Commit Graph

1929 Commits

Author SHA1 Message Date
frankjtao 73f12744ae #963 Improved performance for tag loading 2018-05-31 21:30:46 -04:00
jamesagnew abcf7852b1 Tests pasing locally 2018-05-31 09:10:34 -04:00
Romanow a336f33b4b Update Spring Data 1.11.6.RELEASE to 2.0.7.RELEASE 2018-05-31 14:42:15 +02:00
James Agnew 7e0584af2f Merge branch 'java9' of github.com:jamesagnew/hapi-fhir into java9 2018-05-30 21:59:51 -04:00
James Agnew 2f07066c59 Test fixes 2018-05-30 21:59:41 -04:00
James Agnew c2afd9728d More test fixes 2018-05-30 21:57:17 -04:00
jamesagnew 432bc66208 Merge branch 'java9' of github.com:jamesagnew/hapi-fhir into java9 2018-05-30 21:24:01 -04:00
James Agnew bb5d4110a2 Test fixes 2018-05-30 21:23:20 -04:00
jamesagnew 2684e2b030 Build fixes 2018-05-30 16:17:36 -04:00
jamesagnew d127a89047 Some test fixes 2018-05-30 11:01:43 -04:00
jamesagnew 833a46d07e Work on test compilation 2018-05-30 08:27:09 -04:00
jamesagnew 5a96482860 More work o JDK9 tests 2018-05-30 08:04:01 -04:00
James Agnew a52805e504 Work on JDK9 support 2018-05-30 05:45:08 -04:00
James Agnew 7951d883d0 Merge branch 'master' into java9 2018-05-29 08:43:21 -04:00
patrick-werner 83c8718c2a Merge branch 'v3.4.4' into documentOperation 2018-05-29 10:06:30 +02:00
Frank Tao 404d37cedc Fixed #963 : load history table once instead of one by one in the loop
in the SearchBuilder class.
2018-05-28 22:45:45 -04:00
Diederik Muylwyk 0e2c57fa60 Bumping version. 2018-05-28 17:44:38 -04:00
patrick-werner 8872fc94c5 Merge remote-tracking branch 'origin/master' into documentOperation
# Conflicts:
#	hapi-tinder-plugin/src/main/resources/vm/jpa_resource_provider.vm
#	hapi-tinder-plugin/src/main/resources/vm/jpa_spring_beans.vm
#	hapi-tinder-plugin/src/main/resources/vm/jpa_spring_beans_java.vm
2018-05-28 17:05:50 +02:00
Diederik Muylwyk 2871920734 Preparing release. 2018-05-28 10:45:47 -04:00
James Agnew a7eac969d9 Site enhancements for release 2018-05-28 08:53:36 -04:00
jamesagnew 67f21426cb Disable content header on response for non-create operations 2018-05-25 07:28:01 -04:00
jamesagnew 49aaa01db8 Fix compile issues 2018-05-23 17:42:48 -04:00
James Agnew 850aa99ddb Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-23 16:28:35 -04:00
James Agnew ed6609e414 One more test fix 2018-05-23 16:28:13 -04:00
jamesagnew b146a80502 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-23 16:09:34 -04:00
jamesagnew 92dc258c6e Update license headers 2018-05-23 16:09:23 -04:00
James Agnew ba8827091a Reindexing fixes 2018-05-23 16:07:48 -04:00
James Agnew a3687e446e Correctly handle missing search params with new indexing infrastructure 2018-05-23 11:42:38 -04:00
James Agnew 0c5c347db7 FIx broken reindex process 2018-05-23 10:48:07 -04:00
James Agnew 2f2900e837 Improve indexing on JPA server in anticipation of a new indexing
strategy in HAPI FHIR 3.5.0
2018-05-23 08:09:57 -04:00
jamesagnew e8139192e0 FIx test issues 2018-05-21 13:07:11 -04:00
James Agnew c588e01a4d Handle invalid paths in Consent resource 2018-05-16 21:45:23 -04:00
jamesagnew 4d62120a18 Fix issues reported by errorprone 2018-05-15 08:44:15 -04:00
jamesagnew f9946fee61 Fixes to get the build passing once more 2018-05-15 07:34:44 -04:00
James Agnew a3ff08d9ec
Replace phloc with ph for #775 (#930)
* Replace phloc with ph

* Enable schematron tests

* Make HAPI-FHIR ph-schematron on OSGI

* Work on getting tests passing

* Another test fix

* Fix up transaction handling for DSTU2

* Add changelog

* Avoid double transaction

* Dont use readonly

* One more test fix

* Update to snapshow build

* Resolve a circular dependency

* Try to fix tests

* Solve recurring NPE in DSTU2 tests

* Fix one more test

* Test fix

* More test threading fixes

* One more attempt to get tests passing

* Refactoring for tests

* Refactoring for tests
2018-05-14 17:38:40 -04:00
jamesagnew ccb859fdbe FIxes to get the synced build working 2018-05-13 08:08:34 -04:00
jamesagnew 150f27a9ca Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-12 19:40:31 -04:00
jamesagnew 3d762b984b Sync to R4 definitions 2018-05-12 19:35:42 -04:00
James Agnew 9d24e8b040 Use HTTP 409 for conflict when two threds update the same resource 2018-05-11 17:41:07 -04:00
James Agnew f1ba0016b2 Improve the error message thrown by JPA server 2018-05-11 17:03:48 -04:00
James Agnew b17eebd8d2 Squashed commit of the following:
commit 2be11651c2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:50:53 2018 -0400

