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1094 Commits

Author SHA1 Message Date
James ce80007f8d Bump spring version and refactor examples 2017-01-29 22:55:22 -05:00
James Agnew 4963f8908b Merge pull request #533 from Robbert1/spring-4.3-compat 
correct ordering of codesystem dao types
 2017-01-29 17:58:56 -05:00
sekaijin a150a96089 dependencies convergence 
correct dependencies convergence
correct version use ${project.version}
 2017-01-29 19:22:28 +01:00
sekaijin 23784c1619 remove .settings .project .classpath file of eclipse 2017-01-28 17:13:47 +01:00
James 12598b4e3b Correctly handle declared extensions with multiple possible types 
Squashed commit of the following:

commit d6ea0552b7
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 09:04:58 2017 -0500

    FIx test

commit e5876f7d86
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 08:35:38 2017 -0500

    Work on extensison

commit 7e573c2299
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 07:27:25 2017 -0500

    Work on extensions

commit 234b4a0c1c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jan 26 06:25:47 2017 -0500

    More work on these extensison

commit 2eb780a690
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Jan 25 22:35:57 2017 -0500

    Work on multitype extensions
 2017-01-26 11:07:52 -05:00
James 8e0a904997 Add adapter for IServerOperationInterceptor 2017-01-24 13:34:30 -05:00
James Agnew 344e324929 Fix #544 
Squashed commit of the following:

commit 1ab9b58e9f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Tue Jan 24 10:46:56 2017 -0500

    Changes working now

commit 5c752cdace
Author: James <jamesagnew@gmail.com>
Date:   Tue Jan 24 08:43:04 2017 -0500

    Get JPA working with new uuid: logic

commit 127b76884a
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jan 23 21:11:18 2017 -0500

    Fix test

commit 599bbe236c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jan 23 18:42:46 2017 -0500

