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504 Commits

Author SHA1 Message Date
James Agnew 91f8c3f26f Fix #103 - Don't encode contained resources unless they are actualy 
referenced somewhere in the resource body
 2015-02-05 12:07:37 -05:00
James Agnew a3be361e40 Add some tests for #82 - Not working, but we have tests at least 2015-01-29 14:37:55 -05:00
James Agnew 6c6685137f Lots of tweaks for DSTU2 support 2015-01-29 11:34:57 -05:00
jamesagnew 9bee09efcd Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-01-27 21:56:23 -05:00
James Agnew f463e0453e Merge pull request #74 from wdebeau1/master 
#73 - added matchesToken method to BaseCodingDt and doesCodingListMatch ...
 2015-01-27 14:57:47 -05:00
jamesagnew c36cbb893d Fix some broken unit tests and do a few documentation updates 2015-01-24 16:17:20 +01:00
jamesagnew e19e96db28 Fix #88 - Client should check which FHIR version the server implements and fail if it is incorrect for the client 2015-01-24 14:51:47 +01:00
jamesagnew 15a57242aa Fix #91 - Unable to add more than two extensions with unknown orders to a custom resource 2015-01-24 07:42:14 +01:00
jamesagnew 0898260232 Add one more test for #93 - I am unable to reproduce this issue so far; I think it may have been resolved as a result of a chackin in 0.8 2015-01-24 01:49:44 +05:30
jamesagnew cc5c014331 Fix #84 - Use multiple <contained/> tags, one for each contained resource instead of putting all contained resources in a single <contained/> tag 2015-01-24 01:39:59 +05:30
jamesagnew 18acda7be2 Get all of the unit tests passing for DSTU1/DSTU2 split 2015-01-24 01:07:09 +05:30
b.debeaubien f7209b45ef #73 - added matchesToken method to BaseCodingDt and doesCodingListMatch to TokenOrListParam 2015-01-12 08:18:36 -05:00
jamesagnew 96fe70de59 Clean up metadata parsing in XML parser 2015-01-10 13:44:40 -05:00
jamesagnew 8f8f9ed308 Server create and update methods failed with an IllegalArgumentException if the method type was a custom resource definition type (instead of a built-in HAPI type). Thanks to Neal Acharya for the analysis. 2015-01-10 07:42:46 -05:00
James Agnew 8e73705000 Work on Android binary - This commit appears huge because the License 
plugin just updated the year on everything to 2015
 2015-01-09 16:15:55 -05:00
James Agnew 6b3d92fde1 Cleaning up JavaDocs to allow building in Java 8 2014-12-30 16:39:38 -05:00
James Agnew 0b44a32910 Fix #69 2014-12-29 17:20:34 -05:00
jamesagnew c73e867736 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 
Conflicts:
	hapi-fhir-jpaserver-uhnfhirtest/src/main/java/ca/uhn/fhirtest/TestRestfulServer.java
 2014-12-29 09:35:34 -05:00
jamesagnew fd8ba68e62 Implementing ETag support 2014-12-29 09:33:36 -05:00
James Agnew 81851f4808 Fix #65 - Correctly parse and encode extensions on non-repeatable 
primitive fields
 2014-12-23 14:10:53 -05:00
jamesagnew 31d61100db Fix #67 - Correctly parse local IDs in IdDt even if they look like real IDs 2014-12-22 22:37:24 -05:00
James Agnew 5a0ef91337 Get public server working with DSTU2 2014-12-22 12:03:02 -05:00
jamesagnew 994e49057d Lots of work on DSTU2 server 2014-12-21 18:13:37 -05:00
jamesagnew 4ca405a8fc Unit tests all pass again, elements in baseresouerce reordered 2014-12-19 09:14:40 -05:00
James Agnew c5d014e9ee More work on getting unit tests passing for DEV resources 2014-12-18 17:34:33 -05:00
jamesagnew 1f3991caf9 Bump version to 0.9-SNAPSHOT 2014-12-17 17:04:10 -05:00