    Update changelog

commit b3bb5f9052
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:19:28 2018 -0400

    Parameter updates

commit f6b1082ba4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 07:24:30 2018 -0400

    More test fixes

commit 81a69c265f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:26:48 2018 -0400

    Fix compile error

commit 935938e92c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:25:18 2018 -0400

    Another test fix

commit 43568a1f8d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:18:06 2018 -0400

    Fix compile error

commit e95894e643
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:13:50 2018 -0400

    More work on tests

commit 9393fb8f4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 05:36:27 2018 -0400

    One more fix

commit 437f5051e4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 21:32:10 2018 -0400

    Work on validator

commit 20c51add4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 19:34:10 2018 -0400

    Validator fix

commit 7bf2b0a0e9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 18:44:04 2018 -0400

    Fix test

commit adc73e75c9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 17:22:34 2018 -0400

    Merge validator
2018-05-10 11:53:32 -04:00
Diederik Muylwyk d97fb8f5cf
709 the conceptmap operation called translate needs to be implemented (#923)
The ConceptMap operation $translate has been implemented.
2018-05-10 10:52:56 -04:00
patrick-werner cbd3ddbbd7 $document operation on Composition working (1st draft) 2018-05-10 15:05:06 +02:00
James Agnew a0c40cf98a Move a few more constants around 2018-05-05 12:21:56 -04:00
James Agnew 5c505b7cd7 Refactor operations to use constants for their names 2018-05-05 08:27:45 -04:00
James Agnew 7688be1231 Work on getting java9 building 2018-05-03 18:34:29 -04:00
jamesagnew f66e6d055e Add license header 2018-05-02 14:54:11 -04:00
James Agnew bb25a97e66 FIx up logging rule 2018-05-02 14:34:55 -04:00
James Agnew 220cb1716f Add a new rule 2018-05-02 14:28:01 -04:00
James Agnew 45360d80cb Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-02 14:19:28 -04:00
James Agnew 87666a1622 Use a direct subclass for the resource cache 2018-05-02 14:18:53 -04:00
jamesagnew 34d9646d8b Headers 2018-05-02 06:18:16 -04:00
James Agnew 994f2992d1 Return codesystem ID in upload terminology response 2018-05-01 07:56:02 -04:00
James Agnew e558132dba Restore deleted file 2018-04-30 16:48:39 -04:00
jamesagnew 0af8fbc5d3 Make expunge globally disabled by default 2018-04-29 07:47:26 -04:00
jamesagnew 770246583d Restore default constructor 2018-04-28 15:04:39 -04:00
jamesagnew 5bd191d192 FIx some failing tests 2018-04-28 13:21:48 -04:00
James Agnew 593a705365 Performance enhancements on the CapabilityStatement generator for JPA
server
2018-04-28 11:06:42 -04:00
jamesagnew e299b062a6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-24 19:14:56 -04:00
jamesagnew f1db751d1e Update headers 2018-04-24 19:14:33 -04:00
James Agnew 09b1f547d0 Add expunge 2018-04-24 15:11:00 -04:00
James Agnew 07e7af746f Work on expunge operation 2018-04-22 22:03:23 -04:00
James Agnew 591539cf13 Add expunge method 2018-04-22 18:34:56 -04:00
jamesagnew 51216c0010 Start work on expunge operation 2018-04-22 15:29:57 -04:00
James Agnew 8ec5ca69bb Add another translation type 2018-04-21 15:25:23 -04:00
James Agnew 488890155c Loinc uploader updates 2018-04-21 14:32:17 -04:00
James Agnew 1ff50cb0db Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-17 18:26:39 -04:00
James Agnew 162069776a Correctly handle encoding contained resources where some have user
assigned IDs and some do not
2018-04-17 18:26:06 -04:00
jamesagnew aecb315886 Loinc updates 2018-04-15 18:34:56 -04:00
jamesagnew 13242d77ed Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-15 17:43:16 -04:00
jamesagnew 0c955f7f27 More loinc updates 2018-04-15 17:20:36 -04:00
James Agnew 8bfd7913c8 More work on loinc loader 2018-04-15 17:19:34 -04:00
patrick-werner 26e9211db8 Merge tag 'v3.3.0' into documentOperation 2018-04-11 15:56:57 +02:00
James Agnew b3a9ea263f Fixes to loinc mapping 2018-04-10 21:19:00 -04:00
James Agnew 260aa9e9fa Improve the loinc uploader 2018-04-06 17:35:19 -04:00
jamesagnew 26710f7608 Increase column lengths 2018-04-06 17:29:03 -04:00
James Agnew f013448917 More work on updating term services 2018-04-06 17:06:34 -04:00
James Agnew 7d6582fe73 More updates to loinc uploading 2018-04-06 16:41:28 -04:00
James Agnew 22b8e05b1f Add some logging 2018-04-06 16:14:59 -04:00
James Agnew 0f269a1ab1 Correctly save deferred concepts 2018-04-06 14:23:41 -04:00
James Agnew 3eab3c5fab More mapping for loinc RADS 2018-04-06 12:23:10 -04:00
James Agnew 2f4bcfe5d6 Understand equal mappings 2018-04-06 11:25:46 -04:00
jamesagnew 7334800684 Better logging 2018-04-06 09:50:41 -04:00
James Agnew d624556e18 Some updates to the loinc mapper 2018-04-06 09:50:18 -04:00
James Agnew f0f93d2330 Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-06 09:13:08 -04:00