    Work on #544
 2017-01-24 10:47:24 -05:00
James Agnew a63b42d08f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-01-23 17:59:11 -05:00
James Agnew 222333059d Add test 2017-01-21 13:09:33 -05:00
James Agnew bde8aebc5a Merge pull request #467 from Robbert1/transaction-index-links 
fix resources links being correctly indexed when linking eachother as part of a single transaction bundle
 2017-01-20 19:12:18 -05:00
James Agnew d1542e98c5 JPA server was not correctly validating and expanding SCT codes 2017-01-19 17:37:43 -05:00
James Agnew 64e3435a8e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-01-19 15:50:48 -05:00
James Agnew e342d211d1 Add some logging and a test 2017-01-19 15:50:41 -05:00
James 56a25dc3c6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-01-18 22:18:50 -05:00
James f59ac8cf83 Version bump license header 2017-01-18 22:18:37 -05:00
James Agnew 495e57b4ec Allow processing of transactions without a servlet in context 2017-01-18 22:18:03 -05:00
James Agnew 837b12a690 Docs updates 2017-01-14 11:40:05 -06:00
James Agnew 322051a383 Fix failing tests 2017-01-14 07:55:42 -06:00
James Agnew fa1ad5ba85 Fix #519 - Issues with JPA capabilitystatement related to the _id param 2017-01-13 21:19:19 -06:00
James Agnew 37c40c4f9e Fix #503 - Checking authorization again patient compartment fails with delete operation 2017-01-13 11:06:00 -05:00
James af32c4b7e9 Websockets working once more on the public server 2017-01-12 08:59:51 -05:00
James Agnew a8eb4a1967 More websocket work 2017-01-11 22:12:41 -05:00
James Agnew 47a81ebd8f More websocket work 2017-01-11 21:23:39 -05:00
James Agnew d7c4016896 Websocket work 2017-01-11 21:10:10 -05:00
James 3b41d85952 Server interceptor methods were being called twice unnecessarily by the JPA server, and the DaoConfig interceptor registration framework was not actually useful. Thanks to GitHub user @mattiuusitalo for reporting! Fixes #532 2017-01-11 20:57:39 -05:00
James Agnew 5b7abf15dc Properly purge subscriptions 2017-01-11 18:19:46 -05:00
James Agnew fe24841350 Work on #532 2017-01-09 19:00:56 -05:00
James Agnew c7767937fc License version bumps 2017-01-09 17:48:42 -05:00
James e05b0e5d8a Add test for localizer and add some docs 2016-12-30 08:53:42 -05:00
Waveren, Robbert van 07525db83f correct ordering of codesystem dao types 2016-12-29 12:16:32 +01:00
James b448e13edd Version bump to 2.3 2016-12-20 19:01:31 -05:00
James 0ec61533a8 Publish 2.2 2016-12-20 19:00:37 -05:00
James Agnew 750d6d4655 Switch public server to use CapabilityStatement for metadata return type 2016-12-20 15:35:54 -05:00
James 7838d511d0 Fix typo in IHttpResponse 2016-12-19 11:29:05 -05:00
James Agnew 74a73e74c5 Dependency version bumps 2016-12-14 09:21:00 -05:00
jamesagnew a77c4270ae Generate schemas directly into class folder 2016-12-11 21:33:33 -05:00
James 901a85880c Update STU3 definitions and being in STU2.1 defs too 2016-12-10 19:51:25 -05:00
James ee63bbea74 Fix #516 - Handle STU3 invalid enum values with an appropriate exception 2016-12-10 14:14:22 -05:00
James 5149e581db Fix #521 - Wrong or missing ID body in update should be an error 2016-12-08 08:31:52 -05:00
James 2457dfd693 Bring back generated creation SQL 2016-12-08 07:07:29 -05:00
James Agnew ffefb79bf1 Fix crash in JPA when _include points to external reference 2016-12-01 12:43:31 -05:00
James Agnew f984ca723b Add unit test 2016-12-01 12:31:19 -05:00
James Agnew 888f42a032 Introduce new CORS interceptor and switch examples to use it 2016-11-21 18:30:51 +01:00
James Agnew 03935be97f Work on common FluentPath interface 2016-11-21 15:52:17 +01:00
James Agnew 5846ce4518 Make the parser configurable so that when parsing an invalid empty value (e.g. {"status":""} parser will either throw a meaningful exception or log a warning depending on the configured error handler. 2016-11-21 14:48:44 +01:00
James Agnew 4ed17457dd Work on CORS 2016-11-17 17:10:52 +01:00
James Agnew ca9223fb70 Add ability to disable stale search expiry 2016-11-17 10:01:23 +01:00
James 6314f5efb3 Fix structuredefinition regression 2016-11-14 12:04:56 -05:00
James 2d7592f7a8 Version bump to 2.2-SNAPSHOT 2016-11-11 22:39:45 -05:00
James 42295caa61 Site changes 2016-11-11 22:30:19 -05:00
James 2dd26b6367 Version bump to 2.1 2016-11-11 15:16:53 -05:00
James Agnew 846aecfe89 Merging #470 2016-11-11 10:45:53 -05:00
James Agnew 01afc49863 Documentation 2016-11-11 10:43:03 -05:00
James ef9f0bc35b Fix unneccesary database flush operation 2016-11-08 22:48:04 -05:00
James a5d5d3e031 Bump FHR version 2016-11-06 17:34:13 -05:00
James Agnew 9f37646518 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-11-03 11:28:24 -04:00
James Agnew 1a24ac2af2 Fix examples 2016-11-03 11:27:51 -04:00
James 3a5a771de7 Fix #484 - Correctly parse resources containing an empty div tag as the narrative 2016-11-03 07:51:11 -04:00
James Agnew f5bec16cb4 Fix tests for #472 2016-10-26 14:10:43 -04:00
James Agnew a246809c92 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-25 11:45:42 -04:00
James Agnew 3de62701cd Remove unused field in JPA server 2016-10-25 11:30:11 -04:00
