jamesagnew
f4c6f09f08
Fix tests
2016-06-20 07:52:44 -04:00
jamesagnew
2e8c20dc83
More work on terminology services, and add support to operations to AuthorizationInterceptor
2016-06-20 07:19:08 -04:00
jamesagnew
36505c60d8
More work on term service importing
2016-06-19 10:35:27 -04:00
jamesagnew
a7cbb5c022
More test coverage
2016-06-18 13:32:45 -04:00
jamesagnew
b3d8d453de
Improve test coverage and clean up UnclassifiedServerFailureException processing
2016-06-18 10:37:43 -04:00
jamesagnew
785ce1deb9
Remove some dead code and improve test coverage
2016-06-17 07:40:17 -04:00
jamesagnew
dcecde5db9
Improve test coverage
2016-06-16 22:52:10 -04:00
jamesagnew
c9f85111ab
Add some tests to GenericClient
2016-06-16 07:42:06 -04:00
James Agnew
1683cf8cef
Switch to jacoco
2016-06-15 17:34:50 -04:00
James Agnew
e2f1beef2c
Fix some tests
2016-06-14 22:03:24 -04:00
James Agnew
f3dcc3e893
Add lots of tests
2016-06-14 17:57:08 -04:00
James Agnew
dba470f8d6
Add some tests
2016-06-14 07:24:03 -05:00
James Agnew
aac914df22
Refactor OperationParameter to try and improve test coverage
2016-06-14 07:11:47 -05:00
James Agnew
1166a2ee67
Work on support for _at parameter in history operation
2016-06-13 07:31:25 -05:00
James Agnew
69572f7b3a
More tests for #381
2016-06-11 13:04:58 -05:00
James Agnew
23840ecb7a
Fix some tests
2016-06-11 06:43:27 -05:00
James Agnew
035ed27dab
Fix #380 - Correct cardinality for OperationDefinitions
2016-06-10 17:15:16 -05:00
James Agnew
189038ad08
Fix #267
2016-06-10 10:49:51 -05:00
James Agnew
6c9707b86e
More work on #381
2016-06-10 10:16:10 -05:00
James Agnew
6eca6e5efe
Update ResponseHighlighterInterceptor to emit raw content for
...
_format=xml and _format=json
2016-06-10 10:15:41 -05:00
James Agnew
4cfabfe4a6
Rework tests for #381
2016-06-10 09:29:30 -05:00
James Agnew
a3484f84c1
Work on #381 - Still need to apply these changes to STU3 type
2016-06-09 21:48:53 -04:00
James Agnew
cf1ea276c9
Fix #362 - Dead code in OperationParameter
2016-06-08 14:49:36 -07:00
James Agnew
7123205a83
Fix build
2016-06-07 10:04:37 -07:00
James Agnew
7e57aed5d6
Significant performance enhancements for context startup
2016-06-06 11:15:11 -07:00
James Agnew
99568a4b30
Clean up client fluent param types and add some test coverage
2016-06-05 11:33:43 -04:00
James Agnew
87eabe6bf8
More work on terminology server
2016-06-05 09:40:06 -04:00
James Agnew
d966190f9e
Fix #371 - STU3 server and client should use new sort parameter style
2016-06-04 12:34:44 -04:00
James Agnew
9a42ec16f7
Update license files# Please enter the commit message for your changes. Lines starting
2016-06-02 21:25:05 -04:00
jamesagnew
8a933cd2c2
Remove some cruft from the model
2016-06-01 09:18:38 -04:00
jamesagnew
25f8d8d22d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-01 09:11:06 -04:00
jamesagnew
1b8843aa5e
More work on terminology service
2016-06-01 09:10:47 -04:00
James Agnew
39a96f0258
Fix #374 - Include ETag and Last-Modified headers in response
2016-05-31 13:44:21 -04:00
James Agnew
f45ad117fe
Improve error messages for invalid validate request
2016-05-29 22:23:30 -04:00
James Agnew
eb3b656a5f
Syn RI - Build still failing :(
2016-05-28 12:53:59 -04:00
jamesagnew
eae96983e8
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-05-28 10:37:27 -04:00
jamesagnew
e1e6a0d5b0
Sync model with RI latest version
2016-05-28 10:35:08 -04:00
James Agnew
b4de3aa5dd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-05-27 10:27:27 -04:00
jamesagnew
9ed1bb94f9
Remove some unused code
2016-05-26 21:42:03 -04:00
James Agnew
a5debc07a3
DateTime parser incorrectly parsed times where more than 3 digits of
...
