Commit Graph

2388 Commits

Author SHA1 Message Date
Grahame Grieve ae250c4053 fix npe validating code system 2024-05-27 23:55:58 +10:00
Grahame Grieve d279468008 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-27 23:00:42 +10:00
Grahame Grieve b766cffdb1 v2 tests, support discriminator by position, and don't check type characteristics for unknown types 2024-05-26 07:56:16 -05:00
markiantorno a32e28e4e3 Updating version to: 6.3.11-SNAPSHOT and incrementing test cases dependency. 2024-05-25 23:37:56 +00:00
markiantorno d8781b8b76 Release: v6.3.10
## Validator Changes

* Fix issue validating codes with + in them
* Fix (well, hack) R4 vital signs issue with component units

## WHO I18n Project

* QA on i18n constants - remove spurious entries, add anything missing
* Remove test case for i18n coverage
* Generate properties translation files without blank entries
* Add transifex configuration
* Fix up .po file generation so that POEdit is supported, and remove duplicate constants (#1592)
* Most strings translated to Dutch, unchecked.
* Add utility to infer locale from region code

## Other code changes

* Remove Accept-Charset header
* Fix typos around CODESYSTEM_CONTENT_COMPLETE
***NO_CI***
2024-05-25 22:53:24 +00:00
Grahame Grieve a8ba174383 update cache 2024-05-25 15:12:18 -05:00
Grahame Grieve 853b4fd9ca stable baseline 2024-05-25 04:25:47 -05:00
Grahame Grieve 34c8c262bc more i18n development 2024-05-25 03:57:56 -05:00
markiantorno 0d0687f1f1 Updating version to: 6.3.10-SNAPSHOT and incrementing test cases dependency. 2024-05-22 05:52:30 +00:00
markiantorno c47f248fa4 Release: v6.3.9
## Validator Changes

* remove "LOINC 2711-0 Oxygen saturation in Venous blood" from the list in the validator that checks whether an observation is a vital sign

## WHO I18n Project

* fix value set summary line display
* update the source of truth translation files

## Other code changes

* Handle more than one expectation extensions in CapabilityStatement
* Fix NPEs in Liquid renderer
***NO_CI***
2024-05-22 05:02:20 +00:00
Grahame Grieve fae2d1336c remove "LOINC 2711-0 Oxygen saturation in Venous blood" from the list in the validator that checks whether an observation is a vital sign 2024-05-21 16:51:45 -05:00
markiantorno 1f6aaa1db3 Updating version to: 6.3.9-SNAPSHOT and incrementing test cases dependency. 2024-05-20 13:16:27 +00:00
markiantorno 5165942802 Release: v6.3.8
## Validator Changes

* Fix bug processing extension with explicit type slicing
* Fix wrong language code from java locale
* Don't accidently hit other terminology servers for code systems handled natively by tx.fhir.org
* Validate Additional Bindings (provisional - usage context is todo)
* Improved system specific checking of value set filters - particularly LOINC and SNOMED CT, and update LOINC validation to the latest understanding of LOINC filters

## WHO I18n Project

* Add importing translations to native resources
* Finish Migrating text phrases to i18n framework
* Fix bugs with loading translations (#1592)

## Security

* Move all network access to go through ManagedWebAccess
* More security documentation

## Other code changes

* Put jurisdiction in npm package.json
* Add testing ontoserver to test suite
* Fix NPE testing Ontoserver
* fix tx tester calling run ok when a filter is applied and tests fail
* Fix name of preferred when rendering AdditionalBindings
* Add AdditionalBinding version conversion in profiles
* Fix SNOWMED spelling
* Fix rendering of multiple imports in value sets
***NO_CI***
2024-05-20 12:30:29 +00:00
Grahame Grieve a86fe5a2d2 FIx up issues with calling translation on the wrong set of properties (#1592) 2024-05-20 04:38:17 -05:00
Grahame Grieve de79e47de6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-19 06:11:17 -05:00
Grahame Grieve f15f9f394e Refactor system specific checking of value set filters 2024-05-18 07:36:30 -05:00
Grahame Grieve 5956da771e fix NPE testing Ontoserver 2024-05-18 03:25:46 -05:00
Grahame Grieve 0645c79eb6 add testing ontoserver to test suite 2024-05-18 03:25:34 -05:00
Grahame Grieve 29442c0b1d fix tx tester calling run ok when a filter is applied and tests fail 2024-05-18 03:25:23 -05:00
Grahame Grieve 6ba9a11c51 Validate Additional Bindings (provisional - usage context is todo) 2024-05-18 03:24:54 -05:00
Grahame Grieve 4911f4fef8 updates for ManagedWebAccess 2024-05-18 14:58:33 +10:00
Grahame Grieve a510a6d1aa introduce ManagedWebAccess 2024-05-16 13:34:50 +10:00
Grahame Grieve 5ae44c23d5 fix up LOINC validation for value set filters 2024-05-12 22:28:15 +10:00
markiantorno 248b8b1ac8 Updating version to: 6.3.8-SNAPSHOT and incrementing test cases dependency. 2024-05-10 05:02:38 +00:00
markiantorno d81fc5d82d Release: v6.3.7
## Validator Changes

