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1825 Commits

Author SHA1 Message Date
Simon Marco Janic bb767d7f1c [(master)] Added missing import. 2017-11-06 12:59:13 +01:00
Simon Marco Janic 1c1098a2b7 [(master)] Added check for sub-extensions. 2017-11-06 12:32:11 +01:00
Simon Marco Janic b4032f4e8c [(master)] Added support for extensions in Meta resource 2017-11-06 12:32:07 +01:00
Simon Marco Janic bdb15f57e0 [(master)] Added check for sub-extensions. 2017-11-06 11:06:42 +01:00
James bde05c8b4d Fix broken DeviceStatus enums 2017-11-05 19:20:49 -05:00
James Agnew 75bfb6af1b Add support for Binary X-Security-Context header in server 2017-11-02 11:38:43 -04:00
James Agnew 256d541dda
Merge pull request #736 from malcolmm83/master 
Fix for Binary.securityContext is not being encoded #734
 2017-11-01 15:37:43 -04:00
Simon Marco Janic 53674db357 [(master)] Added support for extensions in Meta resource 2017-11-01 11:37:51 +01:00
James 0fb74e5d42 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-10-31 20:22:59 -04:00
James Agnew 1d06c9165b Remove more windows line ending dependencies 2017-10-31 17:55:16 -04:00
James 5a5933f232 Remove dependencies on StAX on Android 2017-10-30 16:41:31 -04:00
James Agnew 7c1ab11b02 Clean up places where CORS headers are declared - Related to #718 2017-10-30 16:37:47 -04:00
James Agnew 64e120cef8 Custom structs in progress 2017-10-30 16:19:09 -04:00
James 15ba0dff03 Clean up email subscription type 2017-10-26 06:02:12 -04:00
Clayton Bodendein d0e747d6ec Fixed issue #768 in a different way by wrapping the DataFormatException as an InvalidRequestException so that it still gets sent as a 400 response but now DataFormatException stacktraces can now be conditionally sent based on the ExceptionHandlingInterceptor#setReturnStackTracesForExceptionTypes(Class<?>...) configuration 2017-10-22 22:20:48 -05:00
James Agnew 16e19a9fed Fix #720 - Failure to parse custom type 2017-10-21 13:47:03 -04:00
James Agnew 175f9dfc5a Remove dependency on StAX for XML parsing in DSTU2 Xhtml type 2017-10-16 17:22:50 -04:00
James Agnew 9ca85b4cf3 Re-enable errorprone on standard hapi fhir build. woohoo! 2017-10-15 11:27:30 -04:00
James Agnew 0a2525e1e0 Remove some duplicate classes 2017-10-14 15:42:55 -04:00
James 31fb1236a1 Reuse bundle ID when returning query cache results 2017-10-11 06:05:14 -04:00
James 432c511a30 Add license 2017-10-06 15:41:40 -04:00
James ce720f5601 Add support for Cache-Control header in JPA server and client 2017-10-05 13:38:53 -04:00
James Agnew 87383ad802 Version bump to 3.1.0-SNAPSHOT 2017-09-27 21:23:34 -04:00
Malcolm McRoberts 511f4939c8 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 
Changes to encoding for Binary and unit test.
 2017-09-25 00:02:10 -04:00
Malcolm McRoberts a57003808d Added unit test for encoding Binary with securityContext, and fixed encoding in JasonParser 2017-09-24 23:55:27 -04:00
James 49bdaa1a45 Version bump to 3.0.0 2017-09-23 17:31:39 -04:00
James Agnew fc7144ee03 Work on JPA optimization 2017-09-17 20:05:28 -04:00
James Agnew e94d639d29 Refactor websockets to use queuing mechanism 2017-09-14 21:29:57 -05:00
James Agnew 836d4d051b Work on IG Pack uploading 2017-09-07 20:33:19 -07:00
James Agnew 2aa538bd56 Add ability for system to track unique constraints 2017-09-05 17:33:19 -07:00
James Agnew cae21f4898 Update syntax highlighter to not use tables 2017-08-28 10:26:07 -04:00
Eugene Lubarsky 5d3a985ae1 ResponseHighlighter - added performance logging to the browser console 2017-08-17 12:55:18 +10:00
James f04b080d50 Honour headers in rest hook subscribers 2017-08-15 07:42:18 -04:00
James 94953e8a5c Merge in latest work on subscriptions and GraphQL 2017-08-14 22:00:59 -04:00
James b9494c179a Squashed commit of the following: 
commit fa508e27b2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:38:12 2017 -0400

    Fix android tests

commit dea567e960
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:25:28 2017 -0400

    Still trying to get tests passing

commit 6bbfec381f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:00:59 2017 -0400

    Work on getting tests passing

commit 5e0a7672b7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 18:12:58 2017 -0400

    Work on GraphQL integration

commit 1c88fd154d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 15:19:41 2017 -0400

    Upgrade subscriptions to use interceptors across the board

commit de5c01c00d
Author: James <jamesagnew@gmail.com>
Date:   Mon Aug 14 09:09:32 2017 -0400

    Work on subscription

commit 387d504098
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 06:19:25 2017 -0400

    Work on subscriptions

commit 95a607d155
Merge: d851de7ffd b9dbd64101
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:42:22 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit d851de7ffd
Merge: 5413b276af 209752cd63
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:42:00 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit b9dbd64101
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:40:35 2017 -0400

    Work on subscriptions

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 5413b276af
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:36:25 2017 -0400

    Work on graph QL support

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
 2017-08-14 21:35:56 -04:00
James be5c5ebecd Merge in HAPI 3.0.0 working branch! 
Squashed commit of the following:

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
 2017-08-13 14:39:47 -04:00
James 356d9acaf7 Revert one change from #706 2017-08-13 11:04:24 -04:00
James Agnew 72be7ab795 Merge pull request #706 from InfiniteLoop90/master 
Fixes #705 - Client correctly validates the server's conformance statement FHIR version
 2017-08-13 11:03:52 -04:00
James Agnew dedd3d635b Merge pull request #695 from SRiviere/#622 
#622 Extension lost on ID datatype or extension of type primiti…
 2017-08-13 10:03:58 -04:00
James Agnew 6efafe62f1 Merge pull request #688 from CarthageKing/bugfix-issue659 
Correctly serialize baseurl/FooResource references
 2017-08-12 14:51:46 -04:00
Clayton Bodendein 9a32202d03 Also related to issue #705, added an explicit check for DSTU2.1 as well when the client checks the server's conformance statement FHIR version 2017-08-06 21:27:05 -05:00
Clayton Bodendein 1743d108b6 Fixed #705 by making RestfulClientFactory check for the correct FHIR version strings when the client code tries to validate the server's conformance statement. Also fixed the corresponding unit tests. 2017-08-06 14:03:15 -05:00
James Agnew 274e218494 Fix #696: Corresctly handle negative numbers 2017-07-26 16:59:35 -04:00
Sebastien Riviere 0fd5a44b5e Fixed #622 Extension lost on ID datatype or extension of type primitive during parsing 2017-07-24 13:43:55 +02:00
James 42a81f4a85 Fix some unit tests 2017-07-24 06:06:27 -04:00
James f7d4296046 Tweak to #683 2017-07-14 06:16:41 -04:00
James Agnew 65cc41e376 Allow patch to proceed with AuthorizationInterceptor 2017-07-12 11:14:14 -04:00
James Agnew 73ddf0e0d9 More enhancements to ResponseHighlighterInterceptor 2017-07-12 10:00:47 -04:00
James Agnew 45b05326c5 Improve display of syntaxt highlighting 2017-07-12 09:47:10 -04:00
James Agnew 38b7212e52 Add line selection and header display to ResponseHighlighterInterceptor 2017-07-12 09:04:05 -04:00
michael.i.calderero 11aa1c5a9e fix for #659 2017-07-10 18:10:31 -05:00
James Agnew f1f72980de Merge pull request #651 from eug48/master 
ResponseHighlighter enhancement proposal - hyperlinks and selections
 2017-07-10 16:03:40 -04:00
James b44bdeec88 Clean up rest hook interceptor a bit 2017-06-30 07:24:33 -04:00
James Agnew 7834bb2625 Do not load results into the database in JPA if there is no paging 
provider
 2017-06-29 22:15:23 -04:00
James Agnew 674424a30b Add tests 2017-06-29 21:34:56 -04:00
James Agnew 10ff2dd16c Add test 2017-06-28 19:54:24 -04:00
James b474a1f2ef Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-16 10:00:27 -04:00
James 507cac3127 Respect prefer header on transaction processing 2017-06-16 09:52:12 -04:00
James Agnew 7588a2ecff Modify patch for #655 so that it fixes #604 without causing us to allow 
invalid values
 2017-06-09 16:30:20 -04:00
christian ohr 872d72629c #604:allow MINUTE precision for datetimes 2017-06-09 15:21:53 -04:00
James Agnew c2e5fa3f18 Fix #667 - When using the AuthorizationInterceptor with the JPA server, when a client is updating a resource from A to B, the user now needs to have write permission for both A and B 2017-06-09 11:48:17 -04:00
James 14edc79ac1 Version bump to 2.6-SNAPSHOT 2017-06-09 07:28:29 -04:00
James 8b5209ff67 Version bump to 2.5 2017-06-08 06:34:44 -04:00
James Agnew c04146a76a Revert "Allow MINUTE precision for datetimes. Closes #604" 2017-06-07 21:42:52 -04:00
James Agnew 1b557b05f0 Merge pull request #655 from ohr/master 
Allow MINUTE precision for datetimes. Closes #604
 2017-06-07 21:30:33 -04:00
James Agnew 7d5fbe7482 Merge pull request #649 from iceoss/rest-client-patch 
Null access fix for BaseClient exception handlers.
 2017-06-07 21:15:22 -04:00
christian ohr aafde2eceb #604:allow MINUTE precision for datetimes 2017-05-26 15:27:58 +02:00
James 6dbcd0fc31 Remove import 2017-05-22 16:20:58 -04:00
James 6764079129 Bugfixes to the testpage overlay 2017-05-22 16:15:51 -04:00
James Agnew 5ef8b70a1f Merge branch 'master' into master 2017-05-20 18:25:02 -04:00
James 78643981f6 Credit and test for #636 2017-05-20 18:12:34 -04:00
James Agnew 77109cb76b Merge pull request #636 from gijsbert802/fix-hex-encoded-xml-entity-parsing 
Fix parsing of hexadecimal encoded entities.
 2017-05-20 18:10:27 -04:00
James Agnew 9ca8a285b9 Merge pull request #633 from gijsbert802/use-charset-from-http-header-2 
Use the charset from the content-type header of the HttpRequest instead of always using the default charset.
 2017-05-20 17:59:03 -04:00
James d550392047 Fix nullpointer exception 2017-05-20 11:44:03 -04:00
James f6ee4db598 Process :missing qualifier on date params 2017-05-19 20:36:06 -04:00
Eugene Lubarsky 3afab596ab ResponseHighlighter enhancements - hyperlinks and dateTime/UUID whole-string selection via some javascript 2017-05-19 19:32:30 +10:00
James Agnew 45041830bc Server now respects the If-Modified-Since header for read operations 2017-05-17 14:57:05 -04:00
James Agnew a92d80d860 Correctly encode extensions on the root of a resource with type 
reference
 2017-05-17 12:40:10 -04:00
maclema 06919f9a20 Update BaseClient.java 
Fix for null access on httpRequest in DataFormatException and IOException handlers.
 2017-05-16 15:15:54 -06:00
James Agnew 4948cdeef5 Fix broken test 2017-05-15 18:22:46 -04:00
James Agnew 7f2faae85e Fix #563: JSON Parser gave a very unhelpful error message (Unknown attribute 'value' found during parse) when a scalar value was found in a spot where an object is expected. This has been corrected to include much more information 2017-05-15 18:06:55 -04:00
James Agnew 48520832ef Doc updates and allow DSTU3 resources in some annotations that 
previously didn't allow it
 2017-05-14 22:03:38 -04:00
James da2d7c3bc3 Clean up testpage overlay 2017-05-14 11:27:52 -04:00
James Agnew 897c65e818 CLI and HttpClient cleanup 2017-05-14 06:39:23 -04:00
Jeff Chung 663125fe94 Resthook subscription implementation, event driven websocket subscription implementation, Tminus subscription support, notification on delete 2017-05-09 15:08:59 -07:00
James Agnew e53d747f2b Get large searches working on Oracle 2017-05-05 15:45:45 +02:00
James Agnew 1af36db7f7 Add unit test only 2017-05-02 09:20:45 -04:00
James Agnew 2a89ff88f7 Merge pull request #630 from Jaypeg85/concurrency_issue 
concurrency_issue
 2017-05-01 15:20:45 -04:00
Gijsbert van den Brink 1fc15905db Fix parsing of hexadecimal encoded entities. 2017-04-28 12:07:00 +02:00
Gijsbert van den Brink 9ffbeb892b Use the charset from the content-type header of the HttpRequest instead of always using the default charset. 2017-04-25 15:33:48 +02:00
James 716fa56b8f Merge branch 'jpa_perf_enhancements' 2017-04-21 06:30:22 -04:00
Jeppe Langhoff Sørensen 6eda689fb1 [(concurrency_issue)] Fixed concurrency issues in BaseRuntimeElementCompositeDefinition 
Removed exceptions used in control flow in ParserState
Test showing further concurrency issues in FhirContext (committed as ignored).
 2017-04-21 09:34:33 +02:00
James cbc652d226 Version bump to 2.5-SNAPSHOT 2017-04-20 16:13:15 -04:00
James Agnew 8887f57577 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-04-20 16:12:02 -04:00
James Agnew bc545f8e3c Issue #590 - Handle paging requests for AuthorizationInterceptor 2017-04-20 16:11:09 -04:00
James 9d3d15ce6f Version bump to 2.4 2017-04-19 21:38:36 -04:00
James cc526f6d99 Upgrade to STU3 2017-04-18 21:58:23 -04:00
James 077676fd03 Bring DSTU3 structs up to FHIR R3 
Squashed commit of the following:

commit 65b70d30c9
Author: James <jamesagnew@gmail.com>
Date:   Tue Apr 18 07:44:08 2017 -0400

    More work on bringing structs up to date

commit 1df2de0667
Author: James <jamesagnew@gmail.com>
Date:   Tue Apr 18 07:12:45 2017 -0400

    Working

commit 9a51323e03
Author: James <jamesagnew@gmail.com>
Date:   Mon Apr 17 22:18:24 2017 -0400

    Updates to STU3

commit 40aebba0a7
Author: James <jamesagnew@gmail.com>
Date:   Mon Apr 17 18:30:26 2017 -0400

    Fix regression caused by #610
 2017-04-18 07:48:38 -04:00
James 6a5d0f95ae Add double-check for #610 2017-04-17 18:10:57 -04:00
James Agnew 9201692c70 Merge pull request #610 from dangerousben/init-race-condition 
Fix FhirContext initialisation race condition.
 2017-04-17 18:02:06 -04:00
James Agnew 282e02801a Merge pull request #624 from CarthageKing/feature-make-bundle-fullurl-override-configurable 
Feature make bundle fullurl override configurable
 2017-04-17 17:46:45 -04:00
James Agnew eea84815c3 Merge pull request #623 from aehrc/feature/legacyContentTypeFHIR140take2 
Accept header and MIME type fixes for DSTU2_1
 2017-04-17 17:44:22 -04:00
James 5adc09ad56 perf enhancements finally working 2017-04-17 16:56:53 -04:00
James 1d9e0dc4cc Merge branch 'jpa_perf_enhancements' of github.com:jamesagnew/hapi-fhir into jpa_perf_enhancements 2017-04-16 15:58:38 -04:00
James cf938752b5 Doc fix 2017-04-16 15:58:27 -04:00
James Agnew 08ec97e78a More work on perf 2017-04-16 15:57:58 -04:00
James Agnew 62ece72e6f More perf work 2017-04-16 12:08:23 -04:00
James Agnew 54055f5bfb Support extensions pointing to references for JPA custom search params 2017-04-14 07:26:49 -04:00
James 1039bbec97 More perf work 2017-04-14 07:25:01 -04:00
michael.i.calderero 7d9883014a add configuration setting to disable overriding of resource ids when the 
Bundle.entry.fullUrl is specified
 2017-04-13 11:32:05 -05:00
James Agnew 23b7de5dd8 More perf work 2017-04-12 18:28:10 -04:00
Michael Lawley 51f8ef7f7f fix FhirVersionEnum order tests wrt equivalent; fix Accept headers 2017-04-12 18:00:18 +10:00
James Agnew cba5aeb47b More perf work 2017-04-10 17:55:50 -04:00
James 90a4e2def2 More work on perf improvements 2017-04-08 19:46:51 -04:00
James Agnew dd84fced5e Merge branch 'master' into jpa_perf_enhancements 2017-04-08 06:54:13 -04:00
James Agnew bf94d78872 Doc updates 2017-04-08 06:53:49 -04:00
James Agnew 660c2bde72 More work on perf 2017-04-06 22:23:20 -04:00
James Agnew 9b1366734a Merge branch 'master' into jpa_perf_enhancements 2017-04-03 15:20:55 -04:00
James Agnew 6ab1cb4c2e Fix compile issues from new version of errorprone 2017-04-03 14:43:59 -04:00
James Agnew efaa7a74cb Work on perf enhancements to JPA 2017-03-30 19:58:32 +08:00
James Agnew ce73e89715 For bit of work on JPA perf enhancements 2017-03-30 06:28:34 +08:00
James Agnew 2c9a6e65e7 Fix #534: Add setting for logical references to DAOConfig 
Merge branch 'master' into issue534
 2017-03-30 03:21:50 +08:00
Ben Spencer 42819dba77 Fix FhirContext initialisation race condition. 2017-03-28 17:24:48 +01:00
James Agnew 93cfb2360c Fix #607 - Testing UI showed an error for transactions on DSTU2 server 2017-03-27 07:50:01 +08:00
James Agnew 69748538d6 Fix a big with the new permissions 2017-03-24 21:10:44 +08:00
James Agnew 44c0075409 AuthorizationInterceptor can now allow make read or write authorization decisions on a resource by instance ID 2017-03-24 21:10:44 +08:00
James 40848b1beb Version bump to 2.4-SNAPSHOT 2017-03-18 12:24:39 -04:00
James 8e800a10b7 Header fixes 2017-03-18 09:38:33 -04:00
James 295e9ec185 Updates for 2.3 2017-03-17 21:49:19 -04:00
James e18ab206d7 Version bump to 2.3 2017-03-17 21:21:59 -04:00
James 8758b6f3da Updating to 1.9.0 structures 
Squashed commit of the following:

commit 81edf46fe02a88851693f958e60855edfe69c04c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Mar 17 21:05:22 2017 -0400