James ccd304d2cf Add hook 2016-10-22 18:01:27 -04:00
James Agnew 27208127e0 Add test for #438 2016-10-21 11:40:50 -04:00
James Agnew e56c75e80c Switch Android library to use OkHttp by default 2016-10-14 16:15:27 -04:00
Robbert van Waveren 92a070430a fix resources links being correctly indexed when linking eachother as part of a single transaction bundle 2016-10-13 12:03:48 +02:00
James Agnew 7caf9b5ad9 Fix missing files from commit 2016-10-12 17:29:23 -04:00
James Agnew f47597d2ec Rename client param method 2016-10-12 14:51:47 -04:00
James Agnew 8c455d41b6 Rename method from #451 2016-10-12 14:47:51 -04:00
James Agnew 97cd78e6bf Fix #454 - Chinese characters were not being correctly normalized 2016-10-12 12:50:56 -04:00
James 09af42200c License headers 2016-10-11 05:30:22 -04:00
James Agnew b1266cca71 JPA server shouldn't report a totalCount in Bundle of "-1" when 
there are no results
 2016-10-07 17:52:06 -04:00
James Agnew b37a1edaae Fix offset error when returning multiple pages in JPA search 2016-10-07 17:42:02 -04:00
James Agnew 0093403860 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-07 11:31:12 -04:00
James Agnew 2c4139dc82 Allow fluent client to handle return types other than Parameters when 
invoking operations
 2016-10-07 11:29:53 -04:00
James Agnew f5eda76388 Use new STU3 mimetypes by default 2016-10-06 12:17:59 -04:00
James a4975887b8 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-06 06:28:06 -04:00
James 2a5c26b08b Dependency bump 2016-10-05 05:17:07 -04:00
James Agnew 1fd881d8f8 Return an error if a parameter is called with a chain even though it 
doesn't support chaining
 2016-10-04 17:02:13 -04:00
James Agnew 1180860590 Fix test errors 2016-09-30 18:12:33 -04:00
James Agnew 22c2d301dc Merge remote-tracking branch 'origin/jpa_dep_cleanup' 2016-09-30 14:04:24 -04:00
James Agnew ff4755fbf3 Fix #441: Correctly handle search with chains across a field with choice 
type
 2016-09-30 14:03:20 -04:00
James f39ca7eb2f Start del cleanup 2016-09-30 08:34:25 -04:00
James Agnew 8a9a031a8d Fix uploading CLI DSTU2 examples 2016-09-28 16:25:01 -04:00
James Agnew eba136d706 Correctly handle custom types in programatic access to JPA 2016-09-27 14:22:48 -04:00
James c784d5647b Add unit test 2016-09-25 13:05:24 -04:00
James Agnew 73959e3e26 Remove redundant files 2016-09-21 16:59:43 -04:00
James Agnew 3d73aad275 Fix unit tests 2016-09-21 16:58:57 -04:00
James Agnew ae97165a0a Add interceptor method on server which will be called after all other 
processing
 2016-09-18 16:08:16 -04:00
James Agnew b20a5e6b90 Bundles for history did not validate 2016-09-18 10:28:24 -04:00
James Agnew d8c99363db Patch modifications 2016-09-18 08:35:54 -04:00
James Agnew 40286f49c2 Merge branch 'patch' of github.com:jamesagnew/hapi-fhir into patch 2016-09-17 23:40:54 -04:00
James Agnew 6e97936eca More work on patch 2016-09-17 16:55:21 -04:00
James Agnew e1b41d8bf5 Add flag to CLI tool 2016-09-16 13:16:46 -04:00
James Agnew d41b412dee Fix #440 - Don't depend on Saxon 2016-09-08 15:56:15 -04:00
James Agnew dbaff992b0 Fix test 2016-09-08 14:22:47 -04:00
James Agnew 6357c38180 Support _has param in conditional URLs in JPA 2016-09-08 13:14:15 -04:00
James Agnew 202a1ea885 Fix web testing UI regression 2016-09-06 17:59:04 -04:00
James Agnew 906bcfb803 Version bump to 2.1 2016-08-30 10:55:55 -04:00
James Agnew d27aad487e Bump to 2.0 release 2016-08-30 10:50:04 -04:00
James 333aa0afde Correctly update versions on transactipn update 2016-08-28 22:56:59 -04:00
James ddc0abe4ed Update to final STU3 ballot definitions 2016-08-26 07:55:10 -04:00
James acdbdc0be7 Fix #426 - Extension with datatype of ID failed to parse 2016-08-25 07:32:37 -04:00
James db17342149 Fix tests 2016-08-23 06:52:47 -04:00
James 1eb4dd06be Fix tests 2016-08-22 22:03:02 -04:00
James 35a890db34 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-08-22 07:42:02 -04:00
James b70165630a Improve partial string handling in JPA server 2016-08-22 07:05:49 -04:00
James Agnew da8abca1ff Add custom extension example 2016-08-21 10:24:42 -07:00
James Agnew eee168ced6 Add support for conditional operations to AuthorizationInterceptor 2016-08-15 13:35:50 -04:00
James f64337b651 Fix test 2016-08-14 13:22:42 -04:00
James b0d19c3a65 Fix #423 - Encode custom types with custom type fields correctly 2016-08-14 13:05:16 -04:00
James 779b66c5e4 Add unit test 2016-08-11 20:55:11 -04:00
James Agnew ac2d55139d Add option to upload-terminology for security header 2016-08-09 15:38:30 -04:00
James Agnew 3e7cd153fd Update DSTU3 definitions to latest 2016-08-05 12:36:41 -04:00
jamesagnew 41b58108f2 Bump version dependencies and return 200 for conditional delete with no matches 2016-07-25 08:46:02 -04:00
jamesagnew fd4979f56a Fix compile issues 2016-07-24 11:11:27 -04:00
jamesagnew ca97c0d000 Fix #401 - Don't clear fullUrl on stored bundles 2016-07-24 11:02:20 -04:00
jamesagnew 7dbd5a21ca Fix tests 2016-07-24 09:20:54 -04:00
jamesagnew 350e82b6cf Fix #403 - Allow references to keep versions when encoding 2016-07-23 18:48:00 -04:00
jamesagnew c532d1a25b Add test for #410 2016-07-21 07:35:15 -04:00
