Commit Graph

3504 Commits

Author SHA1 Message Date
markiantorno 6ba8b38fc5 Release: v6.3.11
## Validator Changes

* Find value sets on tx server if not tx.fhir.org
* Do not send Content-Type header with GET requests for tx servers
* Fix npe validating code system
* Support discriminator by position
* Don't check type characteristics for unknown types

## WHO I18n Project

* Fix typos in phrases, and fix up handling of apostrophes in messages without parameters
* Test and fix for single quote escapes in I18n
* Create and test transifex configuration

## Rendering Changes

* Fix contact rendering to work properly
* Fix issue resolving contained resource rendering DiagnosticReports etc
* Handle case where Contact.value has extensions instead of a string value
* Render Parameterised types
* Fix bug with LOINC Code row showing wrongly in Profile Details view
* Partial implementation of type parameters
* Fixed rendering of actor-specific obligations, added elementIds to obligation narrative rendering
* Corrected ObligationsRenderer to handle multiple actors and multiple codes.  Also got obligations with elements to render properly (which means knowing whether you're on a table page or definitions page, what tab you're on, and whether the element for the obligation is in-scope for that tab (so you know whether to hyperlink or not).  Had to make links on the tables point to definitions because table anchors are not unique.

## Other code changes

* split out Base.canHavePrimitiveValue() from Base.hasPrimitiveValue()
* Refactor how observation profiles are registered in order to generalise management of extra profiles
  * Use validation policy to implement Observation profile rules
  * Rework validation policy management in standalone validator
* Try deploying javadoc with SNAPSHOT
* Add utility to unpack the spec.internals file
* v2 in FHIR tests
* Fix bug loading language pack NPMs
***NO_CI***
2024-06-07 02:33:16 +00:00
dotasek 93037baa9b Go back to SNAPSHOT
***NO_CI***
2024-06-06 21:58:57 -04:00
markiantorno d36d030076 Release: v6.3.11
## Validator Changes

* Find value sets on tx server if not tx.fhir.org
* Do not send Content-Type header with GET requests for tx servers
* Fix npe validating code system
* Support discriminator by position
* Don't check type characteristics for unknown types

## WHO I18n Project

* Fix typos in phrases, and fix up handling of apostrophes in messages without parameters
* Test and fix for single quote escapes in I18n
* Create and test transifex configuration

## Rendering Changes

* Fix contact rendering to work properly
* Fix issue resolving contained resource rendering DiagnosticReports etc
* Handle case where Contact.value has extensions instead of a string value
* Render Parameterised types
* Fix bug with LOINC Code row showing wrongly in Profile Details view
* Partial implementation of type parameters
* Fixed rendering of actor-specific obligations, added elementIds to obligation narrative rendering
* Corrected ObligationsRenderer to handle multiple actors and multiple codes.  Also got obligations with elements to render properly (which means knowing whether you're on a table page or definitions page, what tab you're on, and whether the element for the obligation is in-scope for that tab (so you know whether to hyperlink or not).  Had to make links on the tables point to definitions because table anchors are not unique.

## Other code changes

* split out Base.canHavePrimitiveValue() from Base.hasPrimitiveValue()
* Refactor how observation profiles are registered in order to generalise management of extra profiles
  * Use validation policy to implement Observation profile rules
  * Rework validation policy management in standalone validator
* Try deploying javadoc with SNAPSHOT
* Add utility to unpack the spec.internals file
* v2 in FHIR tests
* Fix bug loading language pack NPMs
***NO_CI***
2024-06-06 22:46:44 +00:00
Lloyd McKenzie ca97ce2aaa Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into FixObligationRendering 2024-06-06 09:05:44 -06:00
Grahame Grieve 765b4da292 find value sets on tx server if not tx.fhir.org 2024-06-06 19:41:18 +10:00
Grahame Grieve f4cc60c0e6 split out canHavePrimitiveValue() and hasPrimitiveValue() 2024-06-06 09:09:58 +10:00
Vassil Peytchev 36f7236aad First part fixes to CP rendering 2024-06-04 12:33:44 -05:00
Vassil Peytchev 0959c14c2b merge master 2024-06-03 08:22:44 -05:00
Vassil Peytchev 974ce280aa adding system-level operations 2024-06-03 08:20:16 -05:00
Grahame Grieve 95ec2b00a4 add java doc 2024-06-02 21:18:58 +10:00
Grahame Grieve c4585c995f proposed fix for hasPrimitiveValue() 2024-06-02 21:11:21 +10:00
Grahame Grieve 1e940dc489 fix contact rendering to work properly 2024-06-01 23:43:28 +10:00
Grahame Grieve 7512347c40 fix issue resolving contained resource 2024-06-01 23:39:49 +10:00
Grahame Grieve 674f834f8d Handle case where Contact.value has extensions instead of a string value 2024-06-01 22:57:13 +10:00
Grahame Grieve e51534030e Render Parameterised types, and fix bug with LOINC Code row showing wrongly in Profile Details view 2024-06-01 22:56:42 +10:00
Grahame Grieve 398b46e32d Do not send Content-Type header with GET requests 2024-06-01 22:55:35 +10:00
Grahame Grieve 2f38cb544c Refactor how observation profiles are registered in order to generalise management of extra profiles 2024-06-01 22:54:17 +10:00
Grahame Grieve 04e95f4e05 Partial implementation of type parameters 2024-06-01 22:51:55 +10:00
Grahame Grieve df711c0762 try again 2024-05-31 09:59:00 +10:00
Grahame Grieve 3dfbba0ec9 proposed control over vital signs check 2024-05-31 06:43:24 +10:00
Grahame Grieve 80159656c0 more language updates 2024-05-30 17:07:05 +10:00
Lloyd McKenzie f808aaf558 Fixed rendering of actor-specific obligations, added elementIds to obligation narrative rendering 2024-05-29 12:09:00 -06:00
Grahame Grieve 1087016941 fix npe rendering code system 2024-05-27 23:55:22 +10:00
Grahame Grieve d279468008 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-27 23:00:42 +10:00
Grahame Grieve b766cffdb1 v2 tests, support discriminator by position, and don't check type characteristics for unknown types 2024-05-26 07:56:16 -05:00
Lloyd McKenzie a390c9a128 Corrected ObligationsRenderer to handle multiple actors and multiple codes. Also got obligations with elements to render properly (which means knowing whether you're on a table page or definitions page, what tab you're on, and whether the element for the obligation is in-scope for that tab (so you know whether to hyperlink or not). Had to make links on the tables point to definitions because table anchors are not unique. 2024-05-26 06:37:12 -05:00
markiantorno a32e28e4e3 Updating version to: 6.3.11-SNAPSHOT and incrementing test cases dependency. 2024-05-25 23:37:56 +00:00
markiantorno d8781b8b76 Release: v6.3.10
## Validator Changes

