be96adb694
Merge branch 'poc-chained-not-bug' into ft-search-with-not-modifier
...
# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/search/builder/QueryStack.java
# hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderSearchModifierR4Test.java
2021-09-02 22:07:22 -04:00
b81a61e465
Fixed :not modifier issue for the resource
2021-09-02 21:52:37 -04:00
39f18e1897
Merge branch 'master' into 2948
2021-09-02 17:24:15 -04:00
c28f5e75b3
update TestUtil to recursively scan down into subpackages
2021-09-02 15:35:40 -04:00
9fd2746113
fixed the double chain with contained resource second case
2021-09-02 14:38:30 -04:00
26ff15f939
Revert "Fix search of :not modifier"
2021-09-02 14:33:30 -04:00
6c700f9432
Add POC for failure
2021-09-02 13:33:27 -04:00
6f82e3568c
issue-2901 remove debug code
2021-09-02 13:20:38 -04:00
49124c298d
issue-2901 fixing test
2021-09-02 13:15:24 -04:00
ff7433edd7
issue-2901 cleaning up test contexts
2021-09-02 11:43:12 -04:00
cbfcc02a92
issue-2901 removing cruft and cleaning up
2021-09-02 11:07:06 -04:00
1a7b101d03
Merge branch 'master' into issue-2901-npe-in-bundle-transaction
2021-09-02 10:13:04 -04:00
0286eb5278
issue-2901 updated some documentation and added support for autocreated placeholder / autoversioned references at paths when in transactios and have not been created yet
2021-09-02 09:15:39 -04:00
b1d192637d
Merge pull request #2928 from hapifhir/ft-search-with-not-modifier
...
Fix search of :not modifier
2021-09-02 08:41:16 -04:00
6e389d6f59
Merge branch 'memorycacheservicefix' of https://github.com/theGOTOguy/hapi-fhir into memorycacheservicefix
2021-09-01 15:05:32 -04:00
0724e652bb
Refactor to prevent adding additional signatures to expungeEverythingByType.
2021-09-01 15:04:31 -04:00
3789bc0f75
Merge branch 'master' into memorycacheservicefix
2021-09-01 13:55:03 -04:00
2e2048ce52
Add more test cases, not passing
2021-09-01 13:37:45 -04:00
453ef7ec1c
Merge branch 'master' into 2935_Search_with_trailing_percent_sign
2021-09-01 11:33:26 -04:00
7001272e4b
Clear out the memory cache whenever we call the ExpungeEverythingService.
2021-09-01 01:26:47 -04:00
444bc5f330
Merge branch 'master' into memorycacheservicefix
2021-08-31 20:26:31 -04:00
51fe5ec5e7
Remove extra update from test.
2021-08-31 20:16:22 -04:00
44b0d3e9e7
Fixed $lookup with displayLanguage caching issue ( #2932 )
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* Fixed $lookup with displayLanguage caching issue
* Added changelog and optimized the test cases
2021-08-31 22:18:40 +00:00
a1fbeeacaa
[2935] Escape "%" in like expression
2021-08-31 15:11:06 -04:00
c1dc342659
more logs
2021-08-31 15:06:51 -04:00
ef4adda527
failing tests
2021-08-31 14:53:05 -04:00
d75af14d29
Merge branch 'master' into double-conditionalCreateIssue
2021-08-31 14:25:51 -04:00
765b18013c
Merge branch 'master' into fix-intermittent-in-tests
2021-08-31 14:22:22 -04:00
825ac1e81c
Chnge privacy
2021-08-31 12:58:00 -04:00
b1515b5963
Lazy load executor so that tests work safely.
2021-08-31 12:57:45 -04:00
c9f5dfd6d3
Swap to SyncTaskExecutor
2021-08-31 11:33:06 -04:00
2f6d8c7b35
Revert logging
2021-08-31 10:56:31 -04:00
0f6ae50105
Fix bug in hashToSearchMap
2021-08-31 10:47:23 -04:00
a38b791141
issue-2901 added db access method for existence and setting the version to 1 if createplaceholders is true and object does not exist in db
2021-08-31 10:12:40 -04:00
7534ab58f3
Add failing test
2021-08-31 09:58:38 -04:00
f04ff3fd0a
Adds failing test for expunging and recreating a Patient with a profile in its meta field.