jamesagnew 3963bb68e8 Merge remote-tracking branch 'origin/master' into hl7org_structs 
Conflicts:
	hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/IFhirVersion.java
	hapi-fhir-structures-dstu/src/main/java/ca/uhn/fhir/model/dstu/FhirDstu1.java
 2014-12-17 16:08:59 -05:00
jamesagnew 7e8f81293e Tagging and deploying 0.8 2014-12-17 14:22:10 -05:00
James Agnew 2d5293c2ef Merge pull request #63 from wdebeau1/master 
Fix for #59
 2014-12-17 12:25:07 -05:00
b.debeaubien 4599ec1544 #59 - Even more sorting out profile vs id problem 2014-12-16 13:48:59 -05:00
James Agnew 3b5d4bfe52 Fix accidental failed unit tests from #60 2014-12-16 11:55:45 -05:00
James Agnew 35b5f90318 Merge remote-tracking branch 'origin/master' into hl7org_structs 
Conflicts:
	hapi-fhir-structures-hl7org-dev/.gitignore
 2014-12-16 11:32:58 -05:00
b.debeaubien 8865a77227 #59 - More sorting out profile vs id problem 2014-12-16 11:25:57 -05:00
James Agnew 326aa515a9 Fix #60 - Client did not correctly send charset declaration as a part of 
content-type header on POST/PUT requests
 2014-12-16 11:09:26 -05:00
b.debeaubien d0db838f45 #59 - More sorting out profile vs id problem 2014-12-16 09:25:12 -05:00
James Agnew 551ffb43b4 More work on DEV operations 2014-12-15 17:41:24 -05:00
lmds1 6fe4261daf added a check for null resources in auditing interceptor 2014-12-12 17:29:07 -05:00
b.debeaubien 1501b3e278 #59 - Start of sorting out profile vs id problem 2014-12-12 11:52:04 -05:00
James Agnew 2f7cbeb348 Merge branch 'hl7org_v08' of github.com:jamesagnew/hapi-fhir into hl7org_structs 
Conflicts:
	hapi-fhir-base/src/main/java/ca/uhn/fhir/context/FhirContext.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/context/ModelScanner.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/model/primitive/IdDt.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/JsonParser.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/ParserState.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/XmlParser.java
	hapi-fhir-structures-dstu/src/main/java/ca/uhn/fhir/model/dstu/FhirDstu1.java
 2014-12-11 16:07:00 -05:00
jamesagnew e1aa3f335e Unit tests all pass! 2014-12-10 22:02:31 -05:00
James Agnew 3329a0a5c0 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2014-12-10 15:25:10 -05:00
b.debeaubien da22349b47 Fixed bug in recursive extension scanner caused by the previous fix to the extension scanner 2014-12-10 15:24:54 -05:00
James Agnew 840e004580 Unit test refactor 2014-12-10 15:11:32 -05:00
James Agnew 8ac479b7bd Prevent profile generation issue with multiple resource definition 
classes that share an extension
 2014-12-10 10:40:29 -05:00
b.debeaubien 84ecec2835 Added test demonstrating that using the same extension in 2 different resources causes the profile extension scanner to throw up its hands in despair 2014-12-10 10:24:04 -05:00
James Agnew ecadd83711 Return a better error message if the server finds multiple resource 
providers for the same resource type
 2014-12-04 11:04:53 -05:00
James Agnew 826fa1d7c1 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 
Conflicts:
	hapi-fhir-tutorial/simple-server/src/main/java/ca/uhn/fhir/example/ex3/Example03_PatientResourceProvider.java
	hapi-fhir-tutorial/simple-server/src/main/java/ca/uhn/fhir/example/ex3/Example03_SimpleRestfulServer.java
	src/changes/changes.xml
 2014-12-03 13:49:19 -05:00
James Agnew 3ca9fbbebb Encoding a Binary resource without a content type set should not result 
in a NullPointerException.