James Agnew 832558b411 Updates to handler 2018-04-06 09:12:52 -04:00
jamesagnew 2c818d5b4a Update handler names 2018-04-06 09:12:22 -04:00
jamesagnew 22bec81bff Fix an intermittent test failure 2018-04-04 10:11:19 -04:00
jamesagnew b8b3ff8a8f Loinc property updates 2018-04-04 09:34:16 -04:00
jamesagnew 33ea06b983 Fix compile issues 2018-04-03 06:29:14 -04:00
jamesagnew f56151d5a9 Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-02 22:13:29 -04:00
James Agnew b6232b5683 loinc updates 2018-04-02 21:28:31 -04:00
James Agnew e31e1c029d Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-02 09:13:27 -04:00
James Agnew fe25d93fe6 Sync with master 2018-04-02 09:08:11 -04:00
jamesagnew c5b286921e Tests all passing 2018-03-30 15:18:57 -04:00
jamesagnew 673a3d6272 Bump to JDK8 2018-03-30 08:54:04 -04:00
jamesagnew 817569228b Merge branch 'master' into loinc_loader_update 2018-03-30 08:29:14 -04:00
jamesagnew dfdee93271 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-29 06:55:07 -04:00
jamesagnew 180336e076 Sync to master 2018-03-29 06:54:24 -04:00
jamesagnew 53c2d8a38d Merge branch 'master' into loinc_loader_update 2018-03-29 06:21:55 -04:00
jamesagnew ba46d330f1 Add a test 2018-03-29 06:21:45 -04:00
jamesagnew 418e82032f Prep for 3.3.0 2018-03-29 05:48:13 -04:00
James Agnew 4ad00c20d8 Add a test 2018-03-29 05:40:24 -04:00
jamesagnew 94b880fd4d Remove accidentally committed useless file 2018-03-28 10:13:51 -04:00
jamesagnew 4ba56d5021 Reorganize the OSGI projects a bit 2018-03-28 06:15:28 -04:00
James Agnew 55fc20b87e Add tests for #877 2018-03-26 10:04:49 -04:00
James Agnew 5beeda1af3
Merge pull request #877 from anthonys123/master
Fixes for issue #512 (:contains modifier not working).
2018-03-26 08:40:44 -04:00
jamesagnew a3a15ac9d8 Add test and credit for #819 2018-03-24 06:45:41 -04:00
James Agnew 4f519e0528
Merge pull request #819 from splatch/issue-815
Support for negation in search operations
2018-03-24 06:38:15 -04:00
James Agnew c6e1aac98d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-22 07:16:36 -04:00
James Agnew 45a16fe066 More loinc work 2018-03-22 07:16:16 -04:00
jamesagnew 1689dc889e Make server operation interceptor not perform superfluous calls for
conditional and no-op operations
2018-03-22 06:52:30 -04:00
James Agnew b89e0e7020
Merge pull request #879 from darktyco/issue-878-bundle-update-fix
Fixes issue #878 where resources in a bundle are updated even when no…
2018-03-22 06:50:39 -04:00
patrick-werner b97d303481 modified tinder plugin generation templates for Composition 2018-03-22 08:24:22 +01:00
James Agnew 308ac63a77 Merge branch 'master' into loinc_loader_update 2018-03-20 07:53:41 -04:00
James Agnew 9c5e32d7eb Fix up some logging 2018-03-20 07:53:21 -04:00
James Agnew 4ef07d27aa Try to avoid occasional test failure 2018-03-19 10:20:58 -04:00
James Agnew 6359f7f8a1 More work on loinc 2018-03-19 08:51:02 -04:00
James Agnew 3f6861ef55
Merge pull request #812 from jamesagnew/subscriptionsWithoutPayloadPOST
Added ability to create a resthook subscription without returning a p…
2018-03-19 06:25:31 -04:00
James Agnew e9ee87210a
Merge pull request #806 from honestica/quickfix-imcompartment
fix inCompartment for a collection of owners
2018-03-19 06:16:12 -04:00
patrick-werner ff04ab3358 ${argLine} -> [at]{argLine}
see:
http://maven.apache.org/surefire/maven-surefire-plugin/faq.html#late-property-evaluation
2018-03-19 10:45:33 +01:00
patrick-werner baa80f5cd3 started document operation implementation 2018-03-19 10:41:14 +01:00
patrick-werner c245798cc7 started document operation implementation 2018-03-15 17:23:49 +01:00
jamesagnew 30cd63b929 More loinc work 2018-03-11 19:11:31 -04:00
James Agnew 33554189a1 More loinc work 2018-03-11 15:46:59 -05:00
James Agnew b9802d0101 Document ontology done 2018-03-11 10:02:13 -05:00
James Agnew a5a7d75e58 Lots more additions to LOINC 2018-03-11 09:44:11 -05:00
James Agnew 5a653aeb20 Work on loinc mapping 2018-03-10 20:31:27 -03:00
James Agnew 611ee457cb Lots of addition of loinc 2018-03-07 13:33:49 -03:00
darktyco b18bb033bf Fixes issue #878 where resources in a bundle are updated even when no data changes 2018-03-06 13:28:06 -05:00
Anthony Sute 4da46cdb26 Fixes for issue #512 (:contains modifier not working). 2018-03-06 11:18:53 -05:00
jamesagnew e201091e3a Update licenses for changed files 2018-03-04 13:53:04 -05:00
jamesagnew d22670ddb5 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-04 12:21:07 -05:00
James Agnew 2f7751a079 Move stopwatch into hapi-fhir-base and add timing into to client
LoggingInterceptor
2018-03-04 12:13:18 -05:00
jamesagnew 8bdca012d6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-04 11:04:07 -05:00
jamesagnew 07290ae8a0 Sync to latest R4 code 2018-03-04 11:02:47 -05:00
James Agnew 928cf23b4c Logging enhancements 2018-03-04 10:21:39 -05:00
James Agnew cda27fdd18 Fix broken test 2018-03-01 14:06:31 -05:00
James Agnew a18303f117 Fix #872 - Include resource type in JPA uri search parameter criterias 2018-03-01 08:31:41 -05:00