* Fix issue validating codes with + in them
* Fix (well, hack) R4 vital signs issue with component units

## WHO I18n Project

* QA on i18n constants - remove spurious entries, add anything missing
* Remove test case for i18n coverage
* Generate properties translation files without blank entries
* Add transifex configuration
* Fix up .po file generation so that POEdit is supported, and remove duplicate constants (#1592)
* Most strings translated to Dutch, unchecked.
* Add utility to infer locale from region code

## Other code changes

* Remove Accept-Charset header
* Fix typos around CODESYSTEM_CONTENT_COMPLETE
***NO_CI***
2024-05-25 22:53:24 +00:00
Grahame Grieve 56b0ad11f3 Fix R4 vital signs issue with component units 2024-05-25 15:11:27 -05:00
Grahame Grieve 4037e5dc4f QA on i18n constants - remove spurious entries, add anything missing 2024-05-25 08:05:25 -05:00
Grahame Grieve 853b4fd9ca stable baseline 2024-05-25 04:25:47 -05:00
Grahame Grieve 5133a88060 Remove Accept-Charset header 2024-05-25 03:44:20 -05:00
Grahame Grieve de544a752e Fix up .po file generation so that POEdit is supported, and remove duplicate constants (#1592) 2024-05-24 19:39:37 -05:00
markiantorno 0d0687f1f1 Updating version to: 6.3.10-SNAPSHOT and incrementing test cases dependency. 2024-05-22 05:52:30 +00:00
markiantorno c47f248fa4 Release: v6.3.9
## Validator Changes

* remove "LOINC 2711-0 Oxygen saturation in Venous blood" from the list in the validator that checks whether an observation is a vital sign

## WHO I18n Project

* fix value set summary line display
* update the source of truth translation files

## Other code changes

* Handle more than one expectation extensions in CapabilityStatement
* Fix NPEs in Liquid renderer
***NO_CI***
2024-05-22 05:02:20 +00:00
Vassil Peytchev ef984e26a9
Merge branch 'hapifhir:master' into master 2024-05-21 18:36:09 -05:00
Grahame Grieve d9c1c74924 Fix NPEs in Liquid renderer 2024-05-21 16:55:17 -05:00
Vassil Peytchev f51e055f4a Handle more than one expectation extensions 2024-05-21 15:45:16 -05:00
Grahame Grieve ad2544fc2a fix value set summary line display 2024-05-21 10:09:18 -05:00
Grahame Grieve 042db67fee Compile fix 2024-05-20 16:57:34 -05:00
markiantorno 1f6aaa1db3 Updating version to: 6.3.9-SNAPSHOT and incrementing test cases dependency. 2024-05-20 13:16:27 +00:00
markiantorno 5165942802 Release: v6.3.8
## Validator Changes

* Fix bug processing extension with explicit type slicing
* Fix wrong language code from java locale
* Don't accidently hit other terminology servers for code systems handled natively by tx.fhir.org
* Validate Additional Bindings (provisional - usage context is todo)
* Improved system specific checking of value set filters - particularly LOINC and SNOMED CT, and update LOINC validation to the latest understanding of LOINC filters

## WHO I18n Project

* Add importing translations to native resources
* Finish Migrating text phrases to i18n framework
* Fix bugs with loading translations (#1592)

## Security

* Move all network access to go through ManagedWebAccess
* More security documentation

## Other code changes

* Put jurisdiction in npm package.json
* Add testing ontoserver to test suite
* Fix NPE testing Ontoserver
* fix tx tester calling run ok when a filter is applied and tests fail
* Fix name of preferred when rendering AdditionalBindings
* Add AdditionalBinding version conversion in profiles
* Fix SNOWMED spelling
* Fix rendering of multiple imports in value sets
***NO_CI***
2024-05-20 12:30:29 +00:00
Grahame Grieve 75a9d13050 Add importing translations to native resources 2024-05-20 05:17:03 -05:00
Grahame Grieve 468660bc17 Fix bugs with loading translations (#1592) 2024-05-20 04:38:17 -05:00
Grahame Grieve a86fe5a2d2 FIx up issues with calling translation on the wrong set of properties (#1592) 2024-05-20 04:38:17 -05:00
Grahame Grieve 2d226fdf51 Fix wrong language code from java locale 2024-05-19 23:29:26 -05:00
Grahame Grieve 0cc46e5a44 Fix bug processing extension with explicit type slicing 2024-05-19 22:45:17 -05:00
Grahame Grieve 21e7e70a99 put jurisdiction in npm package.json 2024-05-19 09:36:20 -05:00
Grahame Grieve 5662ec131f WHO i18n work (#1592) 2024-05-19 09:36:05 -05:00
Grahame Grieve de79e47de6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-19 06:11:17 -05:00
Grahame Grieve b3a969e3ce Don't accidently hit other terminology servers for code systems handled natively by tx.fhir.org 2024-05-18 07:36:51 -05:00
Grahame Grieve 7183397f92
Merge pull request #1622 from hapifhir/2024-05-gg-ManagedWebAccess
introduce ManagedWebAccess
2024-05-18 21:46:03 +10:00
Grahame Grieve 6ba9a11c51 Validate Additional Bindings (provisional - usage context is todo) 2024-05-18 03:24:54 -05:00
Grahame Grieve bd24ebace7 fix name of preferred when rendering AdditionalBindings 2024-05-18 03:22:46 -05:00
Grahame Grieve 4911f4fef8 updates for ManagedWebAccess 2024-05-18 14:58:33 +10:00
MattCordell 7603845721 Fix SNOWMED spellings #1621 2024-05-17 12:15:43 +10:00
Grahame Grieve a510a6d1aa introduce ManagedWebAccess 2024-05-16 13:34:50 +10:00
Grahame Grieve 1e3bc60d6e Fix up translation issues 2024-05-12 23:24:20 +10:00
Grahame Grieve 3f236eb880 fix rendering of multiple imports in value sets 2024-05-12 22:27:54 +10:00
markiantorno 248b8b1ac8 Updating version to: 6.3.8-SNAPSHOT and incrementing test cases dependency. 2024-05-10 05:02:38 +00:00
markiantorno d81fc5d82d Release: v6.3.7
## Validator Changes