    Work on converter

commit 3342d987008892dd3a75dddd251fe599c31c5a6c
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 08:40:37 2017 -0400

    Site updates

commit 7dcb63904ece1fcb59a09dc268e8382ac0b75535
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 08:36:39 2017 -0400

    STU3 structs working!

commit c5aec809e3f19f3fedf0aaaeab8cdd7924c144a2
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 07:05:54 2017 -0400

    Format test

commit 5033090010e8c93644505bccaa5e41ccbd756485
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 07:03:39 2017 -0400

    Merge tests for STU3

commit de40a516bfa4d2ab7f5e28e2d95815fde68bd10a
Merge: d5a5a60 899ed25
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 06:59:20 2017 -0400

    Merge branch 'master' into dstu3_latest_structs

commit d5a5a601b53d8be6712f0bfe37ba7e6eb4d3ce58
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 14 12:04:37 2017 -0400

    Latest fixes

commit ae46ad53d2075e66e3c58c1e626652b4e144f20c
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 14 06:51:59 2017 -0400

    STU3 structs passing

commit ec3b62d31131d303001f8574c58fb7a8b8194f68
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 22:20:05 2017 -0400

    Fix some tests

commit 933f9b08c32dd8671638f406a0966c5ee07d86a1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 21:18:03 2017 -0400

    Fix test

commit 2a3ad0b422f58cfffea966a7005c6a3d86d189da
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 21:07:33 2017 -0400

    Resolve compile issues in STU3

commit fe04eba312a42c74b10a3971e4d61d58ba003bf9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:51:35 2017 -0400

    FIx compilation error

commit 6c63a558c97cf176105967a84a0b32472c6c0fcb
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:48:13 2017 -0400

    Another STU3 struct fix

commit 6acd25458aad89aaff94768c824d4d1fcdac97ba
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:41:16 2017 -0400

    Work on STU3 structs

commit 90a476dba2665a129572ad5cbbd8dd29afd9d4c8
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:28:32 2017 -0400

    Resolve JDK8 dependencies

commit 783bc1519971e977fe7139aa1d3a2e7f37940a63
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:20:57 2017 -0400

    Fix some tests

commit 60c379175b689495e65278bb6a237af3de379aa8
Author: James <jamesagnew@gmail.com>
Date:   Sun Mar 12 19:56:29 2017 -0400

    Work on STU3 structs

commit e98c2eed6601f7009e199aca3b82399a3377077c
Author: James <jamesagnew@gmail.com>
Date:   Sun Mar 12 19:41:48 2017 -0400

    Work on DSTU3 structures

commit 3ce909212bf0f11561b8342d406cffcf957afeb3
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 7 21:03:14 2017 -0500

    Work up upgrading structs
 2017-03-17 21:06:12 -04:00
Diederik Muylwyk 436e898819 Added a hook for post-processing request details and validation results on failure. 2017-03-17 17:02:05 -04:00
James Agnew 64be79e295 Merge pull request #571 from jodue/master 
Pull request for issue #551 to fix parsing of input fields > 512kb with JBoss
 2017-03-17 06:46:25 -04:00
James Agnew 45e4bd92ee Merge branch 'master' into jaxrs-sever-evolution 2017-03-16 22:04:55 -04:00
James fc7ac7ab00 Credit for #542 2017-03-16 21:57:55 -04:00
James 8a32e4bae5 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-03-16 21:36:14 -04:00
James 2f367a1a4e Get process message working 2017-03-16 21:32:59 -04:00
James 9501ea0961 Merge branch 'master' of https://github.com/hugosoares/hapi-fhir into hugosoares-master 2017-03-16 21:32:51 -04:00
James Agnew 0be818c31c Add validation results to oo (#595) 
* Add interceptor

* Add changelog entry

* Update changes.xml

Corrected reference to issue 586 (was 585). Corrected order of actions for issues 586 and 595 (was reversed).

* Update changes.xml

Should have been 585 after all. Whoops!

* Update changes.xml

Adding an item for pull request 565 that was previously approved and merged.

* Fixed test with English String in assertion.
 2017-03-16 13:31:25 -04:00
James Agnew a867890554 585 authorizationinterceptor wildcards (#586) 
* Add wildcards for authorizationinterceptor

* Add changelog
 2017-03-14 22:26:45 -04:00
James 120227da2f License headers 2017-03-11 14:57:43 -05:00
James Agnew 01d102accc Correct handling of contained resources in a response for annotation 
client
 2017-03-01 17:23:31 -05:00
Diederik Muylwyk 3def6f508a New hooks for request validating (#565) 
* Initial work on hooks for tags.

* Added a post-processing hook for subclasses of BaseValidatingInterceptor.

* Added more performant conversion from Enum ordinal to Enum type to ResultSeverityEnum.
 2017-03-01 08:53:16 -05:00
johannes.duenser 0af1041bee Catch Exception on check for Woodstox version property to be on the safe side 2017-02-27 16:04:38 +01:00
johannes.duenser 194074e0cc merged with upstream branch. 
Merge remote-tracking branch 'upstream/master'
 2017-02-27 14:21:24 +01:00
johannes.duenser 837264ea48 Check if Woodstox is used not only by class instance but also by property to fix max-element-size issue for JBoss 2017-02-27 14:14:25 +01:00
James Agnew 0d066275a3 Add base to search param 2017-02-18 16:41:36 -05:00
James Agnew 5811702a92 Merge branch 'master' into master 2017-02-17 17:39:55 -05:00
James Agnew 82ac69d86c Throw correct HTTP status when validation fails because of missing ID 2017-02-11 19:22:25 -05:00
Hugo Soares da9daf86c0 Merge remote-tracking branch 'refs/remotes/jamesagnew/master' 
# Conflicts:

#	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/client/GenericClient.java
 2017-02-09 15:19:08 +00:00
hugosoares 09f44ebc2d Merge branch 'master' into master 2017-02-09 14:23:33 +00:00
Hugo Soares 6eee5e696e Changes requested by james 
https://github.com/jamesagnew/hapi-fhir/pull/542
 2017-02-09 13:59:00 +00:00
James 12e047b931 Fix a couple of compile issues 2017-02-09 06:53:22 -05:00
James Agnew 0dd6364fe5 Improve paging in JPA server for _history operation 2017-02-08 21:42:17 -05:00
sekaijin 7adb35d003 resolve some warnings 
unused
then clause does not complete normally
serial
missing @Override
remove unnecessary cast
 2017-02-08 16:41:03 +01:00
Sebastien Riviere c3447c3b4d Remove substitution string to use relative url, Fix client parser and custom extension. 2017-02-08 11:14:19 +01:00
James b7f165019d Tweak re-indexing 2017-02-07 07:00:51 -05:00
James 116cb1c8f7 Work on repopulating 2017-02-06 21:57:23 -05:00
Sebastien Riviere 3bf6555d61 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir into jaxrs-sever-evolution 2017-02-06 11:34:31 +01:00
James d4dda1dace headers 2017-02-04 18:21:09 -05:00
James 7149d2e053 Merge branch 'custom_jpa_search_params' 2017-02-04 16:34:05 -05:00
James Agnew 3f8a8cd8aa Merge pull request #548 from sekaijin/cleanup 
Cleanup
 2017-02-04 16:02:50 -05:00
James Agnew c85c2269a1 Work on custom params 2017-02-04 14:41:11 -05:00
James 97ff79d730 Work on custom params 2017-02-02 20:37:58 -05:00
James Agnew 3191c907a3 Work on JPA 2017-02-02 06:23:28 -05:00
James b4a362b8ee Work in progress 2017-02-01 05:55:35 -05:00
James Agnew ea1ebb245e Merge pull request #547 from daliboz/master 
Fix #546 CapturingInterceptor will now buffer response
 2017-01-31 07:20:01 -05:00
James 11f1f4f6ee Deprecate getAllPopulatedChildElementsOfType 2017-01-31 06:53:04 -05:00
James ce80007f8d Bump spring version and refactor examples 2017-01-29 22:55:22 -05:00
James Agnew 788792e004 Merge pull request #538 from CarthageKing/feature-parameterutil-fix 
Ensure ParameterUtil.splitParameterString correctly parses consecutive unescaped delimiter
 2017-01-29 17:53:39 -05:00
James Agnew 0223b5341c Merge pull request #489 from jkiddo/master 
Added new independant overlay build for example usage and lenient handling
 2017-01-29 17:50:20 -05:00
James b66aa9761e Allow parsing of RSQuot 2017-01-29 15:49:10 -05:00
sekaijin a150a96089 dependencies convergence 
correct dependencies convergence
correct version use ${project.version}
 2017-01-29 19:22:28 +01:00
sekaijin 23784c1619 remove .settings .project .classpath file of eclipse 2017-01-28 17:13:47 +01:00
Jenni Syed c1e6f82385 Fix #546 CapturingInterceptor will now buffer response if the entity is not repeatable. 2017-01-27 17:45:53 -06:00
Sebastien Riviere dabb3ea2c5 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir into jaxrs-sever-evolution 
# Conflicts:
#	hapi-fhir-structures-dstu3/src/test/java/ca/uhn/fhir/parser/JsonParserDstu3Test.java
 2017-01-27 10:16:43 +01:00
James 12598b4e3b Correctly handle declared extensions with multiple possible types 
Squashed commit of the following:

commit d6ea0552b7
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 09:04:58 2017 -0500

    FIx test

commit e5876f7d86
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 08:35:38 2017 -0500

    Work on extensison

commit 7e573c2299
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 07:27:25 2017 -0500

    Work on extensions

commit 234b4a0c1c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jan 26 06:25:47 2017 -0500

    More work on these extensison

commit 2eb780a690
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Jan 25 22:35:57 2017 -0500

    Work on multitype extensions
 2017-01-26 11:07:52 -05:00
James 8e444fab93 Javadocs 2017-01-25 05:56:22 -05:00
James 8e0a904997 Add adapter for IServerOperationInterceptor 2017-01-24 13:34:30 -05:00
James Agnew 344e324929 Fix #544 
Squashed commit of the following:

commit 1ab9b58e9f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Tue Jan 24 10:46:56 2017 -0500

    Changes working now

commit 5c752cdace
Author: James <jamesagnew@gmail.com>
Date:   Tue Jan 24 08:43:04 2017 -0500

    Get JPA working with new uuid: logic

commit 127b76884a
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jan 23 21:11:18 2017 -0500

    Fix test

commit 599bbe236c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jan 23 18:42:46 2017 -0500

    Work on #544
 2017-01-24 10:47:24 -05:00
James 3ff29370e6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-01-21 18:03:58 -05:00
James d616d20511 Send correct status code from ResponseHighliterInterceptor 2017-01-21 18:03:41 -05:00
Sebastien Riviere cac44c736c Add the possibility to use the serverBaseUrl to generate the url of extension, if %BASE_SERVER_URL% is found 2017-01-19 14:54:17 +01:00
hugosoares c9e11f64aa Merge branch 'master' into master 2017-01-19 09:03:43 +00:00
Hugo Soares 59d29c45b3 Feature Request: Add client support for $process-message special operation #407 
Changed client to send messages to a processing server:
Object response = client
.operation()
.onServer()
.processMessage()
.setResponseUrlParam("http://myserver/fhir")
.setMessageBundle(msgBundle)
.execute();
 2017-01-18 19:33:56 +00:00
michael.i.calderero b59c24ab7c return 404 instead of 400 when the FHIR resource/endpoint is not 
recognized/not supported
 2017-01-17 20:37:43 -06:00
James Agnew 22f796fa7c Allow history operation at type level with authorizationinterceptor 2017-01-16 18:41:39 -06:00
James Agnew 322051a383 Fix failing tests 2017-01-14 07:55:42 -06:00
James Agnew dbc6abc658 Fix #504 - Error if custom type has illegal extensions 2017-01-13 21:46:16 -06:00
James Agnew fa1ad5ba85 Fix #519 - Issues with JPA capabilitystatement related to the _id param 2017-01-13 21:19:19 -06:00
michael.i.calderero a6a1416888 Place empty values when splitting a parameter with a certain char and 
here are at least two unescaped and consecutive variants of the given
char in the string.

