Commit Graph

2333 Commits

Author SHA1 Message Date
Grahame Grieve f1eeb9640b typo 2024-05-27 23:56:06 +10:00
Grahame Grieve d279468008 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-27 23:00:42 +10:00
Grahame Grieve c4090867ca Try transifex specific files 2024-05-27 23:00:34 +10:00
Grahame Grieve b766cffdb1 v2 tests, support discriminator by position, and don't check type characteristics for unknown types 2024-05-26 07:56:16 -05:00
Lloyd McKenzie a390c9a128 Corrected ObligationsRenderer to handle multiple actors and multiple codes. Also got obligations with elements to render properly (which means knowing whether you're on a table page or definitions page, what tab you're on, and whether the element for the obligation is in-scope for that tab (so you know whether to hyperlink or not). Had to make links on the tables point to definitions because table anchors are not unique. 2024-05-26 06:37:12 -05:00
markiantorno a32e28e4e3 Updating version to: 6.3.11-SNAPSHOT and incrementing test cases dependency. 2024-05-25 23:37:56 +00:00
markiantorno d8781b8b76 Release: v6.3.10
## Validator Changes

* Fix issue validating codes with + in them
* Fix (well, hack) R4 vital signs issue with component units

## WHO I18n Project

* QA on i18n constants - remove spurious entries, add anything missing
* Remove test case for i18n coverage
* Generate properties translation files without blank entries
* Add transifex configuration
* Fix up .po file generation so that POEdit is supported, and remove duplicate constants (#1592)
* Most strings translated to Dutch, unchecked.
* Add utility to infer locale from region code

## Other code changes

* Remove Accept-Charset header
* Fix typos around CODESYSTEM_CONTENT_COMPLETE
***NO_CI***
2024-05-25 22:53:24 +00:00
Grahame Grieve b302f1319b remove test case for i18n coverage 2024-05-25 15:11:58 -05:00
Grahame Grieve fd54cee65b fix issue validating codes with + in them 2024-05-25 15:11:40 -05:00
Grahame Grieve 2a25a04fb6 generate properties translation files without blank entries 2024-05-25 11:56:58 -05:00
Grahame Grieve cf9369a7d0 compile fix 2024-05-25 08:32:11 -05:00
Grahame Grieve 4037e5dc4f QA on i18n constants - remove spurious entries, add anything missing 2024-05-25 08:05:25 -05:00
Grahame Grieve 853b4fd9ca stable baseline 2024-05-25 04:25:47 -05:00
Grahame Grieve 34c8c262bc more i18n development 2024-05-25 03:57:56 -05:00
Grahame Grieve de544a752e Fix up .po file generation so that POEdit is supported, and remove duplicate constants (#1592) 2024-05-24 19:39:37 -05:00
Grahame Grieve e16cf9685c Auto stash before merge of "master" and "origin/master" 2024-05-24 18:35:56 -05:00
Alexander Henket 0369abc485
Update rendering-phrases-nl.po
Most strings translated to Dutch, unchecked.
2024-05-24 14:12:00 -05:00
Grahame Grieve 8d55b787ab update translation source files for POEdit support 2024-05-24 10:35:18 -05:00
Grahame Grieve 09d1c4d31f Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-23 01:08:53 -05:00
Grahame Grieve 396a94cf1f fix typos around CODESYSTEM_CONTENT_COMPLETE 2024-05-23 01:08:46 -05:00
dotasek f1fdd51342 Add utility to infer locale from region code 2024-05-22 18:21:07 -04:00
markiantorno 0d0687f1f1 Updating version to: 6.3.10-SNAPSHOT and incrementing test cases dependency. 2024-05-22 05:52:30 +00:00
markiantorno c47f248fa4 Release: v6.3.9
## Validator Changes

* remove "LOINC 2711-0 Oxygen saturation in Venous blood" from the list in the validator that checks whether an observation is a vital sign

## WHO I18n Project

* fix value set summary line display
* update the source of truth translation files

## Other code changes

* Handle more than one expectation extensions in CapabilityStatement
* Fix NPEs in Liquid renderer
***NO_CI***
2024-05-22 05:02:20 +00:00
Grahame Grieve ad2544fc2a fix value set summary line display 2024-05-21 10:09:18 -05:00
Grahame Grieve e1e9ffbf10 update the source of truth translation files 2024-05-20 16:57:26 -05:00
markiantorno 1f6aaa1db3 Updating version to: 6.3.9-SNAPSHOT and incrementing test cases dependency. 2024-05-20 13:16:27 +00:00
markiantorno 5165942802 Release: v6.3.8
## Validator Changes

* Fix bug processing extension with explicit type slicing
* Fix wrong language code from java locale
* Don't accidently hit other terminology servers for code systems handled natively by tx.fhir.org
* Validate Additional Bindings (provisional - usage context is todo)
* Improved system specific checking of value set filters - particularly LOINC and SNOMED CT, and update LOINC validation to the latest understanding of LOINC filters

## WHO I18n Project

* Add importing translations to native resources
* Finish Migrating text phrases to i18n framework
* Fix bugs with loading translations (#1592)

## Security

* Move all network access to go through ManagedWebAccess
* More security documentation