* Fix bug where some #refs are not resolved to the root of the resource in FHIRPath slicing evaluation
* Fix bug passing wrong type to tx server when using inferSystem
* Fix bug processing version of CodeSystem.supplements incorrectly
* Don't process wrong parent when processing snapshot of element with profiled type that is not reprofiled
* Fix typo in OID message
* Fix handling value set exclude filters
* Allow code system declared properties to be self-referential

## I18n changes

* More comprehensive internationalization phrase coverage reporting on project page
* Move many rendering phrases into i18n framework

## Rendering Changes

* Fix issue with unknown element rendering fixed value for Attachment
* Fix bug calculating value set expansion size for multiple imports
* Fix bug using wrong message for value sets that are too costly to expand
* Fix extension urls not being linked in tree view
* rendering improvements and remove static use of describeSystem
* Fix NPE rendering profile comparisons
* Fix bug where slicing and grouping gets mixed up rendering profile tree

## Other code changes

* Wrap general exception for IWorkerContext (Catch missed exception from HAPI)
* Shim interfaces and classes to support clinical reasoning project updates.
* Fix duplicate txServer getters and setters
* Use extension class on Exception to force try-catch blocks on checkCodeOnServer calls (#1609)
* rework OID handling for better consistency
* handle time outs doing vsac import (starlink obstructions)
***NO_CI***
2024-05-10 04:18:38 +00:00
Grahame Grieve 5259bf9847 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-10 08:49:11 +10:00
Grahame Grieve e57ef59ee9 Fix issue with unknown element rendering fixed value for Attachment 2024-05-10 08:09:03 +10:00
Grahame Grieve ba3dc45863 Fix bug where some #refs are not resolved to the root of the resource in FHIRPath slicing evaluation 2024-05-09 19:16:33 +10:00
Grahame Grieve 7be94402a5 Fix bug calculating value set expansion size for multiple imports 2024-05-09 19:16:00 +10:00
Grahame Grieve 256c494d91 Fix bug using wrong message for value sets that are too costly to expand 2024-05-09 19:15:40 +10:00
Grahame Grieve d63e66fa0b fix bug passing wrong type to tx server when using inferSystem 2024-05-09 19:15:10 +10:00
dotasek e05660a76c Merge remote-tracking branch 'origin/master' into do-20240506-cr-shims 2024-05-08 09:29:03 -04:00
Grahame Grieve c90fa8c023 fix extension urls not being linked in tree view 2024-05-08 12:06:29 +10:00
Grahame Grieve a87dcd1d93 fix up i18n for change notes 2024-05-08 12:05:54 +10:00
Grahame Grieve e129e6879d don't process wrong parent when processing snapshot of element with profiled type that is not reprofiled 2024-05-08 12:05:38 +10:00
dotasek.dev 3317d8bd86 Add shim interfaces and classes for CR project compatibility 2024-05-06 17:03:08 -04:00
Grahame Grieve c24fde0bb6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-05 18:17:33 +10:00
Grahame Grieve f79fdb44ec rendering improvements and remove static use of describeSystem 2024-05-05 18:12:57 +10:00
Grahame Grieve fec36d70b3 fix handling value set exclude filters 2024-04-27 21:46:31 +10:00
Grahame Grieve b4b93de9b0 fix NPE rendering profile comparisons 2024-04-27 21:46:16 +10:00
Grahame Grieve d8741f72e6 Fix bug where slicing and grouping gets mixed up rendering profile tree 2024-04-27 21:46:03 +10:00
Grahame Grieve 316161e3a7 i18n for rendering phrases (step 1) #1592 2024-04-25 22:01:04 +10:00
Grahame Grieve 1d913459fe rework OID handling for better consistency 2024-04-25 21:59:44 +10:00
markiantorno 9ce2c57b8b Updating version to: 6.3.7-SNAPSHOT and incrementing test cases dependency. 2024-04-23 08:51:21 +00:00
markiantorno 46bdec9054 Release: v6.3.6
## Validator Changes

* fix NPE loading resources
* Don't enforce ids on elements when processing CDA
* Send supplements to tx server
* fix bug processing code bindings when value sets are complex (multiple filters)
* fix spelling of heirarchy
* Look up CodeSystem from terminology server
* Don't use tx-registry when manual terminology server is set