This ensures that for example a QuantityParam with a param value of
"5.5||mg" the "mg" will not be treated as the 'system' but be treated
correctly as the 'unit' of the parameter object.
 2017-01-12 14:21:30 -06:00
James 3b41d85952 Server interceptor methods were being called twice unnecessarily by the JPA server, and the DaoConfig interceptor registration framework was not actually useful. Thanks to GitHub user @mattiuusitalo for reporting! Fixes #532 2017-01-11 20:57:39 -05:00
James Agnew c7767937fc License version bumps 2017-01-09 17:48:42 -05:00
James e05b0e5d8a Add test for localizer and add some docs 2016-12-30 08:53:42 -05:00
James Agnew 118c2c4238 Dependency changes 2016-12-25 12:49:07 -05:00
James b448e13edd Version bump to 2.3 2016-12-20 19:01:31 -05:00
James 0ec61533a8 Publish 2.2 2016-12-20 19:00:37 -05:00
James Agnew 750d6d4655 Switch public server to use CapabilityStatement for metadata return type 2016-12-20 15:35:54 -05:00
James 964919d880 Improve parsing 2016-12-19 14:03:11 -05:00
James 7838d511d0 Fix typo in IHttpResponse 2016-12-19 11:29:05 -05:00
James Agnew 4eb2e017f8 Fix #528 - Allow reads by compartment in authorizationinterceptor 2016-12-13 18:30:47 -05:00
James ab17ee68a3 Revert IFhirVersion method signature changes for #520 2016-12-11 18:55:59 -05:00
James e678908087 Licenses 2016-12-11 18:04:59 -05:00
James 9cb014724b Add validator for DSTU2.1 2016-12-11 17:39:05 -05:00
James 901a85880c Update STU3 definitions and being in STU2.1 defs too 2016-12-10 19:51:25 -05:00
James b0d656e5d9 Refactor fix for #520 a bit so that version in DSTU3 is always pulled 
from the model
 2016-12-10 14:40:27 -05:00
James Agnew 47ea6c3426 Merge pull request #520 from aehrc/feature/legacyContentTypeFHIR140 
Ensure that older DSTU3 versions use the legacy mime types
 2016-12-10 14:18:15 -05:00
James ee63bbea74 Fix #516 - Handle STU3 invalid enum values with an appropriate exception 2016-12-10 14:14:22 -05:00
jamesagnew 1fba4ff265 Test refactor 2016-12-10 08:47:28 -05:00
James Agnew 0def3d5a72 Merge pull request #525 from aehrc/feature/parser_exception_handling 
#516 Report invalid values for enums through parser error handler
 2016-12-10 07:39:36 -05:00
James 5149e581db Fix #521 - Wrong or missing ID body in update should be an error 2016-12-08 08:31:52 -05:00
Michael Lawley a9a3507544 #516 Report invalid values for enums through parser error handler 2016-12-06 10:32:23 +10:00
James fd26f074e5 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-12-04 21:09:48 -05:00
James ccfe74ba38 Add license headers 2016-12-04 21:09:28 -05:00
Michael Lawley 8846477b7b Ensure that older DSTU3 versions (ie Baltimore / May2016 / 1.4.0) use the legacy mime types 2016-11-30 12:03:02 +10:00
James Agnew fc55c2cae8 Merge pull request #518 from aehrc/master 
#517 Add fallback for for pre-CapabilityStatement STU3 client
 2016-11-25 18:00:36 -05:00
James Agnew 81773de261 Fix #276 - Prevent contained resources being encoded as duplicates 2016-11-25 17:18:57 -05:00
Michael Lawley fcf8894d11 silly missing bracket 2016-11-25 13:14:48 +10:00
Michael Lawley f6ae22c59c #517 Add fallback for for pre-CapabilityStatement STU3 client 2016-11-25 12:05:59 +10:00
jamesagnew 69871bb8c2 Improve testing on CorsInterceptor 2016-11-24 19:25:37 -05:00
James Agnew 888f42a032 Introduce new CORS interceptor and switch examples to use it 2016-11-21 18:30:51 +01:00
James Agnew 03935be97f Work on common FluentPath interface 2016-11-21 15:52:17 +01:00
James Agnew 5846ce4518 Make the parser configurable so that when parsing an invalid empty value (e.g. {"status":""} parser will either throw a meaningful exception or log a warning depending on the configured error handler. 2016-11-21 14:48:44 +01:00
James Agnew bf35f7e4b2 Fix #495 - Auto-detect DSTU3 mode when those resources are on classpath 2016-11-21 13:44:54 +01:00
Jens Kristian Villadsen f710094c93 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 2016-11-15 13:42:07 +01:00
Jens Kristian Villadsen 6aba4610e6 Added initial lenient handling 2016-11-15 13:41:13 +01:00
James Agnew 72a62817aa Improve detection for #477 2016-11-15 05:54:56 -05:00
James Agnew 4252415e9c Fix #477 - Gracefully handle unexpected elements starting with _ 2016-11-15 05:44:45 -05:00
James 8676489792 Don't incorrectly block transactions 2016-11-11 23:52:16 -05:00
James 2d7592f7a8 Version bump to 2.2-SNAPSHOT 2016-11-11 22:39:45 -05:00
James 047ca6a308 license header 2016-11-11 20:17:06 -05:00
James 2dd26b6367 Version bump to 2.1 2016-11-11 15:16:53 -05:00
James Agnew a03805a6d4 Clean up patch client 2016-11-11 15:08:16 -05:00
James Agnew 846aecfe89 Merging #470 2016-11-11 10:45:53 -05:00
James Agnew 01afc49863 Documentation 2016-11-11 10:43:03 -05:00
James a5d5d3e031 Bump FHR version 2016-11-06 17:34:13 -05:00
James af8ae69ee4 AuthorizationInterceptor enhancements 2016-11-04 07:43:22 -04:00
James f838b80373 Work on authorization interceptor 2016-11-04 06:53:26 -04:00
James 6cb502266c More cleanup for auth interceptor 2016-11-03 08:27:14 -04:00
James 8c53ad24f7 Clean up authorization interceptor tests 2016-11-03 08:10:54 -04:00
James 3a5a771de7 Fix #484 - Correctly parse resources containing an empty div tag as the narrative 2016-11-03 07:51:11 -04:00
James e7e0bf8d54 Fix regression in AutohrizationInterceptor 2016-10-26 21:55:08 -04:00
James Agnew f5bec16cb4 Fix tests for #472 2016-10-26 14:10:43 -04:00
James Agnew a67171e231 Fix #472 - Wrong header being returned (Content-Location instead of 
Location) on STU3 server
 2016-10-26 12:12:19 -04:00
James 2a7fa4d8a5 Make authorizationinterceptor stricter 2016-10-22 18:00:55 -04:00
James Agnew 173d40496d Merge pull request #455 from hnnesv/dstu1-atom-entry-author 
DSTU1: Add entry author to encoded xml bundle
 2016-10-20 11:28:59 -04:00
Bill Denton 913fd32c2b Support JSON-like resource structures (#469) 
* rebuild on 2.1 code and add more test coverage