 2014-12-03 13:46:46 -05:00
lmds1 df05f00b80 updated patient auditor to get patient name as a string from basehumannamedt 2014-12-03 13:21:23 -05:00
jamesagnew c294e1c064 Begin multi version work 2014-12-01 08:13:32 -05:00
lmds1 ed66ffebc9 added unit tests for auditing interceptor 2014-11-28 17:38:07 -05:00
lmds1 edc00091e8 merging null pointer check from v0.8-uhn-branch to master 2014-11-26 10:53:54 -05:00
lmds1 cc9f12bf31 added null check on resource mapping for conformance method bindings 2014-11-26 10:36:34 -05:00
jamesagnew 383d4929c8 Fix #57: Date/Time types should not throw exceptions for bad precision on setValue(String) but should for constructors 2014-11-25 09:14:11 +01:00
b.debeaubien 428af56c82 Fixed issue where empty narrative caused a StringIndexOutOfBoundsException 
Fixed encoding issue on XmlParserTest so it'll run in windows
 2014-11-21 12:19:18 -05:00
James Agnew 84c08b1684 Do not share interceptors between individual interface based client 
instances

Conflicts:
	src/changes/changes.xml
 2014-11-21 11:46:23 -05:00
James Agnew 51f2ce1e37 Do not share interceptors between individual interface based client 
instances
 2014-11-21 11:39:21 -05:00
James Agnew c0d125f288 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2014-11-20 16:41:42 -05:00
James Agnew 6e293a6623 More tutorial samples, as well as credit for #54 2014-11-20 16:29:10 -05:00
James Agnew 284625a1bc Merge pull request #54 from jjathman/master 
Fixes #51 - cache whether or not validation was successful when the Vali...
 2014-11-20 16:28:33 -05:00
lmds1 d757bc1f16 set version for all hapi projects to 0.8-uhn-branch 2014-11-20 14:48:33 -05:00
James Agnew 06a1e459d4 Returned resource objects from server methods should not be modified 
while converting to a bundle
 2014-11-20 14:42:24 -05:00
lmds1 57b34cd869 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 2014-11-19 15:48:20 -05:00
lmds1 bf65cb974b added more auditors for new resource types, updates existing auditors to include subject 2014-11-19 15:48:12 -05:00
Tahura Chaudhry c95af615f1 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 2014-11-19 14:22:35 -05:00
tahura 641e3cefd4 now adding Resources within contained to the Bundle 2014-11-19 14:19:39 -05:00
James Agnew 74b15e2295 Add a new date/time setter and update documentation 2014-11-19 11:29:33 -05:00
Joseph Athman fb4246577d fixes a test which fails if the local time zone was not EST as the output from the formatter would change the offset of the reproduced string value. 2014-11-18 22:19:50 -06:00
Joseph Athman 0cce1d21df Fixes #51 - cache whether or not validation was successful when the ValidationResult object is created so that mutations to the underlying OperationOutcome do not change the validation result success status. 2014-11-18 22:17:22 -06:00
James Agnew 7ca4bc30d2 Dont overwrite absolute IDs in the server 2014-11-18 14:29:57 -05:00
James Agnew 14a8f4f4cf JPA module now handles search params with | in them - More work on #52 2014-11-18 13:11:05 -05:00
James Agnew 93c34fdbbe Fix issue #52 - JPA module won't save resource types with empty path 
search params
 2014-11-17 16:58:34 -05:00
jamesagnew 23de3c53b7 Merge branch 'issue50' 
Conflicts:
	hapi-fhir-base/src/main/java/ca/uhn/fhir/model/primitive/BaseDateTimeDt.java
 2014-11-17 14:41:27 -05:00
jamesagnew 1b7586f7ed Fix #50 - Primitive datatypes now retain their textual values as well as the "parsed" values 2014-11-16 21:38:25 -05:00
James Agnew e2d59ef5ba Add unit test for BaseDateTimeDt 2014-11-14 14:36:26 -05:00
lmds1 08ffa55774 tidied up whitespace and imports 2014-11-13 18:40:59 -05:00
lmds1 66ddd25eb7 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 2014-11-12 19:18:14 -05:00
lmds1 14cf9dd536 cleanup of AuditingInterceptor docs 2014-11-12 19:17:09 -05:00
lmds1 7e224d3ca1 Fixed POST parameter processing for long input and includes, removed extra unused param from IParameter.translateClientArgumentIntoQueryArgument 2014-11-12 19:16:26 -05:00
lmds1 40d127b274 removed unused import 2014-11-12 18:09:25 -05:00
James Agnew 374d95ea76 Merge pull request #49 from wdebeau1/master 
Added @Destroy annotation, which allows ResourceProviders to do cleanup ...