2021-08-31 02:04:27 -04:00
e7c6ce920d
issue-2901 checkin to test
2021-08-30 10:29:59 -04:00
3f128be34d
Update the code
2021-08-28 13:29:00 -04:00
88d535c608
Update the comment
2021-08-28 13:27:40 -04:00
9bdef1a9fa
Fix search of :not modifier
2021-08-28 13:24:09 -04:00
513bc387e9
Remove essentially duplicate bean definition
2021-08-27 13:20:29 -04:00
faf4dfd056
fix other test class
2021-08-27 12:04:56 -04:00
c2c6e0b440
Force the caller to run the bundle task if we are operating with <= 1 pool size
2021-08-27 12:01:10 -04:00
0304ea2d62
Add requested test
2021-08-26 12:03:00 -04:00
99cd865174
test
2021-08-26 08:47:45 -04:00
646592b1b7
issue-2901 some refactoring
2021-08-25 15:56:55 -04:00
090a8b0821
Impl displayLanguage for $lookup ( #2908 )
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* Impl displayLanguage for $lookup - first cut
* Added original lookupCode method
* Added original lookupCode method to IFhirResourceDaoCodeSystem
* Added more test cases and changelog
2021-08-25 14:47:10 -04:00
b51c722755
stashing minor refactors
2021-08-25 10:41:58 -04:00
37ad73a422
Bump PRE version so we don't conflict downstream
2021-08-23 15:42:18 -04:00
1acaf325c5
Merge branch 'master' into rel_5_5_0
2021-08-23 14:50:29 -04:00
ee9c630228
Merge branch 'master' into issue-2901-npe-in-bundle-transaction
2021-08-23 12:05:31 -04:00
3ebb374059
Avoid redundant resource type selector in _id query ( #2909 )
...
* Fixed
* Add more tests
* Test fixes
2021-08-23 09:04:51 -04:00
4c2ae513d8
Process bundle batch in parallel ( #2905 )
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* Process batch in parallel
* Added a test case
* Added more test cases
* Default the bundle batch to single thread.
* Tried transaction before multi-thread.
* Updated the test cases
* Update based on review comments and add changelog
* Updated the changelog
* Restore QueueCapacity
2021-08-20 21:14:08 -04:00
3135e82ea7
Strip jetbrains annotations
2021-08-20 18:48:34 -04:00
35440d3b1b
Merge pull request #2900 from hapifhir/bump-hapi-core-for-5-5-0
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Bump hapi core for 5 5 0
2021-08-20 18:03:29 -04:00
f3fe7130c0
flipped case for code validation test
2021-08-20 14:36:37 -04:00
3cfc41f840
updating all convertor calls to not failfast
2021-08-20 14:11:20 -04:00
770b773761
JPA conversion lib fixes
2021-08-20 11:08:14 -04:00
c2e3401185
Move display name
2021-08-19 17:25:51 -04:00
3556299332
Add another failing Test
2021-08-19 17:25:15 -04:00
77c99e47c1
TIL that anyString() wont match nulls in Mockito, but any() will
2021-08-19 15:15:51 -04:00
19d181989c
Add another failing test
2021-08-19 14:52:48 -04:00
85517c47e2
Include includes on revincludes ( #2902 )
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* Include includes on revincludes
2021-08-19 12:31:29 -04:00
07937e4431
Start with failing test
2021-08-19 10:35:14 -04:00
367b338d85
Updating HAPI to use latest core lib changes.
2021-08-18 11:06:14 -04:00
1f7fb52d91
set version map to check all partitions
2021-08-17 16:45:12 -04:00
cf917d0f82
Version Bump
2021-08-15 16:54:38 -04:00
4920f0a15d
Don't create designation of all components are empty ( #2891 )
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* Don't create designation of all components are empty
* Fixed typo
2021-08-13 11:01:50 -04:00
669cf05b30
Modify SearchParameterMap toNormalizedQueryString to include value of _contained parameter
2021-08-12 14:25:12 -04:00
fb855620da
Save version collections also when version is not made current.
...
Add test covering bug.
2021-08-11 12:49:54 -04:00
41ec1e03c0
Merge pull request #2880 from hapifhir/weird-contained-issue
...