## Other code changes

* Put jurisdiction in npm package.json
* Add testing ontoserver to test suite
* Fix NPE testing Ontoserver
* fix tx tester calling run ok when a filter is applied and tests fail
* Fix name of preferred when rendering AdditionalBindings
* Add AdditionalBinding version conversion in profiles
* Fix SNOWMED spelling
* Fix rendering of multiple imports in value sets
***NO_CI***
2024-05-20 12:30:29 +00:00
Grahame Grieve a86fe5a2d2 FIx up issues with calling translation on the wrong set of properties (#1592) 2024-05-20 04:38:17 -05:00
Grahame Grieve bf4b029b4b compile fixes 2024-05-19 10:45:04 -05:00
Grahame Grieve 5662ec131f WHO i18n work (#1592) 2024-05-19 09:36:05 -05:00
Grahame Grieve de79e47de6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-19 06:11:17 -05:00
Grahame Grieve f15f9f394e Refactor system specific checking of value set filters 2024-05-18 07:36:30 -05:00
Grahame Grieve 7183397f92
Merge pull request #1622 from hapifhir/2024-05-gg-ManagedWebAccess
introduce ManagedWebAccess
2024-05-18 21:46:03 +10:00
Grahame Grieve bdb6022e2d fix token access 2024-05-18 03:38:52 -05:00
Grahame Grieve 6ba9a11c51 Validate Additional Bindings (provisional - usage context is todo) 2024-05-18 03:24:54 -05:00
Grahame Grieve 4911f4fef8 updates for ManagedWebAccess 2024-05-18 14:58:33 +10:00
MattCordell 7603845721 Fix SNOWMED spellings #1621 2024-05-17 12:15:43 +10:00
Grahame Grieve a510a6d1aa introduce ManagedWebAccess 2024-05-16 13:34:50 +10:00
Grahame Grieve 1e3bc60d6e Fix up translation issues 2024-05-12 23:24:20 +10:00
Grahame Grieve 5ae44c23d5 fix up LOINC validation for value set filters 2024-05-12 22:28:15 +10:00
Grahame Grieve 3f236eb880 fix rendering of multiple imports in value sets 2024-05-12 22:27:54 +10:00
markiantorno 248b8b1ac8 Updating version to: 6.3.8-SNAPSHOT and incrementing test cases dependency. 2024-05-10 05:02:38 +00:00
markiantorno d81fc5d82d Release: v6.3.7
## Validator Changes

* Fix bug where some #refs are not resolved to the root of the resource in FHIRPath slicing evaluation
* Fix bug passing wrong type to tx server when using inferSystem
* Fix bug processing version of CodeSystem.supplements incorrectly
* Don't process wrong parent when processing snapshot of element with profiled type that is not reprofiled
* Fix typo in OID message
* Fix handling value set exclude filters
* Allow code system declared properties to be self-referential

## I18n changes

* More comprehensive internationalization phrase coverage reporting on project page
* Move many rendering phrases into i18n framework

## Rendering Changes

* Fix issue with unknown element rendering fixed value for Attachment
* Fix bug calculating value set expansion size for multiple imports
* Fix bug using wrong message for value sets that are too costly to expand
* Fix extension urls not being linked in tree view
* rendering improvements and remove static use of describeSystem
* Fix NPE rendering profile comparisons
* Fix bug where slicing and grouping gets mixed up rendering profile tree

## Other code changes

* Wrap general exception for IWorkerContext (Catch missed exception from HAPI)
* Shim interfaces and classes to support clinical reasoning project updates.
* Fix duplicate txServer getters and setters
* Use extension class on Exception to force try-catch blocks on checkCodeOnServer calls (#1609)
* rework OID handling for better consistency
* handle time outs doing vsac import (starlink obstructions)
***NO_CI***
2024-05-10 04:18:38 +00:00
Grahame Grieve 5259bf9847 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-10 08:49:11 +10:00
Grahame Grieve 4b32505953
Merge pull request #1614 from Boereck/fix/canonical_split_base_validator
Fix/canonical split base validator
2024-05-09 22:48:30 +00:00
Grahame Grieve 256c494d91 Fix bug using wrong message for value sets that are too costly to expand 2024-05-09 19:15:40 +10:00
dotasek e05660a76c Merge remote-tracking branch 'origin/master' into do-20240506-cr-shims 2024-05-08 09:29:03 -04:00
Grahame Grieve 698ba562ab update test case version 2024-05-08 12:06:47 +10:00
Max Bureck 81f02da5c2 Fix split logic of canonical into url and version in several places
Removed
- org.hl7.fhir.r4b.renderers.DataRenderer#versionFromCanonical
- org.hl7.fhir.r4b.renderers.DataRenderer#systemFromCanonical
- org.hl7.fhir.r5.renderers.DataRenderer#versionFromCanonical
- org.hl7.fhir.r5.renderers.DataRenderer#systemFromCanonical
- org.hl7.fhir.validation.BaseValidator#versionFromCanonical
- org.hl7.fhir.validation.BaseValidator#systemFromCanonical

Replaced all usages of aforementioned methods by the use of
org.hl7.fhir.utilities.CanonicalPair.

Improved CanonicalPair to avoid multiple lookup of the | character. And
added a few convenience methods to the class.