 2014-11-11 14:05:50 -05:00
lmds1 039e5655a8 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 
Conflicts:
	hapi-tinder-plugin/src/main/resources/vm/resource.vm
	hapi-tinder-plugin/src/main/resources/vm/resource_dstu.vm
 2014-11-10 18:17:29 -05:00
lmds1 5f3a366ab0 updated IResourceAuditor interface 2014-11-10 18:09:11 -05:00
James Agnew 4dcfdc88fd Fix build issues 2014-11-10 18:08:08 -05:00
lmds1 025db56fe9 iresourceauditor is in hapi-fhir-base not dstu 2014-11-10 17:55:18 -05:00
b.debeaubien 21d058f86b Added @Destroy annotation, which allows ResourceProviders to do cleanup when the server shuts down; renamed "ResfulServer" tests to "RestfulServer" 2014-11-10 17:50:49 -05:00
James Agnew 479c09b174 Fix failure to parse child of type "any" for code values 2014-11-10 17:33:45 -05:00
James Agnew 030ad3934c DOcumentation updates 2014-11-10 10:59:48 -05:00
jamesagnew fcb9a80bbc DateRangeParam now correctly handles requests containing a single date 2014-11-08 12:17:42 -05:00
jamesagnew 450b270c00 Fix compile issues in previous merge 2014-11-08 11:18:04 -05:00
jamesagnew 66bb291e04 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 
Conflicts:
	examples/pom.xml.orig
	hapi-deployable-pom/pom.xml
	hapi-fhir-base/src/main/java/ca/uhn/fhir/model/base/resource/BaseOperationOutcome.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/RestfulServer.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/exceptions/BaseServerResponseException.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/exceptions/UnprocessableEntityException.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/interceptor/IServerInterceptor.java
	hapi-fhir-jpaserver-uhnfhirtest/.settings/org.eclipse.wst.common.component
	hapi-fhir-structures-dev/.gitignore
	hapi-fhir-structures-dstu/src/test/java/ca/uhn/fhir/context/CustomObservation.java
	hapi-tinder-plugin/src/main/java/ca/uhn/fhir/tinder/TinderStructuresMojo.java
	hapi-tinder-plugin/src/main/resources/vm/resource.vm
	hapi-tinder-plugin/src/main/resources/vm/resource_dstu.vm
	pom.xml
	restful-server-example/.settings/org.eclipse.wst.common.component
	restful-server-example/.settings/org.eclipse.wst.common.component.orig
	src/changes/changes.xml
	src/site/resources/svg/restful-server-interceptors.svg
	src/site/site.xml
 2014-11-08 10:58:35 -05:00
jamesagnew 5c9cf8ddf8 More merging cleanup 2014-11-08 10:38:25 -05:00
jamesagnew d1fb878c55 Merging 2014-11-08 10:36:27 -05:00
James Agnew d22a35788f Implement handleException on the server interceptor framework, as well 
as some site and documentation enhancements
 2014-11-07 14:26:59 -05:00
lmds1 f303e174fc Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 2014-11-04 17:32:00 -05:00
lmds1 b227d9ff99 changed iResource to return a String resourcename instead of an enum (to be used for auditing), moved audit classes from base to dstu so they can access dstu classes, updated templates to add new method to generated resources 2014-11-04 17:31:53 -05:00
James Agnew 4e769da4ca Give securityevent a common parent 2014-11-04 13:29:21 -05:00
James Agnew 1bd51f6118 Potential solution for #47 (bad test) 2014-11-03 18:48:32 -05:00
lmds1 f366cb52f1 merged changes from master 2014-11-03 17:18:33 -05:00
lmds1 ce3132ce57 no changes 2014-11-03 16:04:00 -05:00