## Other code changes

* More work on WHO language support ($1592)
* allow validation message to have count
* render versions in profile links when necessary
* rework OID handling for better OID -> CodeSystem resolution
* fix up vsac importer for changes to client
* don't send xhtml for tx operations
* FHIRPath: Backport the defineVariable code to the R4 and R4B fhirpath implementations
* FHIRPath: Remove the alias/aliasAs custom functions (use standard defineVariable now)
* Bump lombok (#1603)
***NO_CI***
2024-04-23 08:03:57 +00:00
Grahame Grieve befac845ae fix typo 2024-04-23 08:39:37 +10:00
Grahame Grieve 60bf358bfa Look up CodeSystem from terminology server + don't use tx-registry when manual terminology server is set 2024-04-23 08:34:25 +10:00
Grahame Grieve 2625952ce2 more work on WHO language support ($1592) 2024-04-22 11:17:45 +10:00
Grahame Grieve 6bcea37785 fix NPE loading resources 2024-04-22 11:17:06 +10:00
Grahame Grieve 5134aa187c Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-04-21 21:57:05 +10:00
Grahame Grieve 8cca22aef3 fix bug processing code bindings when value sets are complex (multiple filters) 2024-04-20 23:36:01 +10:00
Grahame Grieve 56fdbf500f render versions in profile links when necessary 2024-04-20 23:35:42 +10:00
Grahame Grieve 9dfa57c2d5 rework OID handling for better OID -> CodeSystem resolution 2024-04-20 23:35:27 +10:00
Grahame Grieve 213363fc1e Send supplements to tx server 2024-04-20 23:35:01 +10:00
Grahame Grieve 81cb12d0ed don't send xhtml for tx operations 2024-04-20 23:33:43 +10:00
Grahame Grieve 3fb9bc20f4 fix spelling of heirarchy 2024-04-20 23:32:52 +10:00
Brian Postlethwaite d56404afd6 Backport the defineVariable code to the R4 and R4B fhirpath implementations 2024-04-17 13:09:12 +10:00
Brian Postlethwaite 59bd0d012c Remove the alias/aliasAs custom functions from R5 (use standard defineVariable now) 2024-04-17 09:56:33 +10:00
markiantorno ed18ec2cc6 Updating version to: 6.3.6-SNAPSHOT and incrementing test cases dependency. 2024-04-16 22:47:50 +00:00
markiantorno ccf66ece0b Release: v6.3.5
## Validator Changes

* Fix up path management in the validator for resolving references in Bundles
* Add support for defineVariable in FHIRPath
* Fix problem with CDA element having multiple types
* Fix problem with 'is' not working in FHIRPath for CDA types
* Fix issue processing CDA generic type names
* Fix for NPE processing tx server response
* Add support for code system supplements when communicating with tx server

## Other code changes

* OSGI: make sure JUnit 4 and 5 dependencies are optional (#1596) (Also removed duplicate managed versions of JUnit 4.13.2 and mockwebserver 4.11.0)
* Render CapabilityStatement.imports (and instantiates)
* Terminology Service Tests - minor improvements for running in HAPI, add $lookup & $translate support, create R4 clone
* Add support for $translate to terminology client
* More i18n work in rendering context (WHO project)
* Add isServerSide for seeing if code systems are only supported on the server
* Fix R4B loading issue that lead to wrong web paths for R4B resources
* Fix problems rendering Binary files in IGs
* Add support for rendering logical URIs
* Remove path.toFile()

## Security

* Finish moving all local file access to go through ManagedFileAccess

## WHO Internationalization work

* More work on date rendering
***NO_CI***
2024-04-16 22:01:50 +00:00
dotasek bab36025db
Bump nimbus-jose-jwt (#1599) 2024-04-16 11:29:28 -04:00
Grahame Grieve ca783eb036
Merge pull request #1597 from brianpos/BP-defineVariable
Implement the new fhirpath `defineVariable` function
2024-04-16 22:04:40 +10:00
Grahame Grieve f9a11d97f7 more removing Path.toFile() 2024-04-16 19:37:42 +10:00
Grahame Grieve 99f40d18b5 Start removing path.toFile() 2024-04-16 18:17:42 +10:00
Grahame Grieve 4155a9be6a Add support for code system supplements when communicating with tx server 2024-04-15 22:42:05 +10:00
Grahame Grieve 1f7f57bade Add support for $translate to terminology client 2024-04-15 22:41:45 +10:00
Brian Postlethwaite 49809ec6c2 The scoping for the `aliasAs` function has different needs to everything else, so has minor workaround. 2024-04-15 10:38:25 +10:00
Grahame Grieve 16c5317ccb Add support for rendering logical URIs 2024-04-12 22:11:55 +10:00
Grahame Grieve eb553df2df fix problems rendering Binary files in IGs 2024-04-12 22:11:14 +10:00
Grahame Grieve 3d62e098c2 Fix problem with 'is' not working in FHIRPath for CDA types 2024-04-12 22:10:49 +10:00
Grahame Grieve e89f44725f fix problem with CDA element having multiple types 2024-04-12 22:10:18 +10:00
Brian Postlethwaite 33d9304700 Missed the total and index copying to the child context. 2024-04-12 16:06:03 +10:00
Brian Postlethwaite af6759dd4c Add support for a test to skip the static check (only case has been a declareVariable that uses a dynamically calculated name) 2024-04-12 14:13:54 +10:00
Brian Postlethwaite f54ae79949 set the context to isolate parameters to functions/operations from sharing the same defineVariables context 2024-04-12 14:13:53 +10:00
Brian Postlethwaite d65f2cc47d Static check the parameters for the defineVariable function. 2024-04-12 14:13:53 +10:00
Brian Postlethwaite 5d612c78b2 Don't permit variables to be over-written. 2024-04-12 14:13:53 +10:00
Brian Postlethwaite 7b7af6087e base components of implementing the defineVariable fhirpath function 2024-04-12 14:13:53 +10:00
Grahame Grieve 4ceac5012b Look up support in Tx Tests 2024-04-11 08:29:34 +10:00
Grahame Grieve 8ce99140aa More i18n work (#1592) 2024-04-10 08:18:58 +10:00
Grahame Grieve 0038e3a57b Fix up path management in the validator for resolving references in Bundles 2024-04-10 08:18:06 +10:00
Grahame Grieve a939e14db9 Add isServerSide for seeing if code systems are only supported on the server 2024-04-10 08:16:55 +10:00
Grahame Grieve a111989bb4 i18n work in rendering context (WIP) (#1592) 2024-04-09 05:20:41 +10:00
Grahame Grieve 2ce5bbd0d8 #873 render CapabilityStatement.imports (and instantiates) 2024-04-04 22:16:26 +11:00
markiantorno 1f3d2838d9 Updating version to: 6.3.5-SNAPSHOT and incrementing test cases dependency. 2024-04-04 01:47:30 +00:00
markiantorno 45e8d86478 Release: v6.3.4
## Validator Changes