jamesagnew ecf570ced9 More testing on #872 2018-03-01 07:25:35 -05:00
jamesagnew 7e4877c524 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-01 06:20:46 -05:00
jamesagnew a6e59a0f76 License header updates 2018-03-01 06:20:37 -05:00
James Agnew 790aaeb4ea Tests for #872 2018-02-28 21:34:32 -05:00
James Agnew 2eee606468 Fix 2 tests 2018-02-25 14:57:19 -05:00
James Agnew ef6ee83744 Remove test which is no longer applicable 2018-02-24 23:09:30 -05:00
James Agnew 136455f312 Fix #863 - Allow custom search parameters to use multiple bases 2018-02-24 22:10:55 -05:00
jamesagnew fd285b282f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-24 12:02:28 -05:00
jamesagnew d93bdfa47d Update license header 2018-02-23 15:54:57 -05:00
James Agnew 3b2930f8e9 Prevent a crash in testpage overlay when deleting a resource 2018-02-23 15:24:20 -05:00
James Agnew e241b31905 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-21 17:16:08 -05:00
James Agnew 7723405024 Fix #859 - Remove unused import on com.sun.prism 2018-02-21 17:15:15 -05:00
jamesagnew 72cf22e3a9 Fix #854 - Process ID substitutions on URIs for JPA 2018-02-20 07:32:49 -05:00
James Agnew 81305fb17f Don't deliver subscription results for deleetd resource 2018-02-19 20:58:55 -05:00
jamesagnew c38e306539 Allow disabling of reloading resources in subscription 2018-02-18 11:47:21 -05:00
jamesagnew a60e5cab2a Add config 2018-02-18 11:11:35 -05:00
jamesagnew 2f4ac42edb One more test fix 2018-02-18 09:17:04 -05:00
jamesagnew 3f1a0e81c7 Avoid endless reindex loop 2018-02-17 16:10:44 -05:00
jamesagnew e89f8e5ba4 Fix crash with unique search parameter updates in JPA 2018-02-16 07:39:46 -05:00
James Agnew 2847edd04a Correct subscription read before send 2018-02-15 17:38:29 -05:00
James Agnew 8ea527fa76 Make sure we load subscriptions from DB at some point 2018-02-15 17:13:27 -05:00
jamesagnew 4f45ad87f3 Adjust unit tests to deal with asynchronous search parameter registry 2018-02-15 07:12:30 -05:00
James Agnew e6253b7f22 Refresh search parameter cache asynchronously 2018-02-14 11:10:30 -05:00
James Agnew 329675a81d Fix test 2018-02-12 15:38:38 -05:00
jamesagnew d259b9a65d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-12 11:52:58 -05:00
James Agnew ab3ca5749a Add test for #793 2018-02-12 09:34:11 -05:00
jamesagnew a94a1370e7 Correct localization issue in test 2018-02-11 21:54:29 -05:00
James Agnew 18e4d85625 Add functions to stopwatch 2018-02-11 19:26:03 -05:00
James Agnew 261ecb6460 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-11 16:39:58 -05:00
James Agnew 388f51a823 Add some tests 2018-02-11 16:38:33 -05:00
jamesagnew 32b25f47d8 Update license header 2018-02-11 12:02:39 -05:00
James Agnew 7046d2fe94 Improve subscription procesing within a transaction 2018-02-10 17:05:09 -05:00
James Agnew 2edc9910e5 Add a test 2018-02-09 10:29:20 -05:00
James Agnew 80353e5d42 Better handle large search result deletion in JPA 2018-02-08 17:55:46 -05:00
jamesagnew fb327c60cd FIx spring boot issue 2018-02-04 15:04:45 -05:00
jamesagnew 48330a0fa6 Name the task scheduler bean 2018-02-04 13:32:34 -05:00
jamesagnew 087a130ded Test tweak 2018-02-04 08:50:52 -05:00
jamesagnew 86a0774305 Fix an issue in subscription interceptor which prevented the server from
starting if an invalid subscription was already in the database
2018-02-03 19:20:58 -05:00
James Agnew 3cbf669007 Don't crash on startup if an invalid subscription is in the database 2018-02-03 15:47:48 -05:00
James Agnew 1b9bbc90d6 Add some logging on failing test 2018-01-31 08:24:10 -06:00
James Agnew 4af52c160f Try to get HAPI building on JDK9 2018-01-31 06:41:24 -06:00
James Agnew 1c5a07b5a0 Fix #822 - Respect chained method params in a transaction search 2018-01-30 16:20:25 -06:00
James Agnew c5165e860b Add test for #811 2018-01-30 14:43:21 -06:00
James Agnew 8d468de551 Use R4 validator for DSTU3 validation 2018-01-30 11:16:04 -06:00
James Agnew 044b9f584a Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-01-28 14:02:53 -06:00
James Agnew f976b7bf7e Add new interceptor method which enabled interceptors to modify response 2018-01-28 14:01:20 -06:00
jamesagnew 2e4f80d7a3 Fix #831 - Remove useless TagListParam annotation 2018-01-26 10:03:21 -05:00
jamesagnew 6b366a58f7 Fixing occasionally failing test 2018-01-26 09:45:21 -05:00
jamesagnew 4e0e8fb8f8 Version bump a few dependencies 2018-01-26 06:22:06 -05:00
James Agnew 16038ece26 Version bump to 3.3.0-SNAPSHOT 2018-01-23 10:31:01 -05:00
James Agnew 4fd3e20d06 Remove duplicate resource body creation (Merge branch 'optimize_jpa') 2018-01-21 18:16:11 +08:00
James Agnew 4dcce4e582 Fix #832 - Correctly normalize text with Korean characters 2018-01-21 14:55:14 +08:00
jamesagnew 001bdbc07e Version bump to 3.2.0 2018-01-13 04:07:57 -05:00
James Agnew 6468ca474a Verion bump to 3.2.0 2018-01-13 02:14:33 -05:00
James Agnew 01186ec8cb Squashed commit of the following:
commit ab876ef864005b6758d3e00a1bb1ef2dad5d2161
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jan 12 18:59:15 2018 -0500