precision were provided on the seconds
after the decimal point
2016-05-25 19:20:51 -04:00
jamesagnew
efe9cd1dd1
Work on term svc
2016-05-24 06:34:06 -04:00
jamesagnew
ee031667c5
Fix #369 - FhirTerser cloneInto method fails if target contains extension
2016-05-23 09:20:40 -04:00
jamesagnew
de65184afb
Fix tests
2016-05-21 20:52:37 -04:00
jamesagnew
20b6994cc8
Fix #364 - Allow serializing custom types that contain custom datatypes
2016-05-21 14:35:10 -04:00
jamesagnew
3d8776f6ed
Fix #363 - Allow remote references in JPA resources
2016-05-21 12:58:04 -04:00
James Agnew
6c3446dee1
Fix build
2016-05-17 11:30:57 -04:00
jamesagnew
ddb35d0faa
Merge branch 'term_svc' of github.com:jamesagnew/hapi-fhir into term_svc
2016-05-17 09:05:47 -04:00
jamesagnew
78fa6eaeaf
More work on terminology service
2016-05-17 09:05:37 -04:00
James Agnew
7942d69d5d
Accept conditional updates with _id as parameter
2016-05-16 19:11:25 -04:00
jamesagnew
c7d191dc38
Fix all tests
2016-05-14 16:59:31 -04:00
James Agnew
d5e2170595
Don't discard _count from parameters when method has @Count
2016-05-13 19:13:39 -04:00
James Agnew
563f4e4c46
Treat date eq params correctly
2016-05-13 18:49:41 -04:00
James Agnew
84a7856c19
Treat missing ID in resource body as warning
2016-05-13 18:04:07 -04:00
James Agnew
abd8bc2f14
Work on term svc
2016-05-13 17:40:56 -04:00
James Agnew
c94f4bb19b
Work on term services
2016-05-11 06:30:45 -04:00
James Agnew
3e77d3e37e
Add _has support (this is an experimental parameter being tested)
2016-05-10 11:47:30 -04:00
James Agnew
81cb769d18
Allow operation names to be escaped in URL
2016-05-07 19:28:36 -04:00
James Agnew
af2b702aa4
Fixes from Montreal connectathon
2016-05-07 14:24:33 -04:00
Virdulys
2cf79d2767
Wrong comment, unable to set type in new versions
2016-05-05 15:23:50 +03:00
James Agnew
03e90b90c0
Merge pull request #359 from subhrajyotim/master
...
Fix: Add null check in JsonParser, Relax property handling introduced in Jaxp 1.5
2016-05-05 07:09:06 -04:00
James Agnew
ad9ff20f8e
Merge pull request #355 from euvitudo/jaxrsserver-with-dstu3
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Updated jaxrsserver base and example for DSTU3
2016-05-05 06:58:17 -04:00
James Agnew
82c1e687fd
Fix NPE in LoggingInterceptor
2016-05-04 11:48:50 -04:00
James Agnew
ff562a3f00
Fix #360 - Correctly parse spaces in URL parameters
2016-05-04 10:09:02 -04:00
jamesagnew
b4d3a7bb74
Don't highlight AJAX requests
2016-05-04 06:59:28 -04:00
Subhro
284f0f14b0
Fix: Add null check in JsonParser, Relax property handling introduced in Jaxp 1.5 for some compatibility with existing 1.4 version
2016-05-04 15:24:36 +05:30
jamesagnew
244cad6224
Allow validator exceptions to be ignored via confoguration
2016-05-03 21:58:09 -04:00
jamesagnew
cce0ce6b8e
Add parser for URL parameters to avoid Servlets using ISO-8859-1 instead of UTF-8
2016-05-03 08:58:56 -04:00
James Agnew
804149205a
Work on getting tests passing
2016-05-02 11:42:55 -04:00
James Agnew
c90795ccef
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-05-02 09:03:48 -04:00
jamesagnew
27ec35338a
Update to latest structure defs and validator
2016-05-01 21:31:14 -04:00
jamesagnew
e3e81ff202
Fix #352 - Client should auto download resource if server ignores prefer header
2016-05-01 09:30:12 -04:00
Phillip Warner
31d16fca03
Updated jaxrsserver base and example for DSTU3
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Added support for specifying DSTU3 in the constructors, where the default is DSTU2, to maintain backwards compatibility.
Updated interface usage to IBase... (e.g., IResource -> IBaseResource), which is compatible with DSTU3.
Added tests specifically for DSTU3; kept the existing tests as DSTU2.
Provided examples for DSTU3.
2016-04-29 12:50:15 -06:00
James Agnew
2d81612cd8
Fix #350 - Correct serialization for custom types which have fields
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replacing other fields
2016-04-28 13:25:20 -04:00
jamesagnew
8b3dd4234c
Fix tests
2016-04-25 08:01:16 -04:00
jamesagnew
3fce4cb087
Fix #344 - make getResourceDefinition(String) and getElementDefnition(String) case insensitive
2016-04-25 07:19:31 -04:00
jamesagnew
d45a9b67dc
Allow forced IDs to be reused between resource types
2016-04-24 19:24:55 -04:00
jamesagnew
514da88787
Improve performance in parser when parsing large bundles
2016-04-23 13:54:16 -04:00
jamesagnew
3eb805fb0a
Respect _format=application/xml+fhir
2016-04-23 12:17:27 -04:00
jamesagnew
941091dbf7
Deprecate fluent search without an explicit bundle type declaration
2016-04-23 10:15:13 -04:00
jamesagnew
d76e0008ac
Fix #342 - The HTTP 400 if request fail to parse
2016-04-22 07:19:57 -04:00
jamesagnew
38e80531bb
Bump version to 1.6-SNAPSHOT
2016-04-22 07:05:05 -04:00
jamesagnew
dd3f1dd33c
Fix #345 - ResponseValidatingInterceptor throws an exception with response has no content
2016-04-22 07:04:14 -04:00
jamesagnew
fcf0604e98
Site doc updates
2016-04-21 07:15:01 -04:00
James Agnew
2c665d1b39
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-19 21:58:37 -04:00
James Agnew
81fa46820a
Correctly support _summary=search option
2016-04-19 21:58:20 -04:00
jamesagnew
3a0de6e6f8
Fix #339 - Disable XXE XML parsing vulnerability
2016-04-19 07:55:24 -04:00
James Agnew
153c3ac5aa
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-18 10:07:22 -04:00
James Agnew
54f89073fe
Add option to validation uploader to specify FHIR version
2016-04-18 10:07:09 -04:00
jamesagnew
f3a41570d3
Try to get tests workign on Travis.. yet again
2016-04-17 19:25:11 -04:00
jamesagnew
846e216c04
Fix tests
2016-04-17 12:58:36 -04:00
jamesagnew
5a818a38e8
FIx tests
2016-04-17 10:49:16 -04:00
jamesagnew
1af65ff5a8
Fix #335 (also fixes #336 ) - Correctly parse and serialize IDs on elements within a resource
2016-04-17 10:12:34 -04:00
jamesagnew
3f2b5fdeb7
Get security interceptor working
2016-04-16 10:22:43 -04:00
jamesagnew
533c0c87ab
Fix tests
2016-04-14 09:14:32 -04:00
jamesagnew
72640dc720
Correct encoding order for DSTU2 resources
2016-04-14 07:53:37 -04:00
jamesagnew
8a37ed3b59
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-14 06:38:08 -04:00
jamesagnew
0780b7e472
Add tests
2016-04-14 06:36:29 -04:00
James Agnew
a090f5481f
Try to get cobertura working
2016-04-13 10:33:58 -04:00
James Agnew
072ec29f13
Fix build error
2016-04-11 10:52:27 -04:00
jamesagnew
d7c683f6b9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-11 09:08:34 -04:00
jamesagnew
2f37015d57
Clean up parsers so that elements are always encoded according to their order in the structures that contain them
2016-04-11 08:36:12 -04:00
James Agnew
88157fe1a6
Test data uploader fixes
2016-04-08 16:31:42 -04:00
jamesagnew
5cd13bc73f
Improve error logging when the wrong version structure is passed into a parser
2016-04-07 13:55:38 -04:00
James Agnew
39fc134482
Fix #326 - Correctly serialize DSTU3 references in JsonParser. Thanks to
...