James Agnew 8f7a374a25 Auto-detect disabled hibernate search 2016-07-18 16:56:41 -04:00
jamesagnew 196c11bfa2 Use new style mimetypes but keep supportuing the old ones as well 2016-07-17 18:35:06 -04:00
James Agnew 0b69367b11 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-13 09:22:19 -04:00
jamesagnew fa37afb61f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-12 21:44:52 -04:00
jamesagnew ed941a116b Update to use GSON 2016-07-12 21:44:40 -04:00
James Agnew c550681aeb Update defs to 1.5.0 versions 2016-07-12 18:29:10 -04:00
James Agnew c3e9f618eb Version bump to 2.0-SNAPSHOT 2016-07-12 11:12:07 -04:00
jamesagnew acaf2135c5 Finalize 1.6 release 2016-07-06 07:29:20 -04:00
James Agnew 83c2e7d1fb Another test fix 2016-07-05 18:22:08 -04:00
James Agnew d63e289cbe Validation fixes 2016-07-05 16:56:06 -04:00
James Agnew 344b1256ce Add tests 2016-07-04 18:32:57 -04:00
jamesagnew 32bdd14639 Work on term service 2016-07-02 17:14:36 -04:00
jamesagnew 4a49e5b7f9 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-01 14:31:25 -04:00
jamesagnew b8f1f39ead Add tests and get :below queries working for built-in code systems 2016-07-01 08:51:47 -04:00
James Agnew 7ef48413c4 Term service enhancements 2016-06-30 17:45:41 -04:00
James Agnew 1eb1dc7e36 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-06-29 09:56:12 -04:00
James Agnew ea99672e6c Add tests for term svc 2016-06-29 09:56:05 -04:00
jamesagnew 9b6f548970 Work on term service, and allow child classes when serializing 2016-06-29 08:08:42 -04:00
James Agnew 8c8b7b8234 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-06-27 08:24:33 -04:00
James Agnew cf0ac8fc04 Work on term service 2016-06-27 08:22:09 -04:00
jamesagnew 40a65fb2cc Try to fix test 2016-06-27 05:55:53 -04:00
jamesagnew c2dbcc7ff0 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-06-26 23:12:26 -04:00
jamesagnew e9cb518012 Fix teerm sevice indexing 2016-06-26 23:10:02 -04:00
jamesagnew 556058a7b7 Tests passing 2016-06-25 10:55:31 -04:00
James Agnew db0a208927 Work on terminology importing 2016-06-24 18:40:44 -04:00
jamesagnew 2e8c20dc83 More work on terminology services, and add support to operations to AuthorizationInterceptor 2016-06-20 07:19:08 -04:00
jamesagnew 36505c60d8 More work on term service importing 2016-06-19 10:35:27 -04:00
jamesagnew a7cbb5c022 More test coverage 2016-06-18 13:32:45 -04:00
jamesagnew b3d8d453de Improve test coverage and clean up UnclassifiedServerFailureException processing 2016-06-18 10:37:43 -04:00
jamesagnew 785ce1deb9 Remove some dead code and improve test coverage 2016-06-17 07:40:17 -04:00
jamesagnew dcecde5db9 Improve test coverage 2016-06-16 22:52:10 -04:00
jamesagnew 9392d8c104 Add logging to test 2016-06-15 22:30:03 -04:00
James Agnew 1683cf8cef Switch to jacoco 2016-06-15 17:34:50 -04:00
James Agnew e2f1beef2c Fix some tests 2016-06-14 22:03:24 -04:00
James Agnew f3dcc3e893 Add lots of tests 2016-06-14 17:57:08 -04:00
James Agnew 1166a2ee67 Work on support for _at parameter in history operation 2016-06-13 07:31:25 -05:00
James Agnew 23840ecb7a Fix some tests 2016-06-11 06:43:27 -05:00
James Agnew 1d2aee3dbe Try to fix tests 2016-06-10 22:43:00 -05:00
James Agnew fd8d67b9cd Fix more unit tests for #380 2016-06-10 18:57:44 -05:00
James Agnew a3484f84c1 Work on #381 - Still need to apply these changes to STU3 type 2016-06-09 21:48:53 -04:00
James Agnew 0a2b4290ed Fix #370 - Validation failure when validating certain STU3 resources 2016-06-08 14:21:18 -07:00
James Agnew 7e57aed5d6 Significant performance enhancements for context startup 2016-06-06 11:15:11 -07:00
James Agnew 99568a4b30 Clean up client fluent param types and add some test coverage 2016-06-05 11:33:43 -04:00
James Agnew 87eabe6bf8 More work on terminology server 2016-06-05 09:40:06 -04:00
jamesagnew f4b9c6423c Work on terminology service 2016-06-04 12:16:33 -04:00
jamesagnew 32cebb2a9f More terminology service work 2016-06-03 08:16:40 -04:00
jamesagnew 1b8843aa5e More work on terminology service 2016-06-01 09:10:47 -04:00
jamesagnew 820d1e0165 Fix build 2016-05-30 06:38:40 -04:00
James Agnew f45ad117fe Improve error messages for invalid validate request 2016-05-29 22:23:30 -04:00
James Agnew a306e3136f Try to fix build 2016-05-29 18:45:42 -04:00
James Agnew 9fe9cc1e4c Sync RI and fix tests 2016-05-29 17:52:26 -04:00
James Agnew eb3b656a5f Syn RI - Build still failing :( 2016-05-28 12:53:59 -04:00
James Agnew fd7f9a9b98 Auto close contextx in JPA tests 2016-05-27 10:27:32 -04:00
jamesagnew cd2af98064 Add method to upload SCT to JPA server 2016-05-27 08:56:36 -04:00
jamesagnew 69266dc7d0 Add terminology uploader 2016-05-26 22:18:12 -04:00
jamesagnew badcbfc0ee More work on SNOMED CT terminology loader 2016-05-26 07:53:36 -04:00
jamesagnew 35ffbf1568 Sync DSTU2 validator with RI 2016-05-24 09:22:16 -04:00
jamesagnew efe9cd1dd1 Work on term svc 2016-05-24 06:34:06 -04:00
jamesagnew 635398a754 Update reindexing 2016-05-22 18:22:49 -04:00
jamesagnew de65184afb Fix tests 2016-05-21 20:52:37 -04:00
jamesagnew 3d8776f6ed Fix #363 - Allow remote references in JPA resources 2016-05-21 12:58:04 -04:00