b.debeaubien 4a4dd90f6e Added the ProvidesResources annotation and supporting classes, which allows server authors to specify resources that should be added to the initial resource list (and thus show up in the list of profiles returned from a search) 2014-11-03 09:04:16 -05:00
b.debeaubien 11894710f9 Updated docs in ResourceDef to indicate what id is used for (potentially it's also used for other things, though I didn't find any) 
Added a test that demonstrates using ResourceDef.id to set the id for a custom resource's profile
 2014-10-31 12:14:54 -04:00
James Agnew c7d4441d3b Merge branch 'master' of github.com:petromykhailysyn/hapi-fhir into petromykhailysyn-master 2014-10-30 13:59:12 -04:00
James Agnew e9ab9c8259 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 
Conflicts:
	hapi-fhir-structures-dstu/src/main/java/ca/uhn/fhir/model/dstu/FhirDstu1.java
 2014-10-30 13:58:33 -04:00
James Agnew 135ba9d9e6 Moving site generation into root project 2014-10-30 13:57:29 -04:00
b.debeaubien 374da3f3a0 Fix for https://github.com/jamesagnew/hapi-fhir/issues/42 
A few more eclipse exclusions for .gitignore
 2014-10-30 11:41:48 -04:00
b.debeaubien edc8614ba8 Merging master 2014-10-30 10:06:42 -04:00
James Agnew da6a5d5a24 Move BoundCodeableConceptDt back to where it originally was for DSTU1 
resources
 2014-10-29 16:08:07 -04:00
James Agnew 109bbb4a5d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2014-10-29 15:35:13 -04:00
James Agnew 094a617644 Merge branch 'versions' 
Conflicts:
	hapi-fhir-base/examples/pom.xml
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/exceptions/UnprocessableEntityException.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/validation/FhirValidator.java
	hapi-fhir-base/testmindeps/pom.xml
	hapi-fhir-jpaserver-uhnfhirtest/pom.xml
	hapi-fhir-testpage-overlay/pom.xml
	hapi-tinder-plugin/pom.xml
	hapi-tinder-test/pom.xml
	restful-server-example-test/pom.xml
	restful-server-example/.settings/org.eclipse.wst.common.component
	restful-server-example/pom.xml
 2014-10-29 15:34:59 -04:00
James Agnew 8f610d2c3a Add some tests 2014-10-29 09:04:44 -04:00
James Agnew c26602f0c8 Versions now builds completely! 2014-10-24 15:43:35 -04:00
jamesagnew 818177f70f Bunp to 0.7 for release 2014-10-23 08:12:58 -04:00
James Agnew 81ddb3f1d5 More versions work 2014-10-20 18:59:02 -04:00
lmds1 45a3fa8254 updated tinder to generate resources with a getResourceType method returning the ResourceTypeEnum, removed Test resource 2014-10-20 14:19:18 -04:00
James Agnew b07b8b9845 Start adding DEV structures 2014-10-17 18:08:37 -04:00
James Agnew 47edfb7b01 Almost have versions tests passing 2014-10-17 14:51:45 -04:00
James Agnew bb0b39627d Unit tests almost all passing 2014-10-16 17:19:27 -04:00
James Agnew 1d29b2b642 Still more versions work 2014-10-16 13:41:57 -04:00
James Agnew dbc07dcb50 More versions work 2014-10-16 11:46:25 -04:00
James Agnew abecee2766 Some work on supporting multiple versions 2014-10-02 09:54:52 -04:00
James Agnew 751face0a6 Argh. Fix to 0.7-SNAPSHOT, not 0.6-SNAPSHOT 2014-09-30 13:16:09 -04:00
James Agnew 1feb69b545 Revert to 0.6-SNAPSHOT version 2014-09-30 11:59:38 -04:00
t106uhn 686237f970 bump to 0.8-SNAPSHOT 2014-09-26 20:50:36 -04:00
James Agnew c214f7fe19 Fix #24 - Add a bunch of elements to the automatically generated 
conformance profiles to ensure that they validate against the HL7
schemas.