Contained Issue
2021-08-11 08:27:54 -04:00
e311835e8d
Revert test
2021-08-10 18:44:42 -04:00
a5c850b119
Pre-review cleaning
2021-08-10 17:37:24 -04:00
daa3bc773e
remove dummy test
2021-08-10 16:46:03 -04:00
fe98162616
Add changelog
2021-08-10 14:59:03 -04:00
71ed25b77c
Add commetn for juan
2021-08-10 14:58:47 -04:00
1cb6f490d6
Add dummy test. NOTE, remove before merge
2021-08-10 14:58:38 -04:00
2f42391ba8
wip
2021-08-10 14:58:30 -04:00
e402804049
Add test json files
2021-08-10 14:58:24 -04:00
8f200c1819
Add a failing test
2021-08-10 14:58:17 -04:00
35afa8bbfa
tidy
2021-08-10 14:57:51 -04:00
4c154951e2
Fully fleshed test, partial refactor
2021-08-10 14:56:57 -04:00
1e0f843d6c
2852 - Simplify java mail code ( #2874 )
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* testing
* [2852] adding SimpleJavaEmail
* [2852] refactor email sender code
* [2852] dependency cleanup
* [2852] add missing dependency
* [2852] add missing spring framework test dependency
* [2852] add change log
* [2852] add change log
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2852-simplify-java-mail-code.yaml
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* [2852] minor test code cleanup
* [2852] add more tests
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-08-09 15:59:47 -04:00
4fadc62066
Bump Hapi Version
2021-08-06 13:44:04 -04:00
0a303a0e11
Add MDM expansion by golden pid
2021-08-06 13:22:08 -04:00
3c598e2ff8
Fix loinc designation issue with FormalName ( #2865 )
...
* Fix loinc designation issue with FormalName
* Changed Loinc designation name to 'FullySpecifiedName'
2021-08-06 10:59:01 -04:00
e8e49f3ffa
Pick d85a4e5ec2 for release branch
2021-08-04 16:34:48 -04:00
d85a4e5ec2
Hack to fix a weird IOOB error we can't reproduce.
2021-08-04 16:08:38 -04:00
cb68c59fb5
Remove validation in code which will never reached for the conditions.
2021-08-03 15:39:02 -04:00
45549d2bb9
Fix broken ITs.
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Add error message for non-snapshot upload with current version = false combination.
2021-08-03 14:11:14 -04:00
1ff1954cba
Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control
2021-07-30 11:20:23 -04:00
4e8b1719f3
Add test for fixed use case
2021-07-30 10:48:10 -04:00
f5dfc3a5ed
New reindex spring batch operation ( #2845 )
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* first sweep to add new $reindex job
* first cut done. next up integration test.
* start roughing out reindex everything
* Failing test
* test passes
* add BundleUtil helper method
* rough in processEverything
* rough in processEverything
* fix mock test
* merge master
* Make BaseJpaTest.mySrd lenient.
* fix test
* reindex everything works with FIXMEs
* reindex everything more tests
* moar tests
* moar tests
* fix test
* fix test
* fix regression and fix test
* fix test cycle
* fixme
* fix test
* test provider layer
* reindex everything partition aware
* yay last fixme!
* run reindex in partitioned threads
* add fixmes for areas that require extra testing
* added transaction and log message
* manual integration testing
* changelog
* reindex all partitions
* bump hapi version
* fix test
* moar test
* pre-review cleanup
* fix javadoc
* review feedback
* review feedback
* review feedback
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2845-reindex-operation.yaml
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* review feedback
* review feedback
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/ResourceSearch.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-server/src/main/java/ca/uhn/fhir/rest/api/server/storage/IDeleteExpungeJobSubmitter.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
2021-07-29 19:18:49 -04:00
264dfee099
Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control
2021-07-29 16:21:56 -04:00
1fcb36d84a
Fix implementation to work also for use case where version is being updated.
...
Use property instead of parameter.
2021-07-29 15:54:00 -04:00
f957661dda
Patient ID Partition Mode should support conditional create ( #2828 )
...
* Fixes
* Test fix
* Add changelog
* Test fixes
* Test fixes
* Docs tweak
* Partitioning fixes
* Import fix
* Fix test data
2021-07-26 14:18:58 -04:00
6bbb403fd1
When Client Id Strategy is set to NOT_ALLOWED, permit system requests to create resources ( #2827 )
...
* resolved 2826
* fix regression
2021-07-23 19:10:19 -04:00
ad6f7a204c
Fix changelog syntax. Merge current master.
2021-07-22 10:49:16 -04:00
a5e6674e84
Version bump to 5.5.0-PRE7-SNAPSHOT
2021-07-22 08:41:16 -04:00
d78fef6732
Fix NPE in IdHelperService ( #2819 )
2021-07-22 08:34:28 -04:00
Frank Tao
VK-SMILECDR
Vadim Karantayer
Jason Roberts
Tadgh
Tadgh
leif stawnyczy
Ben Li-Sauerwine
katie_smilecdr
Frank Tao
Ken Stevens
James Agnew
markiantorno
juan.marchionatto
Michael Buckley