jamesagnew 81d68b07f8 Work on term svc 2016-05-19 06:15:58 -04:00
James Agnew 6c3446dee1 Fix build 2016-05-17 11:30:57 -04:00
jamesagnew ddb35d0faa Merge branch 'term_svc' of github.com:jamesagnew/hapi-fhir into term_svc 2016-05-17 09:05:47 -04:00
jamesagnew 78fa6eaeaf More work on terminology service 2016-05-17 09:05:37 -04:00
James Agnew 7942d69d5d Accept conditional updates with _id as parameter 2016-05-16 19:11:25 -04:00
jamesagnew c7d191dc38 Fix all tests 2016-05-14 16:59:31 -04:00
James Agnew 309b67c010 Fix tests 2016-05-13 19:37:49 -04:00
James Agnew d5e2170595 Don't discard _count from parameters when method has @Count 2016-05-13 19:13:39 -04:00
James Agnew 563f4e4c46 Treat date eq params correctly 2016-05-13 18:49:41 -04:00
James Agnew abd8bc2f14 Work on term svc 2016-05-13 17:40:56 -04:00
James Agnew c94f4bb19b Work on term services 2016-05-11 06:30:45 -04:00
James Agnew 3e77d3e37e Add _has support (this is an experimental parameter being tested) 2016-05-10 11:47:30 -04:00
James Agnew bca8589177 Index DSTU3 timing datatypes 2016-05-09 16:32:31 -04:00
James Agnew 975dfe4fa4 Fix build 2016-05-09 13:10:12 -04:00
James Agnew 061243b5c7 Allow delete bundle to contain multiple deletes for the same resource 2016-05-08 13:11:55 -04:00
James Agnew e1ab2856e0 Fix build 2016-05-08 10:29:08 -04:00
James Agnew adeb15809b Fix validator for documents 2016-05-07 16:47:34 -04:00
James Agnew af2b702aa4 Fixes from Montreal connectathon 2016-05-07 14:24:33 -04:00
James Agnew 4ae4b1a8d8 Support composite parametrs with quantity type in JPA 2016-05-06 18:43:07 -04:00
James Agnew 82c1e687fd Fix NPE in LoggingInterceptor 2016-05-04 11:48:50 -04:00
James Agnew 7429a382dd Fix test 2016-05-03 10:12:03 -04:00
jamesagnew cce0ce6b8e Add parser for URL parameters to avoid Servlets using ISO-8859-1 instead of UTF-8 2016-05-03 08:58:56 -04:00
jamesagnew dcd32b6127 Correctly handle search parameter target types in JPA 2016-05-03 07:03:44 -04:00
James Agnew 3e8638a65f Fix tests 2016-05-02 19:03:36 -04:00
James Agnew dd95a52240 Get fluentpath entirely working in JPA 2016-05-02 18:04:42 -04:00
James Agnew 804149205a Work on getting tests passing 2016-05-02 11:42:55 -04:00
jamesagnew 5086145132 Add targets to search parameters 2016-05-02 08:10:43 -04:00
jamesagnew 2bc1950bc1 JPA server transactions sometimes created an incorrect resource reference if a resource being saved contained references that had a display value but not an actual reference. Thanks to David Hay for reporting! 2016-04-29 09:21:12 -04:00
jamesagnew d45a9b67dc Allow forced IDs to be reused between resource types 2016-04-24 19:24:55 -04:00
jamesagnew 38e80531bb Bump version to 1.6-SNAPSHOT 2016-04-22 07:05:05 -04:00
jamesagnew dd3f1dd33c Fix #345 - ResponseValidatingInterceptor throws an exception with response has no content 2016-04-22 07:04:14 -04:00
jamesagnew 246a7c5e16 Fix test 2016-04-21 07:51:14 -04:00
James Agnew a8b121d868 Try to fix tests 2016-04-20 09:03:43 -04:00
James Agnew 81fa46820a Correctly support _summary=search option 2016-04-19 21:58:20 -04:00
jamesagnew 59c44a3b0b More test fixes 2016-04-17 20:57:27 -04:00
jamesagnew 12a66a9438 More test fixing 2016-04-17 20:02:50 -04:00
jamesagnew f3a41570d3 Try to get tests workign on Travis.. yet again 2016-04-17 19:25:11 -04:00
jamesagnew 846e216c04 Fix tests 2016-04-17 12:58:36 -04:00
jamesagnew 3f2b5fdeb7 Get security interceptor working 2016-04-16 10:22:43 -04:00
jamesagnew 533c0c87ab Fix tests 2016-04-14 09:14:32 -04:00
jamesagnew 8a37ed3b59 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-04-14 06:38:08 -04:00
jamesagnew 0780b7e472 Add tests 2016-04-14 06:36:29 -04:00
James Agnew a090f5481f Try to get cobertura working 2016-04-13 10:33:58 -04:00
jamesagnew d7c683f6b9 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-04-11 09:08:34 -04:00
jamesagnew 2f37015d57 Clean up parsers so that elements are always encoded according to their order in the structures that contain them 2016-04-11 08:36:12 -04:00
James Agnew 88157fe1a6 Test data uploader fixes 2016-04-08 16:31:42 -04:00
jamesagnew 8588bdfd1f Fix #331 - Don't split paths on or within words 2016-04-07 10:53:49 -04:00
jamesagnew b81a343f5d Add support for JPA searches with _tag:not=foo 2016-04-07 09:50:05 -04:00
jamesagnew ad34e38dee Work on _tag:not=foo 2016-04-06 07:55:42 -04:00
James Agnew 0e8962d18c Add license headers 2016-04-05 16:34:55 -04:00
jamesagnew 18b3d0df65 Update to DSTU3 Montreal definitions 2016-04-03 18:14:31 -04:00
James Agnew 19c00a3620 Try to reduce memory use for Travis 2016-04-01 17:09:30 -04:00
James Agnew 21b42acc94 Update licenses 2016-03-29 13:01:51 -04:00
James Agnew 01b62a9e11 Add test for #316 2016-03-28 21:00:53 -04:00
James Agnew 46ba27ec8f Work on security interceptor 2016-03-28 20:51:27 -04:00
James Agnew bba9f5b584 Try to avoid deadlocks in complicated queries 2016-03-27 09:38:01 -04:00
James Agnew 1aebff9a43 Add RES_ID indexes to help performance searchin across large datasets 2016-03-27 08:59:39 -04:00
James Agnew f9fa6265df Correctly handle JPA search by token with system but no code 2016-03-25 16:20:43 +01:00