 2014-09-22 16:27:57 -04:00
James Agnew cdd4b137fb Bump to 0.7-SNAPSHOT 2014-09-11 16:57:45 -04:00
jamesagnew 13dd6d5e11 Complete 0.6 2014-09-08 07:41:44 -04:00
James Agnew c75c37d24d Rename SecurityEvent.Object to SecurityEvent.ObjectElement 2014-08-27 12:01:46 -04:00
James Agnew ef10560c76 Version bump to 0.6-SNAPSHOT 2014-07-30 11:58:06 -04:00
jamesagnew 67fb593146 Finalize 0.5 2014-07-29 22:26:19 -04:00
James Agnew 41f160ed67 Documentation updates and bump to 0.5-SNAPSHOT 2014-07-15 18:36:13 -04:00
jamesagnew 568972b098 Release 0.4 2014-07-13 21:59:41 -04:00
jamesagnew ba09da38b6 Start adding paging support 2014-06-23 09:04:48 -04:00
jamesagnew 96986f8829 Lots of cleanup and try to speed up transacitons in JPA 2014-06-12 11:42:28 -04:00
jamesagnew bb86724e12 Allow contained resources to parse and encode correctly 2014-06-03 16:52:21 -04:00
jamesagnew f52ed02fa4 Get all of the tests passing again 2014-05-20 18:28:13 -04:00
jamesagnew a269d257d3 Bump 0.3 and get all tests passing 2014-05-11 21:46:36 -04:00
jamesagnew 9f302937d9 Committing all fixes and changes from Connectathon - Lots of minor fixes, and a DB module 2014-05-05 05:57:43 -07:00
jamesagnew 6877c0628e Add validate method 2014-04-25 08:23:58 -04:00
jamesagnew 23a8b12b5e Removing cruft files 2014-04-24 07:32:10 -04:00
jamesagnew b15462ddca Merge branch 'master' of ssh://git.code.sf.net/p/hl7api/fhircode 
Conflicts:
	hapi-fhir-base/pom.xml
	hapi-fhir-structures-dstu/pom.xml
	hapi-tinder-plugin/pom.xml
	hapi-tinder-test/pom.xml
	pom.xml
 2014-04-24 07:31:12 -04:00
jamesagnew ab3173f840 add assembly 2014-04-24 07:24:27 -04:00
jamesagnew 9ab7f8facc Fix unit tests and add changelog 2014-04-23 15:24:31 -04:00
jamesagnew 69461ef10e Fixing unit tests 2014-04-03 14:30:49 -04:00
jamesagnew eda3995a72 More resources added 2014-04-03 07:45:07 -04:00
jamesagnew 7c64466a51 More resource generation 2014-04-02 18:42:16 -04:00
jamesagnew ad189d66e2 Starting workon post methods 2014-03-27 08:51:02 -04:00
jamesagnew fb23e82ee9 Adding AdverseReaction 2014-03-25 13:42:38 -04:00
jamesagnew b55a4e140e Lots of bugfixes, and narrative generator is started 2014-03-24 08:32:28 -04:00
jamesagnew 5088850e6b More work on JSON parser, and contained resources 2014-03-16 15:09:30 -04:00
jamesagnew f0214399ca Lots of fixes and docs to tinder 2014-03-13 17:33:12 -04:00
jamesagnew 8b6f00bb58 Workingon conformance operation for client 2014-03-12 09:03:17 -04:00
jamesagnew 3d281217da Services working now 2014-03-04 18:25:52 -05:00
jamesagnew 5828f49029 Server starting to work 2014-03-04 16:41:18 -05:00