* Validate fixed/pattern values are not changed in derived profiles
* Fix NPE validating some profiles
* FHIRPath validation: consider sub-extensions when checking extension($) use
* Fix validation of concept maps containing SCT
* Preserve message id from terminology service so editors can use it to remove hints and warnings

## Other code changes

* Fix ConceptMap.group.target conversion from R3 to R5
* Fix NPE in list renderer
* fix bug showing 'required' instead of 'current' rendering additional bindings
* Fix bad references generating narratives in bundles
* Fix bug showing extension binding twice
* Various improvements to structure map validation to support cross-version mappings
* Add rendering for UsageContext and ContactDetail
* Fix broken link in xver IG for R2
* Fix bug rendering resources in Parameters resource
* Not-pretty xhtml gets line breaks before block tags to keep line length down (work around a jekyll issue)
* Improved ConceptMap rendering for cross-version IG
* Handle xhtml:div type for old FHIR version
* FML: strip '-' from rules names when parsing
* Update FML parsers to accept R5 metadata in R4 FML format
* Break out helper classes for Terminology Service Tester

## Security

* Add start of security notes
* Start moving file access to all go through ManagedFileAccess

## WHO Internationalization work:

* Add library to parse IETF Language definitions
* Move message translations to .po files as the master source & write convertor
* Much work making rendering i18n-able
* i18n for Patient renderer
* Refactor language handling in R5 renderers
***NO_CI***
2024-04-04 00:55:36 +00:00
Grahame Grieve f9a3501857 update to bundle rendering to fix broken links 2024-04-04 06:50:00 +11:00
Grahame Grieve 0d57115ede preserve message id from terminology service so editors can use it in suppressed-messages.txt 2024-04-03 20:13:34 +11:00
Grahame Grieve eb7d66685e improved ConceptMap rendering for cross-version IG 2024-04-03 20:12:47 +11:00
Grahame Grieve 1c98b06189 handle xhtml:div type for old FHIR version 2024-04-03 20:12:28 +11:00
Grahame Grieve f654ae1d58 FHIRPath engine: consider sub-extensions when checking extension($) use 2024-04-03 20:12:14 +11:00
Grahame Grieve a8b40a3946 FML: strip '-' from rules names when parsing 2024-04-03 20:11:40 +11:00
Grahame Grieve 2c6f1b6a59 start moving file access to all go through ManagedFileAccess 2024-04-03 20:11:16 +11:00
Grahame Grieve d4d356731e update PO generator for plurals 2024-03-29 20:38:54 +11:00
Grahame Grieve 8d86abe0c1 more i18n work for rendering 2024-03-29 20:38:28 +11:00
Grahame Grieve c8c3e330b6 fix bad references generating narratives in bundles 2024-03-29 20:38:14 +11:00
Grahame Grieve 89b885f191 i18n for Patient renderer 2024-03-29 20:37:36 +11:00
Grahame Grieve 2373ab7a22 add rendering for UsageContext and ContactDetail 2024-03-29 20:37:26 +11:00
Grahame Grieve 07e291b511 fix bug showing 'required' instead of 'current' rendering additional bindings 2024-03-29 20:36:56 +11:00
Grahame Grieve e2be137e5d fix bug showing extension binding twice 2024-03-29 20:36:38 +11:00
Grahame Grieve 6ca39e14db fix broken link in xver IG for R2 2024-03-27 21:14:26 +11:00
Grahame Grieve c9490d88d1 update FML parsers to accept R5 metadata in R4 FML format 2024-03-27 21:14:00 +11:00
Grahame Grieve a95b867054 more rendering i18n work 2024-03-26 06:27:25 +11:00
Grahame Grieve 1842dfee41 test fix 2024-03-25 23:49:47 +11:00
Grahame Grieve c53730b038 fix tests 2024-03-25 21:44:53 +11:00
Grahame Grieve d49488c617 fix broken tests 2024-03-25 21:11:17 +11:00
Grahame Grieve 9c74556770 more rendering work 2024-03-25 16:57:37 +11:00
Grahame Grieve 459f04a490 update date rendering 2024-03-25 15:58:40 +11:00
Grahame Grieve a4055877c4 more work on multi-language rendering, and add test id to error message on comparison 2024-03-25 10:06:00 +11:00
Grahame Grieve c633eafef6 more i18n refactoring 2024-03-24 18:05:06 +11:00
Grahame Grieve 0e36d2a3c6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-03-24 17:48:40 +11:00
Grahame Grieve c7dc4b149e fix NPE in list renderer 2024-03-24 17:48:36 +11:00
Grahame Grieve 4a2e2087bb bug fixes 2024-03-23 20:09:17 +11:00
Grahame Grieve e43fb83693 more refactoring rendering for i18n 2024-03-23 18:29:14 +11:00
Grahame Grieve 02b6e80b6d refactor language handling in R5 renderers 2024-03-22 22:49:31 +11:00
Grahame Grieve 53f484d11c fix bug rendering resources in Parameters resource 2024-03-21 20:12:54 +11:00
Grahame Grieve 975b45da36 more work on translations 2024-03-21 20:12:42 +11:00
markiantorno 0cebf9af9f Updating version to: 6.3.4-SNAPSHOT and incrementing test cases dependency. 2024-03-20 13:31:17 +00:00
markiantorno ec51399045 Release: v6.3.3
## Validator Changes