@fw060 for the patch!
2016-04-05 16:33:29 -04:00
jamesagnew
079f966086
Parser enhancements when parsing bundles
2016-04-05 08:59:24 -04:00
jamesagnew
891dddff1e
Work on auth interceptor
2016-04-04 06:21:49 -04:00
jamesagnew
45390ebc89
Don't parse 1974-12-25+10:00 as this is not a valid FHIR time
2016-04-03 18:45:08 -04:00
jamesagnew
20e04a7c80
Merge branch 'dstu3_structs'
2016-04-03 18:16:02 -04:00
jamesagnew
18b3d0df65
Update to DSTU3 Montreal definitions
2016-04-03 18:14:31 -04:00
jamesagnew
6d0dcc0213
More work on auth module
2016-04-02 08:59:01 -04:00
James Agnew
c345209ce4
Fix #318 - Apply setDefaultTypeForProfile to contained resources
2016-04-01 17:10:49 -04:00
James Agnew
21b42acc94
Update licenses
2016-03-29 13:01:51 -04:00
James Agnew
46ba27ec8f
Work on security interceptor
2016-03-28 20:51:27 -04:00
James Agnew
b2f11e0bfc
Fix #317 - Allow search params to be used when doing REST operations
2016-03-26 13:44:54 -04:00
James Agnew
6ffb1c8c56
Fix #312 - Don't fail if extension list contains a null
2016-03-25 19:27:18 +01:00
James Agnew
f49130baf8
Add unit tests and documentation to the JAX-RS client implementation
2016-03-25 19:17:41 +01:00
James Agnew
f9fa6265df
Correctly handle JPA search by token with system but no code
2016-03-25 16:20:43 +01:00
James Agnew
c6f06548fc
Fix #315 - Use custom types for searches and other client operations
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when requested
2016-03-24 11:09:41 +01:00
James Agnew
1adfc4b4d9
Fix #315 - Allow declaring of custom types for specific profiles
2016-03-22 11:46:08 +01:00
James Agnew
ab4deb406c
Allow runtime query of bound enum type
2016-03-18 19:41:43 +01:00
James Agnew
82c6d82444
Sere up Binary resources as binary content even if the browser puts
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application/xml in the Accept header
2016-03-18 18:38:44 +01:00
jamesagnew
9aa7eea274
Add mode to parser to force it to not encode certain elements when serializing
2016-03-16 07:53:21 -04:00
James Agnew
00ced6a652
Improve performance of _lastUpdated queries in JPA server
2016-03-14 06:31:45 -04:00
James Agnew
6ddf91d9e2
Correctly handle extended operation in annotation based client where the
...
response is a raw resource and not a Parameters resource
2016-03-12 15:10:02 -05:00
James Agnew
452316aed7
Fix #313 - Do not treat OPTIONS [base]/foo as a request for server's
...
conformance statement. Thanks to Michael Lawley for reporting!
2016-03-12 14:53:20 -05:00
James Agnew
ce253bed70
Properly deserialize bound codes
2016-03-12 13:23:55 -05:00
jamesagnew
232afee955
Improved error messages for #305
2016-03-11 07:56:00 -05:00
jamesagnew
ed92f64e52
Fix #305 - Don't allow update resource body IDs to be missing or incorrect
2016-03-10 07:44:05 -05:00
jamesagnew
3897167518
Return correct bundle type on $everything operation
2016-03-09 23:11:40 -05:00
James Agnew
8de41ca8b4
Attempting to reduce memory usage during tests
2016-03-06 14:38:18 -05:00
jamesagnew
99a4b2c29e
Refactor JPA SearchBuilder
2016-03-05 20:46:04 -05:00
jamesagnew
b147083f5a
Fix #308 - Remove unneded warning on parsing declared extension
2016-03-02 22:18:33 -05:00
jamesagnew
970bc3ed89
One more test for #304
2016-03-02 07:29:09 -05:00
jamesagnew
94f50686bc
Fix #304 - Better error message if wrong generic type is used
2016-03-02 07:06:17 -05:00
jamesagnew
3fd9f9518a
Handle unexpected extensions when parsing using IParserErrorHandler
2016-03-02 06:52:46 -05:00
jamesagnew
496d866f48
Fix #274 - Primitive elements with no value but an extension were sometimes not encoded correctly in XML, and sometimes not parsed correctly in JSON.