* Fix bug where some #refs are not resolved to the root of the resource in FHIRPath slicing evaluation
* Fix bug passing wrong type to tx server when using inferSystem
* Fix bug processing version of CodeSystem.supplements incorrectly
* Don't process wrong parent when processing snapshot of element with profiled type that is not reprofiled
* Fix typo in OID message
* Fix handling value set exclude filters
* Allow code system declared properties to be self-referential

## I18n changes

* More comprehensive internationalization phrase coverage reporting on project page
* Move many rendering phrases into i18n framework

## Rendering Changes

* Fix issue with unknown element rendering fixed value for Attachment
* Fix bug calculating value set expansion size for multiple imports
* Fix bug using wrong message for value sets that are too costly to expand
* Fix extension urls not being linked in tree view
* rendering improvements and remove static use of describeSystem
* Fix NPE rendering profile comparisons
* Fix bug where slicing and grouping gets mixed up rendering profile tree

## Other code changes

* Wrap general exception for IWorkerContext (Catch missed exception from HAPI)
* Shim interfaces and classes to support clinical reasoning project updates.
* Fix duplicate txServer getters and setters
* Use extension class on Exception to force try-catch blocks on checkCodeOnServer calls (#1609)
* rework OID handling for better consistency
* handle time outs doing vsac import (starlink obstructions)
***NO_CI***
2024-05-10 04:18:38 +00:00
Grahame Grieve bf842f0181 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-10 09:50:21 +10:00
Grahame Grieve ffec50c71b
Merge pull request #1617 from hapifhir/2024-05-gg-misc2
2024 05 gg misc2
2024-05-09 23:06:24 +00:00
Grahame Grieve ee5987a301
Merge pull request #1618 from hapifhir/do-20240509-fix-clicontext-fields
Fix duplicate txServer getters and setters
2024-05-09 22:59:31 +00:00
Grahame Grieve 5a9ef0b57c move supplement version test cases to normal test cases 2024-05-10 08:58:20 +10:00
Grahame Grieve 5259bf9847 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-10 08:49:11 +10:00
Grahame Grieve 4b32505953
Merge pull request #1614 from Boereck/fix/canonical_split_base_validator
Fix/canonical split base validator
2024-05-09 22:48:30 +00:00
dotasek.dev 2c2e935f0a Fix duplicate txServer getters and setters 2024-05-09 15:26:20 -04:00
Grahame Grieve ba3dc45863 Fix bug where some #refs are not resolved to the root of the resource in FHIRPath slicing evaluation 2024-05-09 19:16:33 +10:00
dotasek 178f7b0fa1
Use extension class on Exception to force try-catch blocks on checkCodeOnServer calls (#1609)
* Catch missed exception from HAPI

* Wrap general exception for IWorkerContext
2024-05-08 10:18:01 -04:00
Max Bureck be0d718ac7 Changed use of message ID string in test to use constant instead 2024-05-08 14:52:11 +02:00
Max Bureck 962aee14a3 Added test case for CodeSystem.supplements with versioned canonical 2024-05-08 11:45:56 +02:00
Max Bureck 81f02da5c2 Fix split logic of canonical into url and version in several places
Removed
- org.hl7.fhir.r4b.renderers.DataRenderer#versionFromCanonical
- org.hl7.fhir.r4b.renderers.DataRenderer#systemFromCanonical
- org.hl7.fhir.r5.renderers.DataRenderer#versionFromCanonical
- org.hl7.fhir.r5.renderers.DataRenderer#systemFromCanonical
- org.hl7.fhir.validation.BaseValidator#versionFromCanonical
- org.hl7.fhir.validation.BaseValidator#systemFromCanonical

Replaced all usages of aforementioned methods by the use of
org.hl7.fhir.utilities.CanonicalPair.