* Fix grammar in validation messages
* Fix NPE in validator for SIDs
* Duplicate designations in a code system is a warning, not an error
* Fix value set validation to validate codes in example code systems

## Other code changes

* Improved multi-language support for IG development (LanguageUtils)
***NO_CI***
2024-03-20 12:38:29 +00:00
Grahame Grieve 9a66c1968e more work on language utilities 2024-03-20 22:44:13 +11:00
Grahame Grieve 8f2f414c78 Fix value set validation to validate codes in example code systems 2024-03-20 20:59:41 +11:00
Grahame Grieve 99ea673b91 Improved language support for IG development 2024-03-20 20:39:07 +11:00
markiantorno b2e3c261e4 Updating version to: 6.3.3-SNAPSHOT and incrementing test cases dependency. 2024-03-18 15:09:50 +00:00
markiantorno 5b5a0a2cdf Release: v6.3.2
## Validator Changes

* CodeSystem property validation improvements
* More valueset validation improvements after real world testing
* Fix processing of NotSelectable filters using in | not-in
* Fix wrong collection type checking FHIRPath subsetOf parameter type

## Other code changes

* Fix rendering of contained resources in Kindling
* Put jurisdiction in NPM package file
* Rendering improvements for xver IG
* More xver support for concept maps
* Fix NPE in ContextUtilities (kindling)
* Add OID Assigner utility
***NO_CI***
2024-03-18 14:24:12 +00:00
Grahame Grieve 30545d31c1 CodeSystem property validation improvements 2024-03-18 18:09:56 +11:00
Grahame Grieve 413c047b56 more fixing rendering 2024-03-18 14:35:59 +11:00
Grahame Grieve c221488463 fix rendering of contained resources in Kindling 2024-03-18 14:35:46 +11:00
Grahame Grieve 8897f956bf put jurisdiction in NPM package file 2024-03-14 16:48:04 +11:00
Grahame Grieve e0d17ceb97 Fix processing of NotSelectable filters using in | not-in 2024-03-14 16:47:45 +11:00
Grahame Grieve 93c98b551a rendering improvements for xver IG 2024-03-14 16:47:23 +11:00
Grahame Grieve 3c39cafbcb more xver support for concept maps 2024-03-14 16:46:57 +11:00
Grahame Grieve 564a71fe1c fix wrong collection type checking FHIRPath subsetOf parameter type 2024-03-14 16:46:39 +11:00
Grahame Grieve fc8be53260 fix NPE in kindling 2024-03-14 16:46:03 +11:00
markiantorno da3bb9e353 Updating version to: 6.3.2-SNAPSHOT and incrementing test cases dependency. 2024-03-10 21:41:17 +00:00
markiantorno 072be957d4 Release: v6.3.1
## Validator Changes

* Add validation for CodeSystem Properties and ValueSet filters
* More validation for Code Systems: contained code systems, supplement cross checks
* Add more validation around ValueSet.compose.include.system - must be a proper URL, and not a direct reference to a supplement
* HL7: Don't require HL7 publishing status on contained resources
* Don't walk into nested bundles when validating links in bundles
* fix up implementation of notSelectable in value set filters
* Add check for multiple version matches for a versionless canonical reference

## Other code changes

* Fix narrative generator generating duplicate anchors (prefix 'hc')
* exclude .DS_Store from generated zip files
* Add cross-version support extension
* Add ConceptMap utilities in support of cross-version module
***NO_CI***
2024-03-10 20:52:29 +00:00
Grahame Grieve 9e8a010c13 ValueSetValidation improvements 2024-03-11 00:19:16 +11:00
Grahame Grieve a94b41add8 fix up implementation of notSelectable in value set filters 2024-03-08 22:31:53 +11:00
Grahame Grieve 045718d582 Fix narrative generator generating duplicate anchors (prefix 'hc') 2024-03-08 22:31:25 +11:00
Grahame Grieve 13dcebb3e4 add check for multiple version matches for a versionless canonical reference 2024-03-08 22:29:51 +11:00
Grahame Grieve 209d38413e cross-version support extension 2024-03-07 13:49:15 +11:00
Grahame Grieve 0076a2206d ConceptMap utilities 2024-03-05 20:10:13 +11:00
Grahame Grieve a3fb1457a0 More improvements to ConceptMap Infrastructure 2024-03-01 16:40:41 +11:00
markiantorno 48023c0ba4 Updating version to: 6.3.1-SNAPSHOT and incrementing test cases dependency. 2024-02-28 05:56:31 +00:00
markiantorno b44c34c7e2 Release: v6.3.0
## Validator Changes

* Fix significant bug where validator gets internal child lists incorrect and doesn't do complete validation when switching between validating profiles and resources directly
* Performance improvement for validator parsing - thanks Brian Postlethwaite
* Fix Crash on slicing a sliced element #862
* Fix ig loading from direct URL (#1559)
* Fix bug copying constraints into Bundle.entry.resource profiles
* Fix bug loading R5 extensions with imported value sets
* Replace dom-3 with custom java code, and check xhtml references to contained content
* Improve concept map code validation
* Update observation validator for committee decision not to enforce Blood Pressure profile for Mean Blood Pressure
* Validate value set internal codeSystem references
* Split value set validation into 10k batches for very large extensional value sets
* Hack fix for opd-3
* Fix bug where using ontoserver when not appropriate
* Fix issues with inferSystem
* Don't require HL7 committee for contained resources in HL7 namespace
* Fix where validator was ignoring minimum cardinality for XML attributes (especially in CDA)
* Improved ConceptMap validation
* Updated IG versions used for -cda and -ccda CLI validation options.
* Change validator so that it marks value properties in primitive data types as illegal