    Tests all passing

commit 4f8a5d98307da1bb5ca7602e34b1d3b791f73d25
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Jan 12 08:21:58 2018 -0500

    Almost compiling
2018-01-12 18:59:43 -05:00
James Agnew f58a03dacf Add some tests 2018-01-11 09:26:28 -05:00
jamesagnew b594b8eee2 FIx issues from merge 2018-01-10 06:27:23 -05:00
jamesagnew b0e196e5cf Merge branch 'master' into optimize_jpa 2018-01-10 06:27:15 -05:00
Łukasz Dywicki 66b6149bf6 Support for negation in search operations #815. 2018-01-09 22:29:01 +01:00
James Agnew d375977410 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-01-08 14:14:42 -05:00
James Agnew 9a72927dbc Fix #808 - Use version from meta if not found in the resource ID 2018-01-08 14:07:27 -05:00
jamesagnew 0352d48720 Bump copyright message to 2018 2018-01-08 13:52:15 -05:00
jamesagnew b420d02f2a Fix tests 2018-01-08 08:51:29 -05:00
jamesagnew 19c6369175 Test fix 2018-01-08 08:20:39 -05:00
jamesagnew 7e2459fbdc FIx up tests 2018-01-08 08:18:34 -05:00
jamesagnew 6fc88caa51 More work on optimizing JPA 2018-01-08 07:15:58 -05:00
James Agnew abf76a778f Add some tests for unique search params 2018-01-08 07:15:31 -05:00
James Agnew 377bae8c16 Allow interceptors to modify request contents 2018-01-06 14:27:32 -05:00
James Agnew 0369b7fd70 JPA server cleanup and add some tests 2018-01-05 16:41:18 -05:00
James Agnew 8b38334955 Fix some tests 2018-01-04 18:12:13 -05:00
James Agnew 2f5ce64755 Start work on removing duplicate resource body 2018-01-04 14:45:17 -05:00
James Agnew b18e71d4f5 Added new callbacks to IServerOperationInterceptor to be invoked before
other operation methods
2017-12-23 17:13:33 -05:00
Jeff Chung eb2d21ac4b Added ability to create a resthook subscription without returning a payload using an HTTP POST for notification 2017-12-22 17:14:45 -08:00
James Agnew fe37c87e78 Redirect test output to a file 2017-12-22 16:52:22 -05:00
James Agnew ce247ce37f Reuse forks when running surefire 2017-12-22 16:20:21 -05:00
James Agnew 5425172816 More travis fighting 2017-12-22 15:53:08 -05:00
James Agnew bf3c09f43d
Merge pull request #810 from darktyco/issue-809-date-search-params
Fixes issue #809 where date search params get deleted upon resource update
2017-12-22 15:43:07 -05:00
James Agnew 56fcdef93a Try still more to get travis building 2017-12-22 15:10:08 -05:00
James Agnew a8e5413d1f Fix two issues found by ErrorProne 2017-12-22 13:47:40 -05:00
Kyle Meadows 18344f2e32 Fixes issue #809 where date search params get deleted upon resource update 2017-12-22 10:35:14 -05:00
Jiajing LIANG 1f88823e8b add some test to check inCompartment rule works for a collection of owners, with Dstu3 and R4 fhir context 2017-12-21 11:42:38 +01:00
James Agnew 502f58022e Add some sorting tests 2017-12-18 06:03:09 -05:00
James Agnew 8595b7059e Let's try and get travis passing now 2017-12-15 16:38:32 -05:00
James Agnew ff477885e1 More fighting with tests 2017-12-13 20:13:18 -05:00
James Agnew 3a6a045d87 Fix two more tests.... grr... This should get appveyor working at least. 2017-12-13 17:52:56 -05:00
James Agnew cba3b5b6d8 More test fighting... 2017-12-13 15:24:16 -05:00
James Agnew 44ec091b35 Still more test tweaks 2017-12-13 13:29:24 -05:00
James Agnew 3363c5ce1b Still fighting with tests to get travis happy 2017-12-13 12:13:08 -05:00
jamesagnew 1a9b63aed6 Fix tests 2017-12-13 07:55:35 -05:00
jamesagnew 96e3135793 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-12-13 07:05:41 -05:00
jamesagnew 4ad5033b13 Add tests 2017-12-13 07:05:30 -05:00
James Agnew 0997167d50 Add test cases for DSTU2 custom search params 2017-12-12 22:08:02 -05:00
James Agnew 3e8fc0c89c Merge branch 'dstu2_custom_structs' 2017-12-12 21:47:05 -05:00
James Agnew bdf734fc3c Examples cleanup 2017-12-08 16:33:45 -05:00
James Agnew c86a2866d8 Reduce search log noise 2017-12-08 14:25:47 -05:00
jamesagnew 561dc86eb4 Test updates 2017-12-08 07:46:59 -05:00
James Agnew 7ce70a792d Add test for #801 2017-12-07 18:17:24 -06:00
James Agnew e838b0e32d Remove unneccesary column 2017-12-07 18:17:24 -06:00
James Agnew ea8ebd88ac Additional timing tweak to get tests passing across platforms 2017-12-07 11:27:11 -06:00
James Agnew f4bc82b300 Rename resource ID property to Resource server ID 2017-12-07 07:20:22 -06:00
James Agnew bbf1151d93 Try to prevent timing failures on Windows 2017-12-07 07:04:26 -06:00
James Agnew 8fae452eaa A little more test tweaking 2017-12-06 23:42:22 -06:00
James Agnew 36e719f92f Allow server assigned UUIDs instead of sequential IDs if conigured to do
so
2017-12-06 23:16:10 -06:00
James Agnew 0fb10b2636 Oops- fix one more test glitch 2017-12-05 14:33:01 -05:00
James Agnew d00c7dbea8 Giant breakthrough in fixing sporadic test failures! 2017-12-05 12:08:56 -05:00
jamesagnew d710682fed Fix searching in JPA with _id and _content params 2017-12-05 07:25:34 -05:00
jamesagnew e1c62ef03e One more test fix 2017-12-05 06:06:09 -05:00
jamesagnew 3a7fba6582 Fix 2 tests 2017-12-04 23:20:43 -05:00