This fixes the issues of #1611 (not replacing all canonical splits in
other places of the code).
2024-05-07 16:46:14 +02:00
dotasek.dev 3317d8bd86 Add shim interfaces and classes for CR project compatibility 2024-05-06 17:03:08 -04:00
Grahame Grieve c24fde0bb6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-05 18:17:33 +10:00
Grahame Grieve 2833d1da62 fix typo in OID message 2024-04-25 22:01:15 +10:00
Grahame Grieve 316161e3a7 i18n for rendering phrases (step 1) #1592 2024-04-25 22:01:04 +10:00
dotasek 315d115cc7
Refactor + add rendering phrases + sort output (#1607) 2024-04-24 14:01:30 -04:00
dotasek.dev dab6150e9a Merge remote-tracking branch 'origin/master' into do-20240327-language-translation-coverage 2024-04-23 11:46:52 -04:00
markiantorno 9ce2c57b8b Updating version to: 6.3.7-SNAPSHOT and incrementing test cases dependency. 2024-04-23 08:51:21 +00:00
markiantorno 46bdec9054 Release: v6.3.6
## Validator Changes

* fix NPE loading resources
* Don't enforce ids on elements when processing CDA
* Send supplements to tx server
* fix bug processing code bindings when value sets are complex (multiple filters)
* fix spelling of heirarchy
* Look up CodeSystem from terminology server
* Don't use tx-registry when manual terminology server is set

## Other code changes

* More work on WHO language support ($1592)
* allow validation message to have count
* render versions in profile links when necessary
* rework OID handling for better OID -> CodeSystem resolution
* fix up vsac importer for changes to client
* don't send xhtml for tx operations
* FHIRPath: Backport the defineVariable code to the R4 and R4B fhirpath implementations
* FHIRPath: Remove the alias/aliasAs custom functions (use standard defineVariable now)
* Bump lombok (#1603)
***NO_CI***
2024-04-23 08:03:57 +00:00
Grahame Grieve 60bf358bfa Look up CodeSystem from terminology server + don't use tx-registry when manual terminology server is set 2024-04-23 08:34:25 +10:00
dotasek.dev b522c1e4d2 Allow creation of i18n coverage csv 2024-04-22 15:45:08 -04:00
dotasek.dev aff1c0d6f6 Merge branch 'master' into do-20240327-language-translation-coverage 2024-04-22 09:30:27 -04:00
Grahame Grieve 2625952ce2 more work on WHO language support ($1592) 2024-04-22 11:17:45 +10:00
Grahame Grieve 74e5f1d493 Don't enforce ids on elements when processing CDA 2024-04-20 23:37:07 +10:00
Grahame Grieve 1c797d64d9 allow validation message to have count 2024-04-20 23:36:25 +10:00
markiantorno ed18ec2cc6 Updating version to: 6.3.6-SNAPSHOT and incrementing test cases dependency. 2024-04-16 22:47:50 +00:00
markiantorno ccf66ece0b Release: v6.3.5
## Validator Changes

* Fix up path management in the validator for resolving references in Bundles
* Add support for defineVariable in FHIRPath
* Fix problem with CDA element having multiple types
* Fix problem with 'is' not working in FHIRPath for CDA types
* Fix issue processing CDA generic type names
* Fix for NPE processing tx server response
* Add support for code system supplements when communicating with tx server

## Other code changes

* OSGI: make sure JUnit 4 and 5 dependencies are optional (#1596) (Also removed duplicate managed versions of JUnit 4.13.2 and mockwebserver 4.11.0)
* Render CapabilityStatement.imports (and instantiates)
* Terminology Service Tests - minor improvements for running in HAPI, add $lookup & $translate support, create R4 clone
* Add support for $translate to terminology client
* More i18n work in rendering context (WHO project)
* Add isServerSide for seeing if code systems are only supported on the server
* Fix R4B loading issue that lead to wrong web paths for R4B resources
* Fix problems rendering Binary files in IGs
* Add support for rendering logical URIs
* Remove path.toFile()

## Security

* Finish moving all local file access to go through ManagedFileAccess

## WHO Internationalization work

* More work on date rendering
***NO_CI***
2024-04-16 22:01:50 +00:00
Grahame Grieve ca783eb036
Merge pull request #1597 from brianpos/BP-defineVariable
Implement the new fhirpath `defineVariable` function
2024-04-16 22:04:40 +10:00
Grahame Grieve f9a11d97f7 more removing Path.toFile() 2024-04-16 19:37:42 +10:00
Grahame Grieve 99f40d18b5 Start removing path.toFile() 2024-04-16 18:17:42 +10:00
Grahame Grieve 0d7c837b85
Merge branch 'master' into 2024-04-gg-lookup 2024-04-16 16:15:37 +10:00
Márk Czotter 59a749a842
build(utilities): make sure JUnit 4 and 5 dependencies are optional (#1596)
Also removed duplicate managed versions of JUnit 4.13.2 and
mockwebserver 4.11.0.