## Other code changes

* Fix code system rendering for uri properties
* Fix broken links Bundle and Profile rendering
* Take copy of code when doing local validation
* WIP: major refactor of cross version analysis
* Add support for subsumes in tx client
* Don't generate snapshots when scanning structure definitions for resource names
* Work on ConceptMap infrastructure for cross-version analysis
* Fix bug where not rendering ConceptMap relationships
* Fix wrong URLs rendering Profiles and Questionnaires
* Fix bug using wrong version constant for R3
* Updates for R5 StructureMap syntax
* Support for case sensitive Code system tests
* Add TurtleGeneratorTests for R5
* Introduce new validator cliContext option disableDefaultResourceFetcher (#1526)
* Render contained resources when rendering Patient resources
* Fix bug in FML Parser
***NO_CI***
2024-02-28 05:04:13 +00:00
Grahame Grieve db5605a5ab fix compile problem 2024-02-28 15:30:12 +11:00
Grahame Grieve f22316d55f fix up structure mapping tests 2024-02-28 12:21:15 +11:00
Grahame Grieve c2c792cb78 render contained resources on patient 2024-02-27 23:53:16 +11:00
Grahame Grieve eb770f830a fix parsing bugs in StructureMap parser 2024-02-27 00:14:11 +11:00
Grahame Grieve 2bcc3fb7ae
Merge pull request #1568 from hapifhir/2024-02-gg-monster
2024 02 gg monster
2024-02-25 23:42:32 +11:00
Grahame Grieve 2bc028b86a Fix compile issue 2024-02-25 19:57:43 +11:00
Grahame Grieve c05ad6cb2c fix bug using wrong version constant for R3 2024-02-25 19:21:58 +11:00
Grahame Grieve e63a2ad16f updates for R5 StructureMap syntax 2024-02-25 19:20:52 +11:00
Grahame Grieve cec8a36d35 Fix wrong URLs rendering Profiles and Questionnaires 2024-02-25 19:20:24 +11:00
Grahame Grieve eaa83ae835 Fix bug where not rendering ConceptMap relationships 2024-02-25 19:19:14 +11:00
Grahame Grieve c2756a24ef work on ConceptMap infrastructure for cross-version analysis 2024-02-25 19:18:06 +11:00
Grahame Grieve 3a27e012be Don't generate snapshots when scanning structure definitions for resource names 2024-02-25 19:16:18 +11:00
Grahame Grieve 0642e123a1 Fix significant bug where validator gets internal child lists incorrect and doesn't do complete validation when switching between validating profiles and resources directly 2024-02-25 19:15:27 +11:00
Grahame Grieve df3456d293 Add support for subsumes in tx client 2024-02-25 19:14:12 +11:00
Grahame Grieve d5972caeb1 performance improvement for element model parsing - thanks Brian Postlethwaite 2024-02-22 17:52:49 +11:00
Grahame Grieve 4fdaee16a5 fix Crash on slicing a sliced element #862 2024-02-22 15:41:46 +11:00
Tim Prudhomme 7761be6197
Add TurtleGeneratorTests (#1528)
* Add TurtleGeneratorTests for R5

* Finish TurtleGeneratorTests setup

* Switch unit test to added example resource, disable others
2024-02-20 15:25:12 -05:00
dotasek e42079e482
Restore commented method verification (#1566) 2024-02-20 11:04:32 -05:00
Grahame Grieve d99fbfa191
Merge pull request #1565 from hapifhir/2024-02-gg-tx-fixes
2024 02 gg tx fixes
2024-02-12 19:23:05 +11:00
Grahame Grieve d128c2d3fc rebuild tx cache 2024-02-12 16:21:36 +11:00
Grahame Grieve 5b323644de Fix issues with inferSystem 2024-02-12 16:20:34 +11:00
Grahame Grieve b8a9b94b45 fix bug where using ontoserver when not appropriate 2024-02-12 16:20:10 +11:00
Grahame Grieve f74f87c33b disable test 2024-02-12 16:19:27 +11:00
Grahame Grieve 55cbc66fbf take copy of code when doing local validation 2024-02-12 16:19:19 +11:00
Grahame Grieve 1df3b9651b
Merge pull request #1563 from hapifhir/2024-02-gg-misc-fixes-1
2024 02 gg misc fixes 1
2024-02-11 22:45:09 +11:00
Grahame Grieve 85a8807e7b code 2024-02-10 23:11:56 +11:00
Grahame Grieve b548b98496 Split value set validation into 10k batches for very large extensional value sets 2024-02-10 23:11:23 +11:00
Grahame Grieve 487094ccc7 Fix broken links Bundle and Profile rendering 2024-02-10 23:10:53 +11:00
Grahame Grieve 2628010dff Fix code system rendering for uri properties 2024-02-10 23:10:31 +11:00
Grahame Grieve 20bf70ed68 fix bug loading R5 extensions with imported value sets 2024-02-10 22:51:32 +11:00
Grahame Grieve 7d4b36a582 fix bug copying constraints into Bundle.entry.resource profiles 2024-02-10 20:35:30 +11:00
dotasek af43ce9fbd
Restore and fix failing SimpleWorkerContextTests (#1557)
* Restore and fix failing tests

* Bump test cases version

* Use released test cases
2024-02-01 09:25:20 -05:00
markiantorno 3a1946e37d Updating version to: 6.2.16-SNAPSHOT and incrementing test cases dependency. 2024-01-30 11:13:01 +00:00
markiantorno 0bb2010409 Release: v6.2.15
## Validator Changes

* Fix bug in deciding whether a ValueSet is supported by the server
* Rework server decision making when multiple code systems being used
* Fix file type inference in ValidationService for unknown file types

