* Added original lookupCode method
* Added original lookupCode method to IFhirResourceDaoCodeSystem
* Added more test cases and changelog
2021-08-25 14:47:10 -04:00
b51c722755
stashing minor refactors
2021-08-25 10:41:58 -04:00
37ad73a422
Bump PRE version so we don't conflict downstream
2021-08-23 15:42:18 -04:00
1acaf325c5
Merge branch 'master' into rel_5_5_0
2021-08-23 14:50:29 -04:00
ee9c630228
Merge branch 'master' into issue-2901-npe-in-bundle-transaction
2021-08-23 12:05:31 -04:00
3ebb374059
Avoid redundant resource type selector in _id query ( #2909 )
...
* Fixed
* Add more tests
* Test fixes
2021-08-23 09:04:51 -04:00
4c2ae513d8
Process bundle batch in parallel ( #2905 )
...
* Process batch in parallel
* Added a test case
* Added more test cases
* Default the bundle batch to single thread.
* Tried transaction before multi-thread.
* Updated the test cases
* Update based on review comments and add changelog
* Updated the changelog
* Restore QueueCapacity
2021-08-20 21:14:08 -04:00
3135e82ea7
Strip jetbrains annotations
2021-08-20 18:48:34 -04:00
35440d3b1b
Merge pull request #2900 from hapifhir/bump-hapi-core-for-5-5-0
...
Bump hapi core for 5 5 0
2021-08-20 18:03:29 -04:00
f3fe7130c0
flipped case for code validation test
2021-08-20 14:36:37 -04:00
3cfc41f840
updating all convertor calls to not failfast
2021-08-20 14:11:20 -04:00
770b773761
JPA conversion lib fixes
2021-08-20 11:08:14 -04:00
c2e3401185
Move display name
2021-08-19 17:25:51 -04:00
3556299332
Add another failing Test
2021-08-19 17:25:15 -04:00
77c99e47c1
TIL that anyString() wont match nulls in Mockito, but any() will
2021-08-19 15:15:51 -04:00
19d181989c
Add another failing test
2021-08-19 14:52:48 -04:00
85517c47e2
Include includes on revincludes ( #2902 )
...
* Include includes on revincludes
2021-08-19 12:31:29 -04:00
07937e4431
Start with failing test
2021-08-19 10:35:14 -04:00
367b338d85
Updating HAPI to use latest core lib changes.
2021-08-18 11:06:14 -04:00
1f7fb52d91
set version map to check all partitions
2021-08-17 16:45:12 -04:00
cf917d0f82
Version Bump
2021-08-15 16:54:38 -04:00
4920f0a15d
Don't create designation of all components are empty ( #2891 )
...
* Don't create designation of all components are empty
* Fixed typo
2021-08-13 11:01:50 -04:00
669cf05b30
Modify SearchParameterMap toNormalizedQueryString to include value of _contained parameter
2021-08-12 14:25:12 -04:00
fb855620da
Save version collections also when version is not made current.
...
Add test covering bug.
2021-08-11 12:49:54 -04:00
41ec1e03c0
Merge pull request #2880 from hapifhir/weird-contained-issue
...
Contained Issue
2021-08-11 08:27:54 -04:00
e311835e8d
Revert test
2021-08-10 18:44:42 -04:00
a5c850b119
Pre-review cleaning
2021-08-10 17:37:24 -04:00
daa3bc773e
remove dummy test
2021-08-10 16:46:03 -04:00
fe98162616
Add changelog
2021-08-10 14:59:03 -04:00
Tadgh
Tadgh
Justin Dar
Ken Stevens
James Agnew
jdar8
juan.marchionatto
Dušan Markovič
Jason Roberts
Kevin Dougan SmileCDR
leif stawnyczy
Jari Maijenburg
Nick Goupinets
Vadim Karantayer
Frank Tao
VK-SMILECDR
Ben Li-Sauerwine
katie_smilecdr
Frank Tao
markiantorno