* additional test coverage
 2016-10-19 10:40:38 -04:00
James Agnew 3d686e9383 Fix #464 - Pretty print by default in ResponseHighlighterInterceptor 2016-10-18 14:58:28 -04:00
James Agnew f80bf98dcd Fix #327 - Correctly serialize JSON extension with a reference to a 
contained resource
 2016-10-14 16:36:29 -04:00
James Agnew e56c75e80c Switch Android library to use OkHttp by default 2016-10-14 16:15:27 -04:00
James Agnew deae820ebe Fix up comnpile issue 2016-10-12 15:29:40 -04:00
James Agnew f47597d2ec Rename client param method 2016-10-12 14:51:47 -04:00
James Agnew 8c455d41b6 Rename method from #451 2016-10-12 14:47:51 -04:00
James 09af42200c License headers 2016-10-11 05:30:22 -04:00
James Agnew b37a1edaae Fix offset error when returning multiple pages in JPA search 2016-10-07 17:42:02 -04:00
James Agnew 0093403860 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-07 11:31:12 -04:00
James Agnew 2c4139dc82 Allow fluent client to handle return types other than Parameters when 
invoking operations
 2016-10-07 11:29:53 -04:00
James Agnew 11d3ae9447 Fix #411 - Searching by POST with urlencoded parameters doesn't work if 
interceptors are accessing the parameters and there is are also
parameters on the URL
 2016-10-06 13:23:32 -04:00
James Agnew f5eda76388 Use new STU3 mimetypes by default 2016-10-06 12:17:59 -04:00
James a4975887b8 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-06 06:28:06 -04:00
James 2a5c26b08b Dependency bump 2016-10-05 05:17:07 -04:00
James Agnew 61d6f1ba8d Second attempt to fix #459 2016-10-04 17:55:28 -04:00
James Agnew 012090b719 Fix #459 - Race condition in unit tests 2016-10-04 17:15:51 -04:00
James Agnew 1fd881d8f8 Return an error if a parameter is called with a chain even though it 
doesn't support chaining
 2016-10-04 17:02:13 -04:00
James Agnew 26cd316343 Fix #414: Parser should not choke with a NullPointerException if it 
encounters an extension without a URL
 2016-09-30 17:35:29 -04:00
James Agnew ff4755fbf3 Fix #441: Correctly handle search with chains across a field with choice 
type
 2016-09-30 14:03:20 -04:00
James Agnew eba136d706 Correctly handle custom types in programatic access to JPA 2016-09-27 14:22:48 -04:00
hnnesv 92e6b6d884
DSTU1 Atom: Add entry author to encoded xml bundle 2016-09-23 13:06:21 +02:00
James Agnew 3d73aad275 Fix unit tests 2016-09-21 16:58:57 -04:00
James Agnew ae97165a0a Add interceptor method on server which will be called after all other 
processing
 2016-09-18 16:08:16 -04:00
James Agnew 40286f49c2 Merge branch 'patch' of github.com:jamesagnew/hapi-fhir into patch 2016-09-17 23:40:54 -04:00
James Agnew 6e97936eca More work on patch 2016-09-17 16:55:21 -04:00
qagwaai 58185d199b Updated GenericClient to call MethodUtil updated signature 2016-09-17 14:24:18 -04:00
James Agnew ad447126f2 Merge in patch changes 2016-09-17 13:55:12 -04:00
James Agnew e50a34b540 Merge branch 'patch' of github.com:jamesagnew/hapi-fhir into patch 2016-09-17 13:41:17 -04:00
James Agnew 1343badba4 Working on patch 2016-09-17 13:40:03 -04:00
qagwaai 5ebc3ef513 initial patch scaffolding 2016-09-17 13:36:56 -04:00
James Agnew 364c18e06e Use more compatible Accept header in STU3 client. Also fixes missing 
Woodstox library in android builds per #450)
 2016-09-16 23:46:06 -04:00
FilipDomazet e2f03a9a26 Fixed issue with adding profile information to an unmodifiable list (#448) 2016-09-16 15:02:22 -04:00
James Agnew f92c5a7232 Fix #446 - Don't give child resources the ID of the parent 2016-09-16 15:01:14 -04:00
James 1db9f726f9 Localizer update 2016-09-15 09:05:49 -04:00
James Agnew a2ffc6af05 Fix #444 - Correct handling of parsing milliseconds in dates before 1970 2016-09-09 18:18:28 -04:00
James ed7e6929a7 Add gitignore 2016-09-09 08:32:45 -04:00
James Agnew 6357c38180 Support _has param in conditional URLs in JPA 2016-09-08 13:14:15 -04:00
James Agnew 202a1ea885 Fix web testing UI regression 2016-09-06 17:59:04 -04:00
James Agnew 6b9f8ec487 Fix unit tests 2016-08-30 18:27:57 -04:00
James Agnew 98e0753b93 Properly add include resources 2016-08-30 16:38:09 -04:00
James Agnew 906bcfb803 Version bump to 2.1 2016-08-30 10:55:55 -04:00
James Agnew d27aad487e Bump to 2.0 release 2016-08-30 10:50:04 -04:00
James d36e0013c0 Add version constant for dstu2.1 2016-08-29 07:33:29 -04:00
James 333aa0afde Correctly update versions on transactipn update 2016-08-28 22:56:59 -04:00
James Agnew a1105fac1e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-08-25 18:27:32 -04:00
James Agnew 17940b8a24 Improve performance when parsing contained resources 2016-08-25 17:41:33 -04:00
James 3c65b64ed7 Fix changelog typos 2016-08-25 08:16:27 -04:00
James acdbdc0be7 Fix #426 - Extension with datatype of ID failed to parse 2016-08-25 07:32:37 -04:00
James Agnew 9d3bd1ada4 Don't add an empty narrative if no template exists 2016-08-24 13:06:08 -04:00