Fixes #1561
2024-04-15 20:24:03 -04:00
Brian Postlethwaite 7b7af6087e base components of implementing the defineVariable fhirpath function 2024-04-12 14:13:53 +10:00
Grahame Grieve 8ce99140aa More i18n work (#1592) 2024-04-10 08:18:58 +10:00
Grahame Grieve a111989bb4 i18n work in rendering context (WIP) (#1592) 2024-04-09 05:20:41 +10:00
markiantorno 1f3d2838d9 Updating version to: 6.3.5-SNAPSHOT and incrementing test cases dependency. 2024-04-04 01:47:30 +00:00
markiantorno 45e8d86478 Release: v6.3.4
## Validator Changes

* Validate fixed/pattern values are not changed in derived profiles
* Fix NPE validating some profiles
* FHIRPath validation: consider sub-extensions when checking extension($) use
* Fix validation of concept maps containing SCT
* Preserve message id from terminology service so editors can use it to remove hints and warnings

## Other code changes

* Fix ConceptMap.group.target conversion from R3 to R5
* Fix NPE in list renderer
* fix bug showing 'required' instead of 'current' rendering additional bindings
* Fix bad references generating narratives in bundles
* Fix bug showing extension binding twice
* Various improvements to structure map validation to support cross-version mappings
* Add rendering for UsageContext and ContactDetail
* Fix broken link in xver IG for R2
* Fix bug rendering resources in Parameters resource
* Not-pretty xhtml gets line breaks before block tags to keep line length down (work around a jekyll issue)
* Improved ConceptMap rendering for cross-version IG
* Handle xhtml:div type for old FHIR version
* FML: strip '-' from rules names when parsing
* Update FML parsers to accept R5 metadata in R4 FML format
* Break out helper classes for Terminology Service Tester

## Security

* Add start of security notes
* Start moving file access to all go through ManagedFileAccess

## WHO Internationalization work:

* Add library to parse IETF Language definitions
* Move message translations to .po files as the master source & write convertor
* Much work making rendering i18n-able
* i18n for Patient renderer
* Refactor language handling in R5 renderers
***NO_CI***
2024-04-04 00:55:36 +00:00
Grahame Grieve 003abc13d1
Merge pull request #1577 from hapifhir/do-20240319-languages-dat
Loader for rfc5646 languages file
2024-04-04 08:23:24 +11:00
Grahame Grieve 364a2aeec4 not-pretty xhtml gets line breaks before block tags to keep line length down (work around a jekyll issue) 2024-04-03 20:14:05 +11:00
Grahame Grieve 2c6f1b6a59 start moving file access to all go through ManagedFileAccess 2024-04-03 20:11:16 +11:00
Grahame Grieve d4d356731e update PO generator for plurals 2024-03-29 20:38:54 +11:00
Grahame Grieve dfcd5ed161 rebuild po files to get plurals correct 2024-03-28 17:44:53 +11:00
dotasek.dev 56896ba5d1 Add coverage test to output missing translations + summary 2024-03-27 17:28:10 -04:00
Grahame Grieve 6ca39e14db fix broken link in xver IG for R2 2024-03-27 21:14:26 +11:00
Grahame Grieve c237a401c1 move master source for translations to .po files for ease of maintenance 2024-03-27 20:51:54 +11:00
Grahame Grieve 211e4efb44 validate fixed/pattern values in derived profiles 2024-03-26 08:43:35 +11:00
Grahame Grieve 3d57cec0f1 fix validation of concept maps containing SCT 2024-03-26 06:27:42 +11:00
Grahame Grieve a95b867054 more rendering i18n work 2024-03-26 06:27:25 +11:00
Grahame Grieve a4055877c4 more work on multi-language rendering, and add test id to error message on comparison 2024-03-25 10:06:00 +11:00
Grahame Grieve c633eafef6 more i18n refactoring 2024-03-24 18:05:06 +11:00
Grahame Grieve 4a2e2087bb bug fixes 2024-03-23 20:09:17 +11:00
Grahame Grieve e43fb83693 more refactoring rendering for i18n 2024-03-23 18:29:14 +11:00
Grahame Grieve 02b6e80b6d refactor language handling in R5 renderers 2024-03-22 22:49:31 +11:00
dotasek 0d702ae567 Explicit charset 2024-03-20 14:07:27 -04:00
dotasek 90947c9f15 Add options for partial loading 2024-03-20 13:39:12 -04:00
dotasek.dev 77203326db Refactor 2024-03-20 11:37:54 -04:00
dotasek.dev d331c3a3e3 Increase test coverage. 2024-03-20 10:34:48 -04:00
dotasek.dev 65ecbea430 Merge remote-tracking branch 'origin/master' into do-20240319-languages-dat 2024-03-20 10:34:17 -04:00
markiantorno 0cebf9af9f Updating version to: 6.3.4-SNAPSHOT and incrementing test cases dependency. 2024-03-20 13:31:17 +00:00
markiantorno ec51399045 Release: v6.3.3
## Validator Changes

* Fix grammar in validation messages
* Fix NPE in validator for SIDs
* Duplicate designations in a code system is a warning, not an error
* Fix value set validation to validate codes in example code systems

## Other code changes

* Improved multi-language support for IG development (LanguageUtils)
***NO_CI***
2024-03-20 12:38:29 +00:00
Grahame Grieve 9a66c1968e more work on language utilities 2024-03-20 22:44:13 +11:00
Grahame Grieve 61b018d033 fix grammar in validation messages 2024-03-20 21:00:33 +11:00
Grahame Grieve 8f2f414c78 Fix value set validation to validate codes in example code systems 2024-03-20 20:59:41 +11:00
Grahame Grieve 99ea673b91 Improved language support for IG development 2024-03-20 20:39:07 +11:00
dotasek.dev 38e9aea8ac Basic lang file loading test and initial implementation 2024-03-19 17:50:20 -04:00
markiantorno b2e3c261e4 Updating version to: 6.3.3-SNAPSHOT and incrementing test cases dependency. 2024-03-18 15:09:50 +00:00
markiantorno 5b5a0a2cdf Release: v6.3.2
## Validator Changes