2016-02-28 22:15:43 -05:00
jamesagnew
66ec863bde
Fix build
2016-02-28 21:19:39 -05:00
jamesagnew
ed5bffba9e
Fix #299 - Don't crash if the client receives extensions in Bundle.entry.search
2016-02-28 19:38:54 -05:00
jamesagnew
c7d3f39457
Fix #296 - Handle :missing qualifier on QuantityParam
2016-02-28 18:32:43 -05:00
jamesagnew
d8c571dfdc
Just some cleanup
2016-02-28 18:25:20 -05:00
jamesagnew
c14a1330b4
Fix #302 - Don't crash server when adding profiles
2016-02-28 16:07:28 -05:00
jamesagnew
524b16b1e8
Fix header generation for clients
2016-02-28 15:44:10 -05:00
jamesagnew
1da5855c9c
Add Eclipse files to git
2016-02-28 14:02:29 -05:00
jamesagnew
f1e1ee9ff9
Merge JAX-RS client fixes
2016-02-28 13:34:57 -05:00
jamesagnew
69450c7dab
Merge branch 'master' into jaxrs-client
2016-02-27 09:48:36 -05:00
James Agnew
7fdbee6f21
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-26 18:20:32 -05:00
James Agnew
39f6420066
Start working on compartment support
2016-02-26 18:16:35 -05:00
James Agnew
d383b402d1
Correct handling of Binary resources in client and server where the
...
binary contains embedded FHIR content
2016-02-25 14:31:26 -08:00
James Agnew
4a26064cd6
In the client, the create/update operations on a Binary resource (which
...
use the raw binary's content type as opposed to the FHIR content type)
were not including any request headers (Content-Type, User-Agent, etc.) Thanks to Peter Van Houte of Agfa Healthcare for reporting!
2016-02-25 12:54:52 -08:00
James Agnew
d11cbab15c
Don't add WWW-Authenticate header to response on AuthenticationException
2016-02-25 11:03:04 -08:00
petervanhoute
d64cf57b0d
Inclusion of jaxrs-client : complete removal of the dependencies for jaxrsserver project to apache httpclient and httpcore and only rely on jax-rs
2016-02-25 13:38:31 +01:00
petervanhoute
f8ea639af9
Merge remote-tracking branch 'remotes/petervanhoute/jax-rs-client': inclusion of jaxrs client by addition of interfaces around the apache client classes
2016-02-24 18:04:49 +01:00
James Agnew
1ba0ae3960
Support inline match URL references, per Simone's requast for the next
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connectathon
2016-02-23 13:12:30 -08:00
jamesagnew
fd2eaff12d
Fix javadoc
2016-02-19 06:53:23 -05:00
jamesagnew
6ce4056f7a
Fix #298 - Don't handle /metadata for methods other than GET
2016-02-19 06:40:07 -05:00
jamesagnew
43bdfc0345
Fix #297 - Resource not populated in ActionRequestDetails for validate method
2016-02-19 06:21:05 -05:00
jamesagnew
4975d212fa
Add userdata map to interceptors which can be passed around
2016-02-17 08:05:55 -05:00
jamesagnew
9b304748ad
Work on terminology service
2016-02-16 21:29:00 -05:00
jamesagnew
c1141eb18f
Reorganize how search param prefixes are handled and modelled based on new DSTU2 style prefixes
2016-02-15 10:05:39 -05:00
jamesagnew
23f9292b50
Add support for comments in XML and JSON parsing/encoding
2016-02-08 22:05:17 -05:00
James Agnew
961cde41bd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-08 14:22:20 -05:00
James Agnew
f21851099c
Version bump
2016-02-08 13:59:09 -05:00
jamesagnew
d93c54c0aa
Version bump to 1.5
2016-02-06 14:18:56 -05:00
jamesagnew
0ff111be87
Fix #291 - Don't fail the server for untyped list returns
2016-02-06 14:18:04 -05:00
petervanhoute
f9e4398c89
fix pom
2016-02-05 14:59:10 +01:00
James Agnew
68b816dce7
Prepare for 1.4 release
2016-02-03 16:56:32 -05:00
James Agnew
e0e52f96c6
Version bump to 1.4 (finally!)
2016-02-03 15:25:32 -05:00
James Agnew
def7fc93e0
Merge pull request #289 from petromykhailysyn/master
...
ServletContextPath can start with servletPath, it should be taken into consideration
2016-02-03 14:06:18 -05:00
jamesagnew
93d9011691
Fail server if conditional param is not of type String
2016-02-02 07:11:18 -05:00
jamesagnew
32daeb6f58
Switch DSTU2.1 to DSTU3 per FMB's decision
2016-02-01 08:55:58 -05:00
James Agnew
914f615b8e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-28 11:35:16 -05:00
jamesagnew
ecc48317f2
Version bump dependencies
2016-01-28 08:31:19 -05:00
jamesagnew
00f0ea4a0b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-27 08:36:10 -05:00
jamesagnew
1bc35f1ba3
Support modifiers on token parameters
2016-01-27 07:05:41 -05:00
petromykhailysyn
a7313023f7
Revert "If servletContextPath is not root (application is deployed not to the root) we should take it into consideration while determinating server base."
...
This reverts commit 0e3bb5a797
.