James Agnew c8173810f4 Attempt to correct build issues 2016-03-16 18:00:57 -04:00
James Agnew 3922ff026e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-03-16 17:42:54 -04:00
jamesagnew c80b29fc45 Fix test 2016-03-16 08:13:35 -04:00
jamesagnew 9aa7eea274 Add mode to parser to force it to not encode certain elements when serializing 2016-03-16 07:53:21 -04:00
James Agnew 9c8d9db7e6 Use separate index columns 2016-03-15 10:35:24 -04:00
jamesagnew 96d6fa1b8a Work on terminology services 2016-03-15 10:03:22 -04:00
James Agnew 00ced6a652 Improve performance of _lastUpdated queries in JPA server 2016-03-14 06:31:45 -04:00
James Agnew 6ddf91d9e2 Correctly handle extended operation in annotation based client where the 
response is a raw resource and not a Parameters resource
 2016-03-12 15:10:02 -05:00
James Agnew ce253bed70 Properly deserialize bound codes 2016-03-12 13:23:55 -05:00
jamesagnew 232afee955 Improved error messages for #305 2016-03-11 07:56:00 -05:00
jamesagnew ed92f64e52 Fix #305 - Don't allow update resource body IDs to be missing or incorrect 2016-03-10 07:44:05 -05:00
jamesagnew 990ef16f78 Adding a test 2016-03-10 06:56:51 -05:00
jamesagnew 3897167518 Return correct bundle type on $everything operation 2016-03-09 23:11:40 -05:00
James Agnew 6f79f6c5e2 Keep the complete resource history in the history table, including the 
current version
 2016-03-09 15:34:49 -05:00
James Agnew 3bfcb57783 Page JPA search results to the database 2016-03-07 07:23:44 -05:00
James Agnew 8de41ca8b4 Attempting to reduce memory usage during tests 2016-03-06 14:38:18 -05:00
jamesagnew 99a4b2c29e Refactor JPA SearchBuilder 2016-03-05 20:46:04 -05:00
jamesagnew 5078b6aebe Remove unneeded files from Git 2016-02-28 14:06:59 -05:00
jamesagnew 1da5855c9c Add Eclipse files to git 2016-02-28 14:02:29 -05:00
jamesagnew 3f363eff9f Fix compile issues from merge 2016-02-27 09:42:15 -05:00
James Agnew 7fdbee6f21 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-02-26 18:20:32 -05:00
James Agnew 39f6420066 Start working on compartment support 2016-02-26 18:16:35 -05:00
James Agnew 1ba0ae3960 Support inline match URL references, per Simone's requast for the next 
connectathon
 2016-02-23 13:12:30 -08:00
jamesagnew 6cc60624c6 Fix comment 2016-02-17 08:50:35 -05:00
jamesagnew 4975d212fa Add userdata map to interceptors which can be passed around 2016-02-17 08:05:55 -05:00
jamesagnew 9b304748ad Work on terminology service 2016-02-16 21:29:00 -05:00
jamesagnew 1f875c1ca6 Try to fix build 2016-02-15 11:22:19 -05:00
jamesagnew c1141eb18f Reorganize how search param prefixes are handled and modelled based on new DSTU2 style prefixes 2016-02-15 10:05:39 -05:00
jamesagnew 23f9292b50 Add support for comments in XML and JSON parsing/encoding 2016-02-08 22:05:17 -05:00
James Agnew f21851099c Version bump 2016-02-08 13:59:09 -05:00
James Agnew 68b816dce7 Prepare for 1.4 release 2016-02-03 16:56:32 -05:00
James Agnew e0e52f96c6 Version bump to 1.4 (finally!) 2016-02-03 15:25:32 -05:00
jamesagnew 32daeb6f58 Switch DSTU2.1 to DSTU3 per FMB's decision 2016-02-01 08:55:58 -05:00
James Agnew 914f615b8e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-01-28 11:35:16 -05:00
James Agnew 7ed14d538a Remove warning 2016-01-24 14:53:40 -05:00
jamesagnew 944afc2785 Add better constructors for date types 2016-01-20 07:40:57 -05:00
James Agnew f9960b22d5 Clean up validation 2016-01-15 18:44:28 -05:00
James Agnew d290110126 Fix validation 2016-01-15 18:02:20 -05:00
James Agnew 589059256f Correct issues uncovered during connectathon 2016-01-11 07:42:13 -05:00
James Agnew 552842e547 Validator enhancements 2016-01-08 16:23:27 -05:00
jamesagnew e436254c32 More fixing build 2016-01-08 09:07:59 -05:00
jamesagnew bf2e12e22c More tweaking for stupid travis 2016-01-08 08:26:53 -05:00
jamesagnew fbcf366ffa Try to reduce unit test memory for Travis 2016-01-07 23:03:54 -05:00
jamesagnew cabdde8914 Still trying to get travis working! 2016-01-07 21:13:17 -05:00
James Agnew 50a9995c55 Validator fixes 2016-01-07 18:37:15 -05:00
James Agnew 479da24cfb Bump license files 2016-01-07 08:50:07 -05:00
James Agnew a54cb06c03 More travis cleanup 2016-01-06 14:02:20 -05:00
James Agnew 0491dbe654 More travis 2016-01-06 10:25:40 -05:00
James Agnew 7005cd52d9 Performance tweaks to the validator and get the DSTU2.1 endpoint working 
with validation
 2016-01-04 17:57:00 -05:00
jamesagnew 685bd9345b Add request/response validator interceptors 2016-01-03 21:52:11 -05:00
jamesagnew ccc71c3bd3 Tests should be passing now 2016-01-03 00:19:16 -05:00
jamesagnew 5789db8743 Remove dependency on cobertura at compile time 2016-01-02 10:55:52 -05:00
jamesagnew 718a26671f DSTU2.1 structures working 2016-01-01 16:59:19 -05:00
jamesagnew 056900f324 Lots more work on DSTU2.1 structures 2015-12-30 11:27:12 -06:00
jamesagnew 7692e5d714 More work on DSTU2.1 structs 2015-12-22 09:32:06 -05:00
jamesagnew 2469aa3725 Lots of DSTU2.1 structure work 2015-12-20 23:35:47 -05:00
jamesagnew aaf85f2323 Lots of work on DSTU2.1 structures 2015-12-20 09:29:52 -05:00