* CodeSystem property validation improvements
* More valueset validation improvements after real world testing
* Fix processing of NotSelectable filters using in | not-in
* Fix wrong collection type checking FHIRPath subsetOf parameter type

## Other code changes

* Fix rendering of contained resources in Kindling
* Put jurisdiction in NPM package file
* Rendering improvements for xver IG
* More xver support for concept maps
* Fix NPE in ContextUtilities (kindling)
* Add OID Assigner utility
***NO_CI***
2024-03-18 14:24:12 +00:00
Grahame Grieve 30545d31c1 CodeSystem property validation improvements 2024-03-18 18:09:56 +11:00
Grahame Grieve e39bbba7ef More valueset validation improvements after real world testing 2024-03-14 16:48:39 +11:00
markiantorno da3bb9e353 Updating version to: 6.3.2-SNAPSHOT and incrementing test cases dependency. 2024-03-10 21:41:17 +00:00
markiantorno 072be957d4 Release: v6.3.1
## Validator Changes

* Add validation for CodeSystem Properties and ValueSet filters
* More validation for Code Systems: contained code systems, supplement cross checks
* Add more validation around ValueSet.compose.include.system - must be a proper URL, and not a direct reference to a supplement
* HL7: Don't require HL7 publishing status on contained resources
* Don't walk into nested bundles when validating links in bundles
* fix up implementation of notSelectable in value set filters
* Add check for multiple version matches for a versionless canonical reference

## Other code changes

* Fix narrative generator generating duplicate anchors (prefix 'hc')
* exclude .DS_Store from generated zip files
* Add cross-version support extension
* Add ConceptMap utilities in support of cross-version module
***NO_CI***
2024-03-10 20:52:29 +00:00
Grahame Grieve 27bf474d7e
Merge pull request #1572 from hapifhir/2024-03-gg-tx-improvements
2024 03 gg tx improvements
2024-03-11 06:10:45 +11:00
Grahame Grieve 9e8a010c13 ValueSetValidation improvements 2024-03-11 00:19:16 +11:00
Grahame Grieve 33a1814d4e CodeSystem validation - properties and designations 2024-03-08 22:32:55 +11:00
Grahame Grieve 045718d582 Fix narrative generator generating duplicate anchors (prefix 'hc') 2024-03-08 22:31:25 +11:00
Grahame Grieve 635ac6f109 exclude .DS_Store from generated zip files 2024-03-08 22:30:07 +11:00
Grahame Grieve 19bd64f81a more validation for Code Systems (contained code systems, supplement cross check, HL7 publishing status) 2024-03-07 13:48:13 +11:00
dotasek.dev dd9dd6b64a Remove unused import breaking the maven build 2024-03-06 14:46:40 -05:00
Grahame Grieve 0f08bb4e49 Add more validation around ValueSet.compose.include.system - must be a proper URL, and not a reference to a supplement 2024-03-06 13:29:35 +11:00
Grahame Grieve 7ba1511748 Fix bug where some XHTML elements wrongly serialised concisely 2024-03-01 16:41:32 +11:00
Grahame Grieve 7fb2b1ea00 fix bug in Publisher where examples with profiles aren't properly interpreted as examples in R5 2024-03-01 16:40:24 +11:00
markiantorno 48023c0ba4 Updating version to: 6.3.1-SNAPSHOT and incrementing test cases dependency. 2024-02-28 05:56:31 +00:00
markiantorno b44c34c7e2 Release: v6.3.0
## Validator Changes

* Fix significant bug where validator gets internal child lists incorrect and doesn't do complete validation when switching between validating profiles and resources directly
* Performance improvement for validator parsing - thanks Brian Postlethwaite
* Fix Crash on slicing a sliced element #862
* Fix ig loading from direct URL (#1559)
* Fix bug copying constraints into Bundle.entry.resource profiles
* Fix bug loading R5 extensions with imported value sets
* Replace dom-3 with custom java code, and check xhtml references to contained content
* Improve concept map code validation
* Update observation validator for committee decision not to enforce Blood Pressure profile for Mean Blood Pressure
* Validate value set internal codeSystem references
* Split value set validation into 10k batches for very large extensional value sets
* Hack fix for opd-3
* Fix bug where using ontoserver when not appropriate
* Fix issues with inferSystem
* Don't require HL7 committee for contained resources in HL7 namespace
* Fix where validator was ignoring minimum cardinality for XML attributes (especially in CDA)
* Improved ConceptMap validation
* Updated IG versions used for -cda and -ccda CLI validation options.
* Change validator so that it marks value properties in primitive data types as illegal