2016-01-26 17:02:24 +02:00
petromykhailysyn
83823aad35
ServletContextPath can start with servletPath, now it's taking into consideration while determinate contextIndex.
2016-01-26 16:29:16 +02:00
James Agnew
7ed14d538a
Remove warning
2016-01-24 14:53:40 -05:00
petromykhailysyn
0e3bb5a797
If servletContextPath is not root (application is deployed not to the root) we should take it into consideration while determinating server base.
2016-01-22 10:42:36 +02:00
Matt Blanchette
0f835b5e55
Exposing http client request pool max parameters on restful client factory:
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* added setters on restful client factory to allow changing max total connections and max connections per route for pooling http connection manager
* added defaults for max total connections and max connections per route on restful client factory interface
2016-01-20 11:50:49 -05:00
jamesagnew
1ba03f4a9b
Fix #283 - Remove servlet 3.0 dependency where possible
2016-01-20 08:11:03 -05:00
jamesagnew
944afc2785
Add better constructors for date types
2016-01-20 07:40:57 -05:00
James Agnew
f9960b22d5
Clean up validation
2016-01-15 18:44:28 -05:00
James Agnew
d290110126
Fix validation
2016-01-15 18:02:20 -05:00
James Agnew
589059256f
Correct issues uncovered during connectathon
2016-01-11 07:42:13 -05:00
petervanhoute
8dadc77420
create jax-rs client
2016-01-08 12:01:56 +01:00
petervanhoute
b6d3a003d3
move client api-classes into api package
2016-01-08 11:47:00 +01:00
petervanhoute
1271c36d1b
create a jax-rs client
2016-01-08 10:50:04 +01:00
James Agnew
c1afb4f54d
Get overlay working for DSTU2.1
2016-01-07 15:04:56 -05:00
James Agnew
0c8c414784
Try to get travis working
2016-01-07 11:17:54 -05:00
James Agnew
479da24cfb
Bump license files
2016-01-07 08:50:07 -05:00
James Agnew
a54cb06c03
More travis cleanup
2016-01-06 14:02:20 -05:00
jamesagnew
56620eebfb
Clean up testpage-overlay to work with DSTU2.1
2016-01-06 08:49:24 -05:00
James Agnew
2e434650ea
Fixed to testpage overlay for DSTU2.1
2016-01-05 17:02:37 -05:00
jamesagnew
b7aa4e15b9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-05 08:31:24 -05:00
jamesagnew
59da230702
Improving validation documentation
2016-01-05 07:20:54 -05:00
James Agnew
7005cd52d9
Performance tweaks to the validator and get the DSTU2.1 endpoint working
...
with validation
2016-01-04 17:57:00 -05:00
jamesagnew
685bd9345b
Add request/response validator interceptors
2016-01-03 21:52:11 -05:00
jamesagnew
5789db8743
Remove dependency on cobertura at compile time
2016-01-02 10:55:52 -05:00
jamesagnew
c8365ab566
Fix build
2016-01-01 23:18:44 -05:00
jamesagnew
718a26671f
DSTU2.1 structures working
2016-01-01 16:59:19 -05:00
jamesagnew
056900f324
Lots more work on DSTU2.1 structures
2015-12-30 11:27:12 -06:00
jamesagnew
7692e5d714
More work on DSTU2.1 structs
2015-12-22 09:32:06 -05:00
jamesagnew
2469aa3725
Lots of DSTU2.1 structure work
2015-12-20 23:35:47 -05:00
jamesagnew
aaf85f2323
Lots of work on DSTU2.1 structures
2015-12-20 09:29:52 -05:00
jamesagnew
6ac62a5b46
Merge branch 'master' into hl7org_dstu21
2015-12-15 20:33:31 -05:00
jamesagnew
3005c9a766
Still working on unit tests
2015-12-15 09:11:01 -05:00
jamesagnew
22ff1db183
Work on tests
2015-12-15 07:14:21 -05:00
jamesagnew
2b0a800d98
travis....
2015-12-14 22:44:05 -05:00
jamesagnew
c8535b72b6
More travis
2015-12-14 22:34:53 -05:00
jamesagnew
0bf5172de6
More travis work
2015-12-14 22:28:03 -05:00
jamesagnew
b2a9836cda
More logging to try and figure out the travis failures
2015-12-14 22:12:54 -05:00
jamesagnew
a623003a56
Fix #240 - Support target resource type in server _include and _revinclude values
2015-12-14 21:50:35 -05:00
jamesagnew
d95bd269c0
Correctly encode value[x] field names when the datatype is a profiled type such as markdown
2015-12-14 21:04:27 -05:00
James Agnew
2eaa1eddae
Fix compile
2015-12-14 18:22:21 -05:00
James Agnew
9ef0498775
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-12-14 10:56:33 -05:00
jamesagnew
97d6d09663
Work on #240 - Not yet working in JPA
2015-12-14 08:17:33 -05:00
James Agnew
68bb244328
Lots of work on new structures
2015-12-13 22:44:41 -05:00
James Agnew
117f9eb977
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-12-10 08:24:30 -05:00
James Agnew
85ec9d9264
Work on 2.1 structures
2015-12-10 08:24:12 -05:00
jamesagnew
0a0daedcfd
Still not working DSTU2.1
2015-12-09 22:49:02 -05:00
jamesagnew
67eb06665e
Work on test indexing
2015-12-03 22:41:37 -05:00
jamesagnew
8ed9ca83af
Fix build
2015-12-03 21:52:40 -05:00
James Agnew
547b5290a4
Update resource defs
2015-12-01 18:35:24 -05:00
James Agnew
4398040451
Add count(int) method to fluent client search
2015-12-01 10:22:50 -05:00
jamesagnew
07078e4ce3
Add GZip support to client and server for client-to-server uploads
2015-11-29 15:03:28 -05:00
jamesagnew
d47e0e5e77
Add DSTU2.1 resources
2015-11-29 11:43:09 -05:00
jamesagnew
e6b47855e6
Merge branch 'master' of git://github.com/petervanhoute/hapi-fhir into petervanhoute-master
2015-11-27 14:59:53 -05:00
jamesagnew
00be143207
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-11-26 07:03:14 -05:00
James Agnew
a046afe1d0
Merge pull request #259 from nrpeterson/boundcodeableconcept-serialization
...