## Other code changes

* Kindling related fixes for terminology stability
* Fix parameter type for system-version
* Fix mini-terminology server bugs around unknown systems
* Improvements to Identifier rendering
***NO_CI***
2024-01-30 10:29:12 +00:00
Grahame Grieve ebfd70477c fix mini-terminology server bugs around unknown systems 2024-01-30 19:05:49 +11:00
Grahame Grieve 975f4fd28b rework server decision making when multiple code systems being used 2024-01-30 19:05:20 +11:00
Grahame Grieve d01cc9d1d9 Improvements to Identifier rendering 2024-01-30 19:04:34 +11:00
Grahame Grieve e8f4bde1eb Fix formatting of error messages from terminology server 2024-01-30 19:03:54 +11:00
Grahame Grieve 9760b4134a kindling related fixes for terminology stability 2024-01-29 10:41:53 +11:00
Grahame Grieve 42bddb9fdb
Merge pull request #1554 from hapifhir/2024-01-gg-fix-expand-params
2024 01 gg fix expand params
2024-01-28 23:05:18 +11:00
dotasek.dev 46b535bd5c Restore _limit and _incomplete params 2024-01-26 11:18:23 -05:00
dotasek.dev 869166b0b3 Fix resolveOperationUri using slash instead of dollar sign 2024-01-26 11:13:44 -05:00
dotasek.dev 56d3da1722 Bump version 2024-01-26 11:12:00 -05:00
Grahame Grieve 81569a3984 remove duplicate way of handling parameters on expand value set 2024-01-26 06:27:24 +11:00
markiantorno f492c2114a Updating version to: 6.2.15-SNAPSHOT and incrementing test cases dependency. 2024-01-25 17:19:04 +00:00
markiantorno 485bb2a9a7 Release: v6.2.14
## Validator Changes

* no changes

## Other code changes

* Fix text creation on wrong xhtml node type
***NO_CI***
2024-01-25 16:34:27 +00:00
Grahame Grieve 07d81e3a5b
Fix additional bindings html generation issue (#1551)
* Fix additional bindings html generation issue

* Use new test cases snapshot

---------

Co-authored-by: dotasek <dotasek.dev@gmail.com>
2024-01-24 14:47:49 -05:00
Grahame Grieve 6004dfe8ea Fix additional bindings html generation issue 2024-01-20 06:43:35 +11:00
markiantorno 4ffe900fb3 Updating version to: 6.2.14-SNAPSHOT and incrementing test cases dependency. 2024-01-19 12:52:04 +00:00
markiantorno bebd1f31c1 Release: v6.2.13
## Validator Changes

* no changes

## Other code changes

* Fix for handling large expansions correctly
***NO_CI***
2024-01-19 12:17:24 +00:00
Grahame Grieve 1d08c506d0 release notes 2024-01-19 21:56:31 +11:00
Grahame Grieve 41c5f8fee5
Merge pull request #1549 from hapifhir/2024-01-gg-expansion-rework
Fix the way overly large value set expansions are handled
2024-01-19 21:54:51 +11:00
Grahame Grieve a3d4c0645d Fix the way overly large value set expansions are handled 2024-01-19 20:09:57 +11:00
markiantorno a85b5e74cd Updating version to: 6.2.13-SNAPSHOT and incrementing test cases dependency. 2024-01-19 03:37:05 +00:00
markiantorno 8ff31256fe Release: v6.2.12
## Validator Changes

* Handle terminology server errors better

## Other code changes

* Fix expansion related bugs and adjust tests accordingly
* Update test framework for changes to expansion functionality
* Update presentation of fixed and pattern values in profile views
* Handle toString for XhtmlNode when nodeType == null
***NO_CI***
2024-01-19 02:47:02 +00:00
Grahame Grieve 70f30a2fe9 update tests for changes to expansion functionality 2024-01-19 10:40:17 +11:00
Grahame Grieve f1d81856a5 update presentation of fixed and pattern values in profile views 2024-01-19 10:40:03 +11:00
Grahame Grieve bf57789467 Fix expansion related bugs and adjust tests accordingly 2024-01-19 10:39:29 +11:00
markiantorno 2156a44395 Updating version to: 6.2.12-SNAPSHOT and incrementing test cases dependency. 2024-01-18 03:15:19 +00:00
markiantorno 4ca3400a86 Release: v6.2.11
## Validator Changes

* Remove debugging code hiding error from server

## Other code changes

* fix broken links rendering questionnaires
* render target profiles on operation definition parameters
* fix up cvx importer
***NO_CI***
2024-01-18 02:26:19 +00:00
Grahame Grieve 42e3b9a948 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-01-18 11:46:49 +11:00
Grahame Grieve 6838576d9e fix broken links rendering questionnaires 2024-01-18 11:42:07 +11:00
Grahame Grieve 0502234ba3 render target profiles on operation definition parameters 2024-01-18 11:41:56 +11:00
Grahame Grieve da5e389fd3 render target profiles on operation definition parameters 2024-01-18 11:40:46 +11:00
markiantorno 0c431880f7 Updating version to: 6.2.11-SNAPSHOT and incrementing test cases dependency. 2024-01-17 16:48:24 +00:00
markiantorno 9c15aff0f3 Release: v6.2.10
## Validator Changes

* Fix issues with multiple terminology servers (should be live soon)
* Rework terminology system & cache to support new terminology server ecosystem
* Handle value set with exclusion filters when expanding
* Fix to consistent error messages when value sets can't be resolved

## Other code changes

* Fix bug processing empty structure maps
* Performance improvements to common IO routines, with test cases - see https://blog.qligier.ch/posts/2024-improving-perf-ig-publisher-io/ (thanks to Quentin Ligier)
***NO_CI***
2024-01-17 15:53:34 +00:00
Grahame Grieve 0a41d467b9 fix bug in external valueset processing 2024-01-17 23:39:02 +11:00
Grahame Grieve 8f5afdbcd1 fix bug with processing external valuesets 2024-01-17 23:31:54 +11:00
Grahame Grieve 686f0afaca add debugging code 2024-01-17 23:17:53 +11:00
Grahame Grieve 8a8a13182d fix BOM issue parsing FML 2024-01-17 22:21:27 +11:00
Grahame Grieve d70cefcfd4 url encode parameters to call to resolve code system server 2024-01-17 20:52:46 +11:00