Improved CanonicalPair to avoid multiple lookup of the | character. And
added a few convenience methods to the class.

This fixes the issues of #1611 (not replacing all canonical splits in
other places of the code).
2024-05-07 16:46:14 +02:00
Grahame Grieve c24fde0bb6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-05 18:17:33 +10:00
Grahame Grieve f79fdb44ec rendering improvements and remove static use of describeSystem 2024-05-05 18:12:57 +10:00
Grahame Grieve a28ba7ee2e allow code system declared proporties to be self-referential 2024-04-25 22:00:08 +10:00
markiantorno 9ce2c57b8b Updating version to: 6.3.7-SNAPSHOT and incrementing test cases dependency. 2024-04-23 08:51:21 +00:00
markiantorno 46bdec9054 Release: v6.3.6
## Validator Changes

* fix NPE loading resources
* Don't enforce ids on elements when processing CDA
* Send supplements to tx server
* fix bug processing code bindings when value sets are complex (multiple filters)
* fix spelling of heirarchy
* Look up CodeSystem from terminology server
* Don't use tx-registry when manual terminology server is set

## Other code changes

* More work on WHO language support ($1592)
* allow validation message to have count
* render versions in profile links when necessary
* rework OID handling for better OID -> CodeSystem resolution
* fix up vsac importer for changes to client
* don't send xhtml for tx operations
* FHIRPath: Backport the defineVariable code to the R4 and R4B fhirpath implementations
* FHIRPath: Remove the alias/aliasAs custom functions (use standard defineVariable now)
* Bump lombok (#1603)
***NO_CI***
2024-04-23 08:03:57 +00:00
Grahame Grieve 60bf358bfa Look up CodeSystem from terminology server + don't use tx-registry when manual terminology server is set 2024-04-23 08:34:25 +10:00
Grahame Grieve 46500069a4 Don't run $lookup and $translate tests on internal terminology server 2024-04-22 17:11:30 +10:00
Grahame Grieve 84d0b13b2f re-Add support for $lookup and $translate in tx tests 2024-04-20 23:37:29 +10:00
Grahame Grieve 74e5f1d493 Don't enforce ids on elements when processing CDA 2024-04-20 23:37:07 +10:00
Grahame Grieve 3fb9bc20f4 fix spelling of heirarchy 2024-04-20 23:32:52 +10:00
markiantorno ed18ec2cc6 Updating version to: 6.3.6-SNAPSHOT and incrementing test cases dependency. 2024-04-16 22:47:50 +00:00
markiantorno ccf66ece0b Release: v6.3.5
## Validator Changes

* Fix up path management in the validator for resolving references in Bundles
* Add support for defineVariable in FHIRPath
* Fix problem with CDA element having multiple types
* Fix problem with 'is' not working in FHIRPath for CDA types
* Fix issue processing CDA generic type names
* Fix for NPE processing tx server response
* Add support for code system supplements when communicating with tx server

## Other code changes

* OSGI: make sure JUnit 4 and 5 dependencies are optional (#1596) (Also removed duplicate managed versions of JUnit 4.13.2 and mockwebserver 4.11.0)
* Render CapabilityStatement.imports (and instantiates)
* Terminology Service Tests - minor improvements for running in HAPI, add $lookup & $translate support, create R4 clone
* Add support for $translate to terminology client
* More i18n work in rendering context (WHO project)
* Add isServerSide for seeing if code systems are only supported on the server
* Fix R4B loading issue that lead to wrong web paths for R4B resources
* Fix problems rendering Binary files in IGs
* Add support for rendering logical URIs
* Remove path.toFile()

## Security

* Finish moving all local file access to go through ManagedFileAccess

## WHO Internationalization work

* More work on date rendering
***NO_CI***
2024-04-16 22:01:50 +00:00
Grahame Grieve 1268145ef7 compile fix 2024-04-16 20:30:31 +10:00