Add serializability for BoundCodeableConceptDt
2015-11-26 06:59:14 -05:00
jamesagnew
14e326c2bd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-11-26 06:57:08 -05:00
jamesagnew
9c9ffe1fb7
Remove dependency on JDK 7
2015-11-26 06:56:52 -05:00
James Agnew
1fe3bb9ff0
Updates from DevDays
2015-11-23 06:13:02 -05:00
Nick Peterson
13b3601843
Make IBoundCodeableConcept and IValueSetEnumBinder extend java.io.serializable; add a test to verify that MaritalStatusCodesEnum in DSTU2 is now serializable.
2015-11-20 12:15:31 -08:00
James Agnew
c78be081ef
Add CLI test
2015-11-20 10:30:10 +01:00
James Agnew
2f12c9ed01
Bump version to 1.4-SNAPSHOT
2015-11-15 20:11:05 -05:00
James Agnew
f9f33f059b
Version bump to 1.3
2015-11-15 12:53:02 -05:00
jamesagnew
6fd5aecec7
Fix #250 - Honour Accept: text/xml and Accept: text/json
2015-11-05 07:32:33 -05:00
jamesagnew
3fc7a16735
Fulltext searching works
2015-11-02 08:12:36 -05:00
petervanhoute
63db1b646f
test in weblogic: fix interceptor + stateless on abstract
2015-10-30 11:35:11 +01:00
James Agnew
2cc88d76eb
Cleasn up JPA interceptors
2015-10-29 16:44:51 -04:00
James Agnew
d3685e72ba
Fix #241 and fix #247 - Don't encode UUID IDs on resources, and preserve
...
bundle type when retrieving pages
2015-10-29 15:38:19 -04:00
petervanhoute
367163c46a
fix return url
2015-10-29 15:55:37 +01:00
petervanhoute
a262bf64d0
fix paging
2015-10-29 15:54:09 +01:00
jamesagnew
65598c200e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-28 07:39:18 -04:00
jamesagnew
5a2ee77142
Parser (XML and JSON) shouldn't encode an ID tag in resources
...
which are part of a bundle when the resource has a UUID/OID
ID.
2015-10-26 22:47:06 -04:00
jamesagnew
69658ab754
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-23 08:22:40 -04:00
jamesagnew
eea406e10e
ResourceReferenceDt#loadResource(IRestfulClient) did not
...
use the client's read functionality, so it did not
handle JSON responses or use interceptors. Thanks to
JT for reporting!
2015-10-23 08:21:25 -04:00
jamesagnew
e93f7542a5
Remove unused check
2015-10-23 07:22:15 -04:00
James Agnew
8d515feb6d
Fix #242 - Allow compartment and read method to coexist for server
2015-10-21 11:58:19 -04:00
James Agnew
5edd290013
More work on JPA server transactions
2015-10-20 10:52:29 -04:00
James Agnew
ae416dcd62
Improve nexted search/read handing in transactions in JPA server
2015-10-20 10:35:18 -04:00
James Agnew
6729ea0479
Work on support for transaction searches with paging in JPA
2015-10-19 20:21:06 -04:00
James Agnew
e9d18af5d9
Bump library versions
2015-10-14 18:11:52 -04:00
James Agnew
0430eb1626
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-13 12:13:43 -04:00
jamesagnew
6d93cbcaae
Get content search working correctly
2015-10-13 09:18:34 -04:00
James Agnew
a2bf374470
Merge pull request #239 from botunge/master
...
Make dependencies truly optionel and clean up android pom.
2015-10-12 20:06:24 -04:00
jamesagnew
81a90ecca8
Temporarily restore file
2015-10-12 20:05:21 -04:00
jamesagnew
cb886c2975
Remove unused BeanUtils
2015-10-12 19:54:23 -04:00
jamesagnew
b827823004
Improve efficiency of JPA queries with _lastUpdated
2015-10-12 09:32:25 -04:00
James Agnew
16989435b0
Don't export a _format on paging links if the request didn't have one
2015-10-09 17:42:45 -04:00
jamesagnew
588016e406
Merge branch 'master' into fulltext
2015-10-09 09:15:48 -04:00
James Agnew
4dbd180cf6
Clean up testing
2015-10-08 17:38:14 -04:00
petervanhoute
1afaea81d6
rename jax-rs classes + add unit tests to example project
2015-10-08 09:08:22 +02:00
petervanhoute
7f910974a2
create seperate response and server interfaces and classes for servlets and jaxrs
2015-10-07 17:11:16 +02:00
jamesagnew
ad868038a8
Work on Lucene searching
2015-10-07 09:01:32 -04:00
James Agnew
9fef4f6bab
Allow valueset operations to work against type in JPA
2015-10-06 18:53:09 -04:00
Thomas Andersen
828a7966c7
some more test
2015-10-06 22:13:18 +02:00
Thomas Andersen
7ad5d6bba8
Move dependency on java.util.jar and java.beans to optional dependency
...