jamesagnew a623003a56 Fix #240 - Support target resource type in server _include and _revinclude values 2015-12-14 21:50:35 -05:00
James Agnew 9ef0498775 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-12-14 10:56:33 -05:00
jamesagnew 97d6d09663 Work on #240 - Not yet working in JPA 2015-12-14 08:17:33 -05:00
James Agnew 117f9eb977 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-12-10 08:24:30 -05:00
James Agnew 85ec9d9264 Work on 2.1 structures 2015-12-10 08:24:12 -05:00
jamesagnew 83b664e55b Get travis building again 2015-12-04 08:03:16 -05:00
jamesagnew 67eb06665e Work on test indexing 2015-12-03 22:41:37 -05:00
jamesagnew 8ed9ca83af Fix build 2015-12-03 21:52:40 -05:00
jamesagnew e176d9a4b7 Try to fix travis 2015-12-03 20:54:48 -05:00
James Agnew 547b5290a4 Update resource defs 2015-12-01 18:35:24 -05:00
jamesagnew fcdf80c6a7 Only do one pass of validation during a JPA transaction 2015-11-29 16:48:57 -05:00
jamesagnew d47e0e5e77 Add DSTU2.1 resources 2015-11-29 11:43:09 -05:00
jamesagnew e6b47855e6 Merge branch 'master' of git://github.com/petervanhoute/hapi-fhir into petervanhoute-master 2015-11-27 14:59:53 -05:00
jamesagnew 14e326c2bd Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-11-26 06:57:08 -05:00
jamesagnew 9c9ffe1fb7 Remove dependency on JDK 7 2015-11-26 06:56:52 -05:00
James Agnew 2f12c9ed01 Bump version to 1.4-SNAPSHOT 2015-11-15 20:11:05 -05:00
James Agnew 5d13e660b0 Add header file 2015-11-15 13:56:59 -05:00
James Agnew f9f33f059b Version bump to 1.3 2015-11-15 12:53:02 -05:00
James Agnew 8c087f053a Cleanup for #254 2015-11-15 12:52:46 -05:00
James Agnew c516050716 Merge pull request #254 from cmikeb1/master 
Added the ability to wire the JPA conformance providers
 2015-11-15 12:47:55 -05:00
jamesagnew e7e820ee52 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-11-08 11:14:22 -05:00
jamesagnew dfced5b2a5 Fix tests 2015-11-08 11:13:58 -05:00
jamesagnew 35a6b4dbf0 Fix #253 - Process JPA entries in the correct order 2015-11-08 09:36:04 -05:00
C. Mike Bylund 3ff6822599 Added the ability to wire JpaConformanceProviderDstu1 & JpaConformanceProviderDstu1 with spring, as accommodated by [RestfulServer.java](d3685e72ba/hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/RestfulServer.java (L1313)) 2015-11-06 21:20:06 -07:00
James Agnew 65c4250ed3 Update android distribution 2015-11-06 18:53:54 -05:00
jamesagnew 4545b4fb7f Don't create a new version when reindexing resources 2015-11-04 08:26:33 -05:00
jamesagnew 1fb9f02d14 Work on fulltext suggestions 2015-11-03 21:34:35 -05:00
jamesagnew 3fc7a16735 Fulltext searching works 2015-11-02 08:12:36 -05:00
jamesagnew a6d4de1f3e Add support in JPA for _content and _text for $everything operation 2015-10-31 17:09:32 -04:00
James Agnew 2cc88d76eb Cleasn up JPA interceptors 2015-10-29 16:44:51 -04:00
James Agnew d3685e72ba Fix #241 and fix #247 - Don't encode UUID IDs on resources, and preserve 
bundle type when retrieving pages
 2015-10-29 15:38:19 -04:00
jamesagnew f7dab9ff64 Doc updates 2015-10-29 07:51:59 -04:00
jamesagnew 30ab0203a3 Refactor search capability in JPA out of resource specific module 2015-10-28 08:44:52 -04:00
jamesagnew 65598c200e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-10-28 07:39:18 -04:00
jamesagnew f3552015cc Work on splitting out search in JPA 2015-10-27 20:23:49 -04:00
James Agnew 43c1212840 Revamp the interceptor framework for JPA 2015-10-27 18:34:27 -04:00
jamesagnew c31900b827 JPA performance tweaks: Avoid unneccesary fulltext index pass during transaction and tag lookup 2015-10-25 12:18:21 -04:00
James Agnew 8d515feb6d Fix #242 - Allow compartment and read method to coexist for server 2015-10-21 11:58:19 -04:00
James Agnew d838a2bd4b Reduce JPA uri param length from 256 to 255 to accomodate MySql 2015-10-21 10:37:56 -04:00
James Agnew 06bdce8bbc Subscription CLI updates 2015-10-20 18:21:49 -04:00
James Agnew 5edd290013 More work on JPA server transactions 2015-10-20 10:52:29 -04:00
James Agnew ae416dcd62 Improve nexted search/read handing in transactions in JPA server 2015-10-20 10:35:18 -04:00
James Agnew 9b5598e2ab Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-10-19 20:22:11 -04:00
James Agnew 6729ea0479 Work on support for transaction searches with paging in JPA 2015-10-19 20:21:06 -04:00
jamesagnew 938a251ae9 Cleanup tests for java config in JPA 2015-10-19 20:19:40 -04:00
jamesagnew 9c0f6f993d Finish converting Spring from XML to Java config 2015-10-17 09:39:27 -04:00
James Agnew 6c321b83c8 Get examples working with Java config 2015-10-16 15:41:28 -04:00
jamesagnew eeac5e6ac0 Java config almost working 2015-10-16 08:57:07 -04:00
James Agnew febb15b78e Work on java config 2015-10-15 17:21:20 -04:00
jamesagnew e1eed8ce5e One test works.. 2015-10-15 09:10:06 -04:00
jamesagnew 7e2d486d17 Working on java config 2015-10-15 08:27:58 -04:00
James Agnew e9d18af5d9 Bump library versions 2015-10-14 18:11:52 -04:00
James Agnew 0430eb1626 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-10-13 12:13:43 -04:00
jamesagnew 6d93cbcaae Get content search working correctly 2015-10-13 09:18:34 -04:00