James Agnew 863c4b370c Add some test debug logs 2017-11-25 20:32:42 -05:00
James Agnew 3e296f9d1b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-11-25 17:53:01 -05:00
James Agnew 6afe6804db Fix #796 - Correctly escape spaces in generated URLs 2017-11-25 17:52:12 -05:00
jamesagnew 5b909b4746 Version bump to 3.2.0-SNAPSHOT 2017-11-24 13:32:47 -05:00
James Agnew 584ba1eec4 Fix a crash on _include which doesnt find any matches 2017-11-24 12:22:26 -05:00
jamesagnew 42dd34252d Version bump to 3.1.0 2017-11-23 13:27:21 -05:00
jamesagnew 94be52304b Fix tests 2017-11-23 11:50:30 -05:00
James Agnew fc991a3333 Fix tests 2017-11-23 11:36:20 -05:00
jamesagnew ffac599a30 Credit and tests for #762 2017-11-23 06:42:10 -05:00
jamesagnew 9b246852ef Add test for #762 2017-11-22 19:45:36 -05:00
jamesagnew 98b2549135 Formatting 2017-11-22 19:45:18 -05:00
jamesagnew be76b90e7a Test formatting only 2017-11-22 19:22:32 -05:00
James Agnew 3aebfb575a
Merge pull request #756 from alvinleonard/751-fix-deletebyurl
Fix deleteByUrl to respect InCompartment Authorization
2017-11-22 19:19:32 -05:00
jamesagnew a4cbde8269 Prevent a spurious test failure 2017-11-22 18:45:54 -05:00
James Agnew 4042a3a353 Prevent accidental deletion of deeply nested resources in JPA server 2017-11-22 18:17:35 -05:00
James Agnew a87323fa08 Add tests 2017-11-17 09:53:44 +01:00
James Agnew 0d0300623f Streamline search coordinator to improve performance 2017-11-15 18:31:03 +01:00
James Agnew 6ca1498277 Fix tests for spring boot 2017-11-13 15:49:12 -05:00
James Agnew 49f4ac4fc5
Merge branch 'master' into analyzer-def-using-search-mapping 2017-11-13 13:32:40 -05:00
James 32a4a081d9 More test work -- Ahhhhh travis grr 2017-11-08 20:01:54 -05:00
James Agnew f91977cbac Beef up logging in tests 2017-11-08 16:53:39 -05:00
James Agnew 395c8b6acc Add test for #773 2017-11-07 09:58:42 -05:00
James Agnew 37c8e6c645 Add test for #751 2017-11-05 18:52:28 -05:00
James Agnew 75bfb6af1b Add support for Binary X-Security-Context header in server 2017-11-02 11:38:43 -04:00
James 3cd7c8a61c Fix tests to work on Windows 2017-10-31 20:38:26 -04:00
James 5a5933f232 Remove dependencies on StAX on Android 2017-10-30 16:41:31 -04:00
James Agnew 64e120cef8 Custom structs in progress 2017-10-30 16:19:09 -04:00
James 792035f8af Add more logging to occasional failing test 2017-10-26 21:45:50 -04:00
James Agnew f475483e9b Test fix 2017-10-26 12:05:45 -04:00
James d461567433 Allow cache-control to be used with CORS 2017-10-26 09:08:10 -04:00
James 15ba0dff03 Clean up email subscription type 2017-10-26 06:02:12 -04:00
James 59975948b2 Test fixes 2017-10-22 21:56:44 -04:00
James 33f9437472 Try to get tests passing under load 2017-10-21 16:35:47 -04:00
James b79dd75fce Update to Spring 5 2017-10-19 07:40:43 -04:00
James Agnew a265de8649 Validation fixes for QuestionnaireResponse validation 2017-10-18 11:59:22 -04:00
James Agnew 90ecaef87c Allow Fulltext search Svc to be null 2017-10-17 16:43:03 -04:00
James 73382d85ca Fix #761 - Restore codesystem package from DSTU3 and add unit tests to
verify existence
2017-10-17 15:18:36 -04:00
James 0959156a4a Faster processing for mandatory count searches 2017-10-17 14:11:05 -04:00
James Agnew 8b7723b6e8 Make sure a transaction is active when activating subscriptions 2017-10-16 21:28:19 -04:00
James Agnew 175f9dfc5a Remove dependency on StAX for XML parsing in DSTU2 Xhtml type 2017-10-16 17:22:50 -04:00
James a782bd7630 Fix a number of problems reported by ErrorProne 2017-10-16 10:00:27 -04:00
James Agnew 9ca85b4cf3 Re-enable errorprone on standard hapi fhir build. woohoo! 2017-10-15 11:27:30 -04:00
James 9abc75dc32 Fix another test 2017-10-13 11:03:43 -04:00
James Agnew 290894557d Optionally require JPA server to collect count information even for
large searches
2017-10-13 06:31:37 -04:00
James Agnew 9b31741147 Correctly process ifMatch in Bundle entries for JPA server transaction 2017-10-11 13:00:37 -04:00
James Agnew 78b7188fbc Fix validation error when Bundle has no type 2017-10-11 10:20:12 -04:00
James fddda443a2 Remove hamcrest-date library that caused conflicts 2017-10-11 06:33:15 -04:00
James 31fb1236a1 Reuse bundle ID when returning query cache results 2017-10-11 06:05:14 -04:00
Alvin Leonard 2114dd7706 We need to set the resource id to the entity id after the update entity. 2017-10-11 15:09:41 +11:00
Alvin Leonard 6551eb0a4e Fix deleteByUrl to respect InCompartment Authorization
Moved the assignment of the resource to delete before the actual delete as it will be used by the authorization to determine if this resource is in the compartment.
2017-10-11 13:40:03 +11:00
Jiajing LIANG 86fb1de3ae rename file 2017-10-09 18:34:49 +02:00
Jiajing LIANG 65c3a316f2 move out the analysers definitions from entity classes 2017-10-09 18:34:03 +02:00
James Agnew bacd0bfbbb Squashed commit of the following:
commit 7ff895de77
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 15:25:06 2017 -0400