James 9f5d672133 Improve error handling in narrative generator 2016-08-24 06:09:55 -04:00
James Agnew c4d302df8d Upgrade to Thymeleaf 3 2016-08-23 19:11:49 -04:00
James 1ca39a9e71 Fix tests 2016-08-23 07:49:18 -04:00
James aa16a46b74 Fix #428 - Fix NPE when encoding extension 2016-08-23 07:23:07 -04:00
James 0e7405cef2 Better error message when localizer can't find key 2016-08-22 21:33:07 -04:00
James Agnew cc6c32f987 Fix tests 2016-08-22 09:43:01 -04:00
James Agnew e07b5299ac Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-08-22 09:19:22 -04:00
James 35a890db34 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-08-22 07:42:02 -04:00
James Agnew 7f15520db8 Don't include Location header in server responses for DSTU3 servers 2016-08-21 11:39:44 -07:00
James Agnew 379abb8e47 Don't strip urn: prefixes from references when encoding 2016-08-16 11:23:07 -07:00
James Agnew eee168ced6 Add support for conditional operations to AuthorizationInterceptor 2016-08-15 13:35:50 -04:00
James b0d19c3a65 Fix #423 - Encode custom types with custom type fields correctly 2016-08-14 13:05:16 -04:00
James Agnew 8354f4b565 Use correct accept header 2016-08-05 18:39:44 -04:00
James Agnew 74950a4efc Fix regression when parsing contained resources 2016-08-05 18:01:44 -04:00
James Agnew 4ff25b093f Add license headers 2016-08-05 15:50:53 -04:00
jamesagnew 545b359697 Fix #406 - Allow arbitrary authentication realm 2016-08-01 21:36:50 -04:00
James Agnew dd8b1cd979 Use corrrect types from client 2016-07-27 18:15:09 -04:00
jamesagnew 41b58108f2 Bump version dependencies and return 200 for conditional delete with no matches 2016-07-25 08:46:02 -04:00
jamesagnew fd4979f56a Fix compile issues 2016-07-24 11:11:27 -04:00
jamesagnew 294e467811 Fix #409 - Tag#setCode did not work 2016-07-24 09:28:22 -04:00
jamesagnew 7dbd5a21ca Fix tests 2016-07-24 09:20:54 -04:00
jamesagnew a9b29d5088 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-23 18:51:08 -04:00
jamesagnew 350e82b6cf Fix #403 - Allow references to keep versions when encoding 2016-07-23 18:48:00 -04:00
James Agnew 748c13d0dc Remove bad dependency 2016-07-22 18:33:16 -04:00
James Agnew 7bea8431f7 Add interceptor for rejecting TRACE and other invalid verbs 2016-07-19 19:16:09 -04:00
James Agnew 94128e2e6d Fix tests 2016-07-18 13:50:08 -04:00
jamesagnew 5073692eda Always include SUBSETTED tag when _elements is used on server 2016-07-18 07:05:11 -04:00
jamesagnew 196c11bfa2 Use new style mimetypes but keep supportuing the old ones as well 2016-07-17 18:35:06 -04:00
jamesagnew ef1c81e241 Fix #150 - Don't encode null fluent client values 2016-07-14 07:18:48 -04:00
James Agnew f6601cc347 Add example for terminology uiploading 2016-07-13 09:40:50 -04:00
jamesagnew fa37afb61f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-12 21:44:52 -04:00
jamesagnew ed941a116b Update to use GSON 2016-07-12 21:44:40 -04:00
James Agnew c3e9f618eb Version bump to 2.0-SNAPSHOT 2016-07-12 11:12:07 -04:00
jamesagnew 8156abf803 More prep for 1.6 2016-07-06 08:19:27 -04:00
jamesagnew acaf2135c5 Finalize 1.6 release 2016-07-06 07:29:20 -04:00
James Agnew a8585c881d Fix #396 - Make tests timezone independent 2016-07-04 13:48:05 -04:00
jamesagnew a3af502ee2 Add test for #391 2016-07-03 10:23:48 -04:00
jamesagnew 32bdd14639 Work on term service 2016-07-02 17:14:36 -04:00
jamesagnew 4a49e5b7f9 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-01 14:31:25 -04:00
jamesagnew b8f1f39ead Add tests and get :below queries working for built-in code systems 2016-07-01 08:51:47 -04:00
James Agnew 7ef48413c4 Term service enhancements 2016-06-30 17:45:41 -04:00
James Agnew 38d30eef49 Respect order for order=REPLACE_PARENT 2016-06-29 10:26:36 -04:00
jamesagnew 9b6f548970 Work on term service, and allow child classes when serializing 2016-06-29 08:08:42 -04:00
James Agnew b587e3695b Add client integration test 2016-06-27 13:43:12 -04:00
jamesagnew c28a2c40f0 Fix #394 - Don't use a method from Commons-Lang3 3.3 2016-06-27 06:19:22 -04:00
jamesagnew c2dbcc7ff0 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-06-26 23:12:26 -04:00
jamesagnew fae4344c36 Add documentation around security interceptor 2016-06-25 11:27:55 -04:00
jamesagnew 556058a7b7 Tests passing 2016-06-25 10:55:31 -04:00
James Agnew db0a208927 Work on terminology importing 2016-06-24 18:40:44 -04:00
James Agnew b84150ff5e Randomly set locale after each test in order to make sure we aren't 
dependent on a specific environment
 2016-06-21 09:53:24 -04:00
jamesagnew f4c6f09f08 Fix tests 2016-06-20 07:52:44 -04:00
jamesagnew 2e8c20dc83 More work on terminology services, and add support to operations to AuthorizationInterceptor 2016-06-20 07:19:08 -04:00
jamesagnew 36505c60d8 More work on term service importing 2016-06-19 10:35:27 -04:00
jamesagnew a7cbb5c022 More test coverage 2016-06-18 13:32:45 -04:00