## Other code changes

* Fix code system rendering for uri properties
* Fix broken links Bundle and Profile rendering
* Take copy of code when doing local validation
* WIP: major refactor of cross version analysis
* Add support for subsumes in tx client
* Don't generate snapshots when scanning structure definitions for resource names
* Work on ConceptMap infrastructure for cross-version analysis
* Fix bug where not rendering ConceptMap relationships
* Fix wrong URLs rendering Profiles and Questionnaires
* Fix bug using wrong version constant for R3
* Updates for R5 StructureMap syntax
* Support for case sensitive Code system tests
* Add TurtleGeneratorTests for R5
* Introduce new validator cliContext option disableDefaultResourceFetcher (#1526)
* Render contained resources when rendering Patient resources
* Fix bug in FML Parser
***NO_CI***
2024-02-28 05:04:13 +00:00
Grahame Grieve db5605a5ab fix compile problem 2024-02-28 15:30:12 +11:00
Grahame Grieve da56e4296b Change validator so that it marks value properties in primitive data types as illegal 2024-02-28 12:22:33 +11:00
Grahame Grieve eb770f830a fix parsing bugs in StructureMap parser 2024-02-27 00:14:11 +11:00
Grahame Grieve 1d4898eee6 Support for case sensitive Code system tests 2024-02-25 19:22:25 +11:00
Grahame Grieve c05ad6cb2c fix bug using wrong version constant for R3 2024-02-25 19:21:58 +11:00
Grahame Grieve 13342f09a3 more XHTML fluent routines 2024-02-25 19:21:14 +11:00
Grahame Grieve d128c2d3fc rebuild tx cache 2024-02-12 16:21:36 +11:00
Grahame Grieve 2628010dff Fix code system rendering for uri properties 2024-02-10 23:10:31 +11:00
Grahame Grieve 3e642e8bd8 validate value set internal codeSystem references 2024-02-10 23:04:56 +11:00
Grahame Grieve 20bf70ed68 fix bug loading R5 extensions with imported value sets 2024-02-10 22:51:32 +11:00
markiantorno 3a1946e37d Updating version to: 6.2.16-SNAPSHOT and incrementing test cases dependency. 2024-01-30 11:13:01 +00:00
markiantorno 0bb2010409 Release: v6.2.15
## Validator Changes

* Fix bug in deciding whether a ValueSet is supported by the server
* Rework server decision making when multiple code systems being used
* Fix file type inference in ValidationService for unknown file types

## Other code changes

* Kindling related fixes for terminology stability
* Fix parameter type for system-version
* Fix mini-terminology server bugs around unknown systems
* Improvements to Identifier rendering
***NO_CI***
2024-01-30 10:29:12 +00:00
Grahame Grieve 975f4fd28b rework server decision making when multiple code systems being used 2024-01-30 19:05:20 +11:00
markiantorno f492c2114a Updating version to: 6.2.15-SNAPSHOT and incrementing test cases dependency. 2024-01-25 17:19:04 +00:00
markiantorno 485bb2a9a7 Release: v6.2.14
## Validator Changes

* no changes

## Other code changes

* Fix text creation on wrong xhtml node type
***NO_CI***
2024-01-25 16:34:27 +00:00
markiantorno 4ffe900fb3 Updating version to: 6.2.14-SNAPSHOT and incrementing test cases dependency. 2024-01-19 12:52:04 +00:00
markiantorno bebd1f31c1 Release: v6.2.13
## Validator Changes

* no changes

## Other code changes

* Fix for handling large expansions correctly
***NO_CI***
2024-01-19 12:17:24 +00:00
markiantorno a85b5e74cd Updating version to: 6.2.13-SNAPSHOT and incrementing test cases dependency. 2024-01-19 03:37:05 +00:00
markiantorno 8ff31256fe Release: v6.2.12
## Validator Changes

* Handle terminology server errors better

## Other code changes

* Fix expansion related bugs and adjust tests accordingly
* Update test framework for changes to expansion functionality
* Update presentation of fixed and pattern values in profile views
* Handle toString for XhtmlNode when nodeType == null
***NO_CI***
2024-01-19 02:47:02 +00:00
Grahame Grieve 8a3f1037b3
Merge pull request #1547 from hapifhir/do-20240118-fix-null-ex-on-xhtml-tostring
Handle toString for XhtmlNode when nodeType == null
2024-01-19 12:52:57 +11:00
Grahame Grieve f1d81856a5 update presentation of fixed and pattern values in profile views 2024-01-19 10:40:03 +11:00
Grahame Grieve bf57789467 Fix expansion related bugs and adjust tests accordingly 2024-01-19 10:39:29 +11:00
dotasek 8ab4340014 Handle toString for XhtmlNode when nodeType == null 2024-01-18 14:17:54 -05:00
markiantorno 2156a44395 Updating version to: 6.2.12-SNAPSHOT and incrementing test cases dependency. 2024-01-18 03:15:19 +00:00
markiantorno 4ca3400a86 Release: v6.2.11
## Validator Changes

* Remove debugging code hiding error from server

## Other code changes

* fix broken links rendering questionnaires
* render target profiles on operation definition parameters
* fix up cvx importer
***NO_CI***
2024-01-18 02:26:19 +00:00
Grahame Grieve 42e3b9a948 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-01-18 11:46:49 +11:00
Grahame Grieve b581e36cb5 add error message for tx.fhir.org 2024-01-18 11:42:27 +11:00
markiantorno 0c431880f7 Updating version to: 6.2.11-SNAPSHOT and incrementing test cases dependency. 2024-01-17 16:48:24 +00:00
markiantorno 9c15aff0f3 Release: v6.2.10
## Validator Changes