    More test fixes

commit c9fee23e48
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 15:14:52 2017 -0400

    More tests work

commit c796e19458
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 15:00:26 2017 -0400

    Get tests passing

commit eb2787d30c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 14:08:23 2017 -0400

    Add an optimistic lock to the ResourceTable

commit ff85503acb
Author: James <jamesagnew@gmail.com>
Date:   Fri Oct 6 08:56:35 2017 -0400

    Add a test
2017-10-06 15:33:24 -04:00
James Agnew b4127674e4 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-10-05 13:42:31 -04:00
James Agnew 0ab8a9a0ba Fix #744 - Long search URLs on Derby shouldn't cause a failure 2017-10-05 13:41:22 -04:00
James ce720f5601 Add support for Cache-Control header in JPA server and client 2017-10-05 13:38:53 -04:00
James 4d1ab2734f Use correct parameter name for expand operation 2017-10-02 19:21:52 -04:00
James 56a71f9222 Performance enhancements to JPA 2017-09-29 09:28:47 -04:00
James Agnew 9ac6014a3c Add test logging 2017-09-29 09:11:54 -04:00
James Agnew 87383ad802 Version bump to 3.1.0-SNAPSHOT 2017-09-27 21:23:34 -04:00
James Agnew ac7074ffdd More notes 2017-09-26 19:05:53 -04:00
James e19c13fa6f Prepare 3.0.0 release 2017-09-24 17:55:16 -04:00
James 49bdaa1a45 Version bump to 3.0.0 2017-09-23 17:31:39 -04:00
James Agnew 4f8a2d36f5 Fix import statements 2017-09-23 11:09:26 -04:00
James Agnew 478dc1d507 Create model for subscription messages 2017-09-23 10:14:50 -04:00
James c115fbfd15 Add serializable message type 2017-09-23 07:42:29 -04:00
James be07ebc4ef Subscription refactoring 2017-09-21 08:33:20 -04:00
James 5f89f6ed16 Improve test logging 2017-09-21 06:13:30 -04:00
James 2fa912a43f Use serialized messages for queues 2017-09-19 22:01:36 -04:00
James Agnew d65664cd9b Work on test 2017-09-18 18:06:27 -04:00
James Agnew 1402c5e4e2 Remove some useless logging 2017-09-18 18:04:08 -04:00
James Agnew 79cb251b7e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-09-17 20:05:59 -04:00
James Agnew fc7144ee03 Work on JPA optimization 2017-09-17 20:05:28 -04:00
James feb9852a25 Allow disabling :missing indexes in JPA 2017-09-17 18:37:09 -04:00
James 9eb2848aca One more test fix 2017-09-16 19:48:01 -04:00
James 78929752af License headers 2017-09-16 19:46:19 -04:00
James 36d9180570 Fix broken tests 2017-09-16 17:47:06 -04:00
James Agnew 7a878152c4 Refactor subscriptions to use a single codebase across versions 2017-09-16 15:03:22 -04:00
James Agnew 7d4bb8b9cb Add tests 2017-09-15 06:18:26 -05:00
James Agnew 1ac45e27c6 Deprecate subscription settings in DaoConfig that are no longer used 2017-09-15 05:57:42 -05:00
James Agnew e94d639d29 Refactor websockets to use queuing mechanism 2017-09-14 21:29:57 -05:00
James Agnew 97b44965ce Lots of work on new subscription model 2017-09-13 19:05:29 -07:00
James Agnew 415f2bc72d Merge branch 'master' into con16_subscriptions 2017-09-10 08:49:28 -07:00
James Agnew f216e0938d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-09-10 07:24:09 -07:00
James Agnew 85aef0a853 Refactor tests 2017-09-10 07:23:57 -07:00
James Agnew 805fbad6ce All recreating code systems with previously used URL 2017-09-09 21:49:26 -07:00
James Agnew 2bb01451ea Cleanup of validator 2017-09-09 20:55:00 -07:00