jamesagnew cb886c2975 Remove unused BeanUtils 2015-10-12 19:54:23 -04:00
jamesagnew 0ab8ee386f Add documentation for CLI 2015-10-12 18:47:49 -04:00
jamesagnew b827823004 Improve efficiency of JPA queries with _lastUpdated 2015-10-12 09:32:25 -04:00
jamesagnew 8c0b665565 Fix subscription issue 2015-10-10 10:06:41 -04:00
James Agnew 16989435b0 Don't export a _format on paging links if the request didn't have one 2015-10-09 17:42:45 -04:00
jamesagnew 588016e406 Merge branch 'master' into fulltext 2015-10-09 09:15:48 -04:00
jamesagnew b4c86d033e More work on fulltext search and add a failing test for subscriptions 2015-10-09 09:12:41 -04:00
James Agnew e29e10450c Add validation 2015-10-07 18:12:38 -04:00
jamesagnew ad868038a8 Work on Lucene searching 2015-10-07 09:01:32 -04:00
jamesagnew 3050d4776c Merge branch 'master' into fulltext 2015-10-06 19:42:05 -04:00
James Agnew 9fef4f6bab Allow valueset operations to work against type in JPA 2015-10-06 18:53:09 -04:00
James Agnew a337528e1c Refactor ValueSet JPA RP to use optional ID params 2015-10-06 13:01:32 -04:00
James Agnew b62eb1168c Allow server operations to work at the type level 2015-10-06 11:45:49 -04:00
jamesagnew 50c43bdb29 Fix tests 2015-10-06 09:08:25 -04:00
James Agnew 3d330de8ef Fix compile issue 2015-10-06 06:57:55 -04:00
James Agnew 8e8db1801c Start work on FT search 2015-10-06 06:46:51 -04:00
James Agnew 0958ab6f16 Refactor $everything operations on JPA so that they perform better 2015-10-05 16:49:50 -05:00
James Agnew 80575b5380 Generic client now allows search by URL 2015-10-05 15:30:30 -04:00
James Agnew 43aad1eb98 Properly support chains in JPA conditional URLs 2015-10-04 15:38:58 -04:00
James Agnew 48d56b4722 Fix connectathon discovered issues 2015-10-03 23:52:30 -04:00
James Agnew c666b9c196 Fix compile issues 2015-10-03 16:11:47 -04:00
James Agnew e7e8f8dd81 Use correct status codes for failed deletes, and support multi delete in 
JPA
 2015-10-02 18:18:54 -04:00
James Agnew aa32e6f0a9 Improve ValueSet operations in JPA 2015-10-02 12:37:56 -04:00
James Agnew 12d95bf43c Support patient and encounter $everything operations at the type level 
in JPA
 2015-10-02 08:09:17 -04:00
James Agnew 119a4f36d9 Add error checking and better handling for match URLs in JPA server 2015-10-01 16:54:34 -04:00
jamesagnew 900c93949a Work on subscriptions, and correct indexing of codes in JPA 2015-10-01 08:56:17 -04:00
jamesagnew c385384269 More work on subscriptions 2015-09-30 08:31:38 -04:00
jamesagnew f9e4a3e1b5 Fix #233 - elementQuantity gets incorrectly encoded as elementDuration 2015-09-29 19:41:31 -04:00
jamesagnew 04764ed07e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-09-29 17:55:59 -04:00
jamesagnew bc910a1d4c Work on dynamic subscriptions 2015-09-29 17:55:49 -04:00
James Agnew ca8c257833 Support lastupdate filtering and sorting on JPA everything operation 2015-09-29 13:24:33 -04:00
James Agnew 1cc6a05273 FIx validation for resources using v2 tables 2015-09-29 10:51:36 -04:00
James Agnew 79047ef6ab Add test for #226 and refactor $everything into DAO 2015-09-28 14:09:15 -04:00
James Agnew e7ad9a96be Fix build 2015-09-28 10:40:13 -04:00
jamesagnew 9492744018 Work on subsciprions 2015-09-28 09:06:57 -04:00
jamesagnew f818a3b478 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-09-26 08:49:37 -04:00
jamesagnew 41f01b322f Work on subscriptions 2015-09-26 08:49:06 -04:00
James Agnew 51a046ea26 Handle sort by number, uti and token 2015-09-25 16:53:22 -04:00
James Agnew 291fd21836 Fix build 2015-09-24 15:12:06 -04:00
James Agnew 4ff7452c9b Fix #227 - JPA server should reject resources with a reference that 
points to an incorrectly typed
				resource (e.g. points to Patient/123 but
resource 123 is actually an Observation) or points
				to a resource that is not valid in the
location it is found in (e.g. points to Patient/123 but
				the field supposed to reference an
Organization)
 2015-09-24 14:47:04 -04:00
James Agnew 072c1ece87 Send Accept header on client requests, and allow string responses in 
QuestionnaireResponse validator for questions of type OPENCHOICE
 2015-09-24 13:40:07 -04:00
jamesagnew 70eff0dc7f Improve error message when $meta-add and $meta-delete are called with no meta element in the 
input parameters. Also improve OperationOutcome rendering in narrative generator.
 2015-09-24 08:36:25 -04:00
jamesagnew 835abdfbea Fix compile issues 2015-09-24 07:46:35 -04:00
jamesagnew cdc1519a55 Work on subscriptions 2015-09-24 07:01:04 -04:00
jamesagnew a15ed8e944 Work on subscriptions, and correct an issue with DateRangeParam where comparators get ignored 2015-09-23 08:36:11 -04:00
jamesagnew ef6a9302c0 Fix tests 2015-09-22 22:10:46 -04:00
jamesagnew ec8b3b68f6 Work on subscription 2015-09-22 08:06:23 -04:00
jamesagnew 36d8ed98d2 Test to confirm #222 not an issue 2015-09-21 21:37:50 -04:00
jamesagnew f2118df9b8 FIx #225 - Support and/or in JPA on _id and _language params 2015-09-21 21:29:04 -04:00
jamesagnew 04c2cce13f Start working on JPA subscriptions 2015-09-21 09:08:19 -04:00
jamesagnew 8fee057de3 Bump Spring and Hibernate versions 2015-09-20 10:18:33 -04:00