* Fix issues with multiple terminology servers (should be live soon)
* Rework terminology system & cache to support new terminology server ecosystem
* Handle value set with exclusion filters when expanding
* Fix to consistent error messages when value sets can't be resolved

## Other code changes

* Fix bug processing empty structure maps
* Performance improvements to common IO routines, with test cases - see https://blog.qligier.ch/posts/2024-improving-perf-ig-publisher-io/ (thanks to Quentin Ligier)
***NO_CI***
2024-01-17 15:53:34 +00:00
Grahame Grieve 61b2b5e481 clarify wrong display message 2024-01-18 00:15:22 +11:00
Grahame Grieve a3ffe348fb add semver sorter 2024-01-17 22:32:29 +11:00
Grahame Grieve 8613cd3944 rework terminology cache to manage multiple terminology servers 2024-01-17 20:44:37 +11:00
dotasek 602a113363 Fix version bump 2024-01-16 16:26:25 -05:00
Grahame Grieve ff33d9cf71 add TextFile test cases 2024-01-16 19:14:08 +11:00
Grahame Grieve 516b932717 include qligier's performance improvements 2024-01-16 16:18:05 +11:00
Grahame Grieve de0024ceec Add support for fetching unknown value sets from tx.fhir.org/ecosystem 2024-01-16 11:45:13 +11:00
Grahame Grieve 56fc442db4 revise BOM handling for stringToX routines 2024-01-15 17:29:42 +11:00
Grahame Grieve 449821a4b4 update tests to handle missing value sets properly 2024-01-15 15:04:47 +11:00
Grahame Grieve 5b0f154620 tidy up fixmes 2024-01-12 10:10:18 +11:00
markiantorno 7786596091 Updating version to: 6.2.10-SNAPSHOT and incrementing test cases dependency. 2024-01-11 21:54:37 +00:00
markiantorno 70ba6654fe Release: v6.2.9
## Validator Changes

* no changes

## Other code changes

* Test release for changes to pipeline
***NO_CI***
2024-01-11 21:10:16 +00:00
markiantorno e2ba911f4e Updating version to: 6.2.9-SNAPSHOT and incrementing test cases dependency. 2024-01-10 21:29:35 +00:00
Grahame Grieve 97ea3903b0 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-01-11 08:20:12 +11:00
Grahame Grieve 00842e64e5 Suppress date errors when searching for packages 2024-01-11 08:20:00 +11:00
markiantorno a5e0b5a1dd Release: v6.2.8
## Validator Changes

* Major rework of tx and validation test cases associated with reworking terminology / validator interface and ongoing testing + reconciliation with Ontoserver
major upgrade to validation - use terminology server to perform more logic, and standardise interface based on agreements with Vocab & Ontoserver
* Improve slicing error message
* Add warning to user when referencing an extension that doesn't exist in FHIRPath
* Fix bugs in FHIRPath implementation of split() and join()
* Fix bug handling null objects in JSON (R5)
* Fix for missing search parameter definition in R4
* fix bug handling XML name extension
* Fix FHIRPath validation errors around use of %resource and %rootResource
* Correct validator enforcement of minValue for decimal and integer (#1538)

## Other code changes

* Properly populate property definitions in expansions
* Add CVX Importer
* R6 release support
* IPS tool development
* Improved errors publishing IGs
* Refactor Context to support multiple terminology services
* change type of error when value set circularity found
* Track generated side files when rendering resources
* Support for extended Unicode characters in XHTML / XML / JSON / Turtle
***NO_CI***
2024-01-10 21:03:47 +00:00
Grahame Grieve 9b9aa51e36 update headers on client to add ;fhirVersion=X 2024-01-10 15:48:47 +11:00
Grahame Grieve 33f43da3d7 more unicode work 2024-01-10 10:14:43 +11:00
Grahame Grieve eb95ed00b6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-01-10 09:06:36 +11:00
Grahame Grieve 096033c002
Merge pull request #1532 from adrianclay/handle-multi-character-html-entities
Add support to XhtmlParser to handle 2 character HTML Entities
2024-01-10 09:06:02 +11:00
Grahame Grieve 7c6d5fa688 extended unicode support 2024-01-10 08:00:32 +11:00
Grahame Grieve 4160d02bd1 change type of error when value set circularity found 2024-01-09 12:00:00 +11:00
Grahame Grieve d74b0e2b4a Refactor Context to support multiple terminology services 2024-01-08 21:07:08 +11:00
Adrian Clay 287949308e
Merge branch 'hapifhir:master' into handle-multi-character-html-entities 2024-01-06 12:51:22 +00:00
Grahame Grieve 85435f38a2 Improve slicing error message 2024-01-05 13:20:25 +11:00
Grahame Grieve c0f61b585f Revert "Improve message when slice is missing"
This reverts commit cadc326d26.
2024-01-05 12:41:35 +11:00
Grahame Grieve cadc326d26 Improve message when slice is missing 2024-01-05 12:39:53 +11:00
Grahame Grieve cf72798e9f Properly populate property definitions in expansions 2024-01-05 12:39:32 +11:00
Adrian Clay b8e8e771f0 Add support to XhtmlParser to handle 2 character HTML Entities
Previously, the parser would mangle any HTML entity greater than
0xFFFF
2024-01-04 16:29:05 +00:00
Grahame Grieve 2b978b4d4d more terminology qa updates 2024-01-04 14:29:19 +11:00
Grahame Grieve 92fca7a947 more tx validation improvements 2024-01-03 22:19:05 +11:00
Grahame Grieve 84659e501c fix split implementation 2024-01-02 09:40:32 +11:00
Grahame Grieve 159e189520 Add support for tracking source server of issue 2023-12-31 08:34:55 +11:00
Grahame Grieve d429f48760 major upgrade to validation - use terminology server to perform more logic, and standardise interface based on agreements with Vocab & Ontoserver 2023-12-30 23:02:19 +11:00
Grahame Grieve 3ed816209d update terminology server for test reconciliation with tx.fhir.org 2023-12-25 00:28:39 +11:00
Grahame Grieve 70af787438 IPS development 2023-12-22 21:23:34 +11:00
Grahame Grieve 74893e42e7 Improved errors publishing IGs 2023-12-22 21:23:17 +11:00
Grahame Grieve 073311bbb6 Various fixes to terminology service after reconciliation with Michael Lawley 2023-12-22 21:20:10 +11:00
markiantorno d4d7600635 Updating version to: 6.2.8-SNAPSHOT and incrementing test cases dependency. 2023-12-15 13:00:23 +00:00
markiantorno 6c78cc3e48 Release: v6.2.7
## Validator Changes