Move some more dependencies to optionel dependencies and write more test
for different base methods.
2015-10-06 22:13:15 +02:00
James Agnew
b62eb1168c
Allow server operations to work at the type level
2015-10-06 11:45:49 -04:00
James Agnew
80575b5380
Generic client now allows search by URL
2015-10-05 15:30:30 -04:00
Thomas Andersen
91afb99b7b
make sure hapi fhir base creates sources jar
...
In order to streamline build of android jar with dependencies all
dependencies should publish a sources jar also.
2015-10-05 21:18:59 +02:00
James Agnew
43aad1eb98
Properly support chains in JPA conditional URLs
2015-10-04 15:38:58 -04:00
Thomas Andersen
e040ef3f43
Merge remote-tracking branch 'upstream/master'
2015-10-04 21:07:46 +02:00
Thomas Andersen
64b70d412a
move schematron validator to sub package
2015-10-04 21:05:55 +02:00
Thomas Andersen
f4f57fd480
Make dependencies truly optionel + clean up / minimize android build
...
both Phloc and Schematron was not truly optionel since they was referred
from different files. So the references has been moved to a factory and
ObjectUtil extended for some of the missing methods, where Schematron
was used. Android pom file is cleaned so that all artifcates are build
using the same base configuration and then schematron, phloc and some
server components have been removed from artifact to minimize android
artifacts.
2015-10-04 21:05:30 +02:00
James Agnew
48d56b4722
Fix connectathon discovered issues
2015-10-03 23:52:30 -04:00
James Agnew
c666b9c196
Fix compile issues
2015-10-03 16:11:47 -04:00
James Agnew
e7e8f8dd81
Use correct status codes for failed deletes, and support multi delete in
...
JPA
2015-10-02 18:18:54 -04:00
James Agnew
aa32e6f0a9
Improve ValueSet operations in JPA
2015-10-02 12:37:56 -04:00
petervanhoute
b4df6f9612
add server using jaxrs
2015-10-02 11:27:21 +02:00
Thomas Andersen
9560ab8dd2
Remove server code from android client and make android client smaller
2015-10-02 00:13:19 +02:00
James Agnew
119a4f36d9
Add error checking and better handling for match URLs in JPA server
2015-10-01 16:54:34 -04:00
jamesagnew
900c93949a
Work on subscriptions, and correct indexing of codes in JPA
2015-10-01 08:56:17 -04:00
jamesagnew
f9e4a3e1b5
Fix #233 - elementQuantity gets incorrectly encoded as elementDuration
2015-09-29 19:41:31 -04:00
James Agnew
ca8c257833
Support lastupdate filtering and sorting on JPA everything operation
2015-09-29 13:24:33 -04:00
James Agnew
1cc6a05273
FIx validation for resources using v2 tables
2015-09-29 10:51:36 -04:00
jamesagnew
9492744018
Work on subsciprions
2015-09-28 09:06:57 -04:00
James Agnew
51a046ea26
Handle sort by number, uti and token
2015-09-25 16:53:22 -04:00
James Agnew
1361e69177
Respect server default encoding if an Accept header is received which
...
indicates equal weight for both encodings
2015-09-24 17:52:52 -04:00
James Agnew
072c1ece87
Send Accept header on client requests, and allow string responses in
...
QuestionnaireResponse validator for questions of type OPENCHOICE
2015-09-24 13:40:07 -04:00
James Agnew
bd4d7e276f
Fix tests
2015-09-24 10:10:05 -04:00
jamesagnew
70eff0dc7f
Improve error message when $meta-add and $meta-delete are called with no meta element in the
...
input parameters. Also improve OperationOutcome rendering in narrative generator.
2015-09-24 08:36:25 -04:00
jamesagnew
7e6844be56
Improve error message when JSON parser finds an object where an array is expected
2015-09-24 07:27:43 -04:00
jamesagnew
a15ed8e944
Work on subscriptions, and correct an issue with DateRangeParam where comparators get ignored
2015-09-23 08:36:11 -04:00
jamesagnew
ec8b3b68f6
Work on subscription
2015-09-22 08:06:23 -04:00
jamesagnew
04c2cce13f
Start working on JPA subscriptions
2015-09-21 09:08:19 -04:00
jamesagnew
70e942e9f8
Version bump to 1.3-SNAPSHOT
2015-09-19 11:00:57 -04:00
James Agnew
00bf8231ba
Upgrade coveralls plugin
2015-09-16 14:02:56 -04:00
jamesagnew
31934ff582
Version bump to 1.2
2015-09-16 07:09:03 -04:00
James Agnew
73121e222c
Add tests
2015-09-15 14:11:55 -04:00
jamesagnew
3f7e4374b7
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-09-15 09:09:29 -04:00
jamesagnew
d0bac3d419
Work on CLI tool
2015-09-13 22:06:31 -04:00
jamesagnew
780fc871cb
It should not be possible to search for deleted resources using the _tag, _id, _profile, or _security search parameters
2015-09-13 09:42:41 -04:00
jamesagnew
48ee2cbee8
JPA server now correctly suppresses contents of deleted resources
...
in history
2015-09-12 09:45:12 -04:00
Bryce Van Dyk
8c9e4ff39a
Adjust the checkstyle location to play nice on Win
...
Removed the file:// prefix on the checkstyle config location, this is
needed for the site build to work on Windows. I've tested this on Linux,
though not as thouroughly.