* Fix up validation of fragment and example value sets
* Improve handling of terminology messages + handling of example and fragment code systems
* Add support for logical_container extension (for CDA constraint validation)
* Clean up handling of xml_name
* Check for xver extension canonical urls when validating uri elements
* Upgrade xver to latest R5 definitions

## Other code changes

* Fix string index error in xver manager
* Fix rendering of type for previous versions
***NO_CI***
2023-12-15 10:50:47 +00:00
Grahame Grieve 09c2c8f81b Improve handling of terminology error and warning messages + handling of example and fragment code systems 2023-12-15 04:21:50 -05:00
Grahame Grieve 45b35c52d5 upgrade xver to latest R5 definitions 2023-12-14 07:20:45 -05:00
markiantorno ceaa131d81 Updating version to: 6.2.7-SNAPSHOT and incrementing test cases dependency. 2023-12-13 19:07:52 +00:00
markiantorno b5902aac98 Release: v6.2.6
## Validator Changes

* Fix bug where validator doesn't actually validate web sourced input
* Fix narrative link validation and add id/idref validation
* Remove fhir-test-cases from Validator CLI JAR (#1497) (reduce size)
* Fix to CDA xsi:type validation per SD decision
* Apply regex pattern to literal format if defined
* Improvements to vital signs related messages
* Fix R4 con-3 FHIRPath expression
* Fix bug loading packages with partially specified version that doesn't exist
* Fix for occasional missing warnings around bundle link validation
* Fix using wrong resource type when validating constraints in data type definitions during R6 build
* Fix NPE in validator processing CCDA examples
* Fix problem with version dependencies when loading npm packages directly as files
* Fix for SearchParameter validation using custom resource types

## Other code changes

* Bump commonmark version
* fix Utilities display of time periods (fixed width hour:min)
* Fix stated path for error when code not in value set
* Fix rendering of trigger definition using tables inside paragraphs
* Update VSAC importer to fix timeout issues
* Refactor FHIRPath java package
* Fix problem with profiled resources being called examples in IG publisher
* Remove dependencies for unused UI experiment (#1465)
* Remove AU connectathon
* Include hamcrest dependency
* Fix breaking ValidationEngineTests
* Give kinder error message for missing param
* Fix commonmark group and bump version (#1500)
* Remove dep used for local testing
* Bump jackson & logback versions
* Fix StringType element properties not being copied in various Address, HumanName convertors
* Handle all initial value types when rendering Questionnaires
* Ensure Address.line[] element data is copied over
* Write locking on FilesystemPackageCacheManager
* Fix problems setting owning committee consistently
* Utility classes for fule system package cache pre-loading
***NO_CI***
2023-12-13 18:41:20 +00:00
dotasek 0afea8dc1d
CLI Task to preload package cache (#1508)
* WIP start building preload task

* Slightly refactor exceptions

* sleep between each query

* WIP - FilesystemPackageCacheManager refactor

* Finish refactor

* Customize PackageVisitor

* Remove unused code

* Remove unused code 2

* Add debug logging for failing test

* Point withCacheFolder if to correct param

* Remove console chatter

* Rename to FilesystemPackageCacheManager.Builder

* Move logic to PackageCacheDownloader for re-use in other projects

* Fix spacing
2023-12-13 11:27:15 -05:00
dotasek 27e0fbad16 Merge remote-tracking branch 'origin/master' into do-20231127-package-cache-threadsafe 2023-12-11 09:56:39 -05:00
Grahame Grieve de7dc3023d fix validation issues on HL7 publisher 2023-12-11 16:56:27 +11:00
Grahame Grieve 4b1488438e missed files 2023-12-11 14:10:26 +11:00
Grahame Grieve f88f4e492e fix bug loading packages with no specified version that don't exist 2023-12-11 14:08:28 +11:00
Grahame Grieve e697ec1c4c check extensions with fhirpath context 2023-12-05 16:56:44 +11:00