2015-09-12 16:46:29 +12:00
jamesagnew
847b382ee8
Add tests
2015-09-10 07:51:13 -04:00
jamesagnew
8120ab2228
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-09-09 22:46:48 -04:00
jamesagnew
437625505c
Add some tests and some cleanup of unused code
2015-09-09 22:41:10 -04:00
James Agnew
1961042d11
Remove useless warning
2015-09-09 16:16:18 -04:00
James Agnew
2a3088f2e2
Add tests
2015-09-09 16:08:21 -04:00
jamesagnew
aa8334a99a
Merge remote-tracking branch 'upstream/master' into osgi-pull-request
2015-09-09 08:41:45 -04:00
bdenton
9de81a1bd8
Providers can bedynamicaly registered at runtime
2015-09-09 07:01:15 -04:00
bdenton
daedf63c46
Decouple RestfulService and ServerConformanceProvider to avoid cycle in
...
Spring wiring
2015-09-09 07:01:03 -04:00
James Agnew
c534fb9604
Hopefully tests should pass now - Not using profile datatypes in encoded
...
choice names has been a pain!
2015-09-08 14:00:11 -04:00
James Agnew
69596abdc9
Once more fixing the build
2015-09-08 10:31:47 -04:00
jamesagnew
a733ad0949
Fix build
2015-09-08 08:58:23 -04:00
jamesagnew
403fe28bd8
FIx build
2015-09-08 08:32:33 -04:00
jamesagnew
bb5816d8e9
Fix second part of #216 - Correctly encode choice elements on profiled datatypes
2015-09-08 08:01:51 -04:00
jamesagnew
9af3fcf02d
Allow browser requetsts to force a raw response
2015-09-07 21:52:35 -04:00
jamesagnew
08633066c6
Fix #216 - Unexpected attributes when parsing composite elements should be logged
2015-09-07 10:08:11 -04:00
James Agnew
abdfb50b40
Fix a few tests and don't crash on old Woodstox
2015-09-04 13:59:57 -04:00
jamesagnew
773608f860
Validation documentation
2015-09-04 08:22:06 -04:00
jamesagnew
8b20f3a77d
Sync to 1.0.0 FHIR definitions
2015-09-03 08:07:43 -04:00
James Agnew
97e6073665
Support URI (and prepare for lat/lon search params) in JPA server, and
...
don't store duplicate tags
2015-09-01 17:02:35 -04:00
de Beaubien, Bill
bac4c4a2e9
Fix #214 - added totalResults to the hash of valid dstu1 keywords
2015-09-01 09:58:25 -04:00
jamesagnew
f04147dcfd
Fix compile problem
2015-09-01 07:07:45 -04:00
jamesagnew
e8f5451cc9
Fix a few issues found by FindBugs
2015-09-01 07:05:27 -04:00
James Agnew
08b19f55ad
Merge pull request #213 from SingingTree/javadocs_reference_github
...
Update Javadocs to reference Github docs
2015-08-31 16:18:38 -04:00
jamesagnew
a9f978a8a2
Udate to latest DSTU2 definitions
2015-08-31 08:20:24 -04:00
Bryce Van Dyk
eb7b405419
Update Javadocs to reference Github docs
...
Several Javadoc comments still reference the old Sourceforge based
documentation. These have been updated to point to the Github based
documentation where relevant, or removed in one case where the Github docs
do not appear to have such a section.
2015-08-31 18:46:05 +12:00
James Agnew
98a0d5a07a
Delete old deprecated classes
2015-08-28 18:19:16 -04:00
James Agnew
eaa2519696
iAdd some tests
2015-08-28 18:00:32 -04:00
James Agnew
110abf7cb2
Switch from Cobertura to JaCoCo
2015-08-28 17:06:56 -04:00
James Agnew
bd13b53099
Fix #212 - Dont accept invalid IDs but do accept IDs starting with a
...
number
2015-08-28 15:36:56 -04:00
jamesagnew
073fa47807
Add support for _include:recurse behaviour
2015-08-27 19:44:51 -04:00
James Agnew
1577859340
Fix build
2015-08-24 18:46:07 -04:00
James Agnew
2733812535
Fix build
2015-08-24 18:39:49 -04:00
James Agnew
11c5ab7892
More auto qualify resource references
2015-08-24 18:33:28 -04:00
James Agnew
83a57f8e7c
Auto qualify resource IDs
2015-08-24 18:21:34 -04:00
miantorno
a5a18b9a14
DateTimeDt now returns an instance of itself when the TimeZone is set.
2015-08-24 16:48:00 -04:00
James Agnew
df4d371edc
Add profile and security params for generic search
2015-08-24 15:23:28 -04:00
jamesagnew
bec43b3fdc
Fix tests
2015-08-24 08:29:02 -04:00
jamesagnew
60339d6f93
Fix #209 - _revinclude results from JPA server should have a Bundle.entry.search.mode of "include" and not "match". Thanks to Josh Mandel for reporting!
2015-08-23 22:25:25 -04:00
jamesagnew
11376024fa
Fixing test related to summary and elements mode
2015-08-23 21:51:46 -04:00
jamesagnew
44ac164eca
Work on #125 - Support _summary and _elements
2015-08-23 13:29:57 -04:00
James Agnew
7645c240f4
Get instance validator working across FHIR versions
2015-08-20 15:27:24 -04:00
James Agnew
ddc66d3ed0
Add support for $validate-code in JPA server
2015-08-20 14:27:19 -04:00
James Agnew
11f5aeebd9
Clean up the build and hopefully close #206
2015-08-19 11:49:00 -04:00
jamesagnew
6941f92090
Fix #207 - Confusing error message parsing invalid contained resources
2015-08-17 20:46:56 -04:00
James Agnew
c2fba2ce21
More work on interceptors
2015-08-17 18:35:51 -04:00