James Agnew 3bd7810bd7 Subscription refactor started 2017-09-09 14:25:05 -07:00
James 4b78fd8029 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-09-09 17:23:32 -04:00
James 9097acfc0c updates to subscription 2017-09-09 17:20:18 -04:00
James Agnew 736e037b1a Ongoing work on subscriptions 2017-09-09 09:53:51 -07:00
James Agnew 836d4d051b Work on IG Pack uploading 2017-09-07 20:33:19 -07:00
James Agnew df3aa86471 Use higher thread count for subscription processor by default 2017-09-06 11:08:43 -07:00
James Agnew 989246f0da Include Location header details in non-verbose response for client
interceptor
2017-09-06 06:26:41 -07:00
James Agnew 7eb86d3eaa Work on tests 2017-09-05 19:00:42 -07:00
James Agnew c32e8d42b3 Fix more tests 2017-09-05 18:04:46 -07:00
James Agnew 118c40beeb Fix a few tests 2017-09-05 17:52:14 -07:00
James Agnew 984c0c387c Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-09-05 17:34:02 -07:00
James Agnew 2aa538bd56 Add ability for system to track unique constraints 2017-09-05 17:33:19 -07:00
James 0eea7b8f1f Fix android build hopefully 2017-09-01 06:39:55 -04:00
James Agnew c6ddf89557 Allow validation of subscriptions to be overridden 2017-08-31 22:40:53 -04:00
James 78fd13c2f4 Add config item to auto create references in JPA 2017-08-31 08:57:51 -04:00
James a24cbd7da5 uto register subscriptions on startup 2017-08-31 06:46:59 -04:00
James Agnew cae21f4898 Update syntax highlighter to not use tables 2017-08-28 10:26:07 -04:00
James Agnew ff8b5607f3 More test cleanup 2017-08-24 22:19:12 -04:00
James Agnew c31ebebdea Revert last perf change 2017-08-24 15:25:53 -04:00
James Agnew 18213f1af9 Try to speed up terminology reindexing 2017-08-24 15:04:53 -04:00
James Agnew dbe35b9be2 More tweaks to concept refreshing 2017-08-24 14:35:45 -04:00
James Agnew 64e03997aa Additional logging in term service 2017-08-24 13:36:20 -04:00
James Agnew 1ec14f4a31 Small perf improvement for JPA terminology 2017-08-24 13:07:05 -04:00
James Agnew 83171292df Try to get tests passing 2017-08-22 08:44:35 -04:00
James 46c04488de Use correct verb for rest hook notifications 2017-08-19 19:14:52 -04:00
James e3a28e2ff5 Split out delivery and processing channel for subscriptions 2017-08-19 12:15:19 -04:00
James Agnew 7764484f44 Try to prevent test failure under load 2017-08-18 13:57:43 -04:00
James Agnew 45ddf372ce Try to fix broken test 2017-08-18 07:07:39 -04:00
James Agnew 67a3b60d58 Add hook to rest hook subscriber 2017-08-17 06:40:43 -04:00
James Agnew 572a37593a Increase timeout 2017-08-16 09:34:27 -04:00
James Agnew 1c2af596d4 Add logging to test 2017-08-15 11:34:05 -04:00
James Agnew a8c91ce6f5 Try to get travis building again 2017-08-15 10:30:00 -04:00
James f04b080d50 Honour headers in rest hook subscribers 2017-08-15 07:42:18 -04:00
James c9487c974e More work fixing tests 2017-08-14 22:08:21 -04:00
James 94953e8a5c Merge in latest work on subscriptions and GraphQL 2017-08-14 22:00:59 -04:00
James b9494c179a Squashed commit of the following:
commit fa508e27b2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:38:12 2017 -0400

    Fix android tests

commit dea567e960
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:25:28 2017 -0400

    Still trying to get tests passing

commit 6bbfec381f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:00:59 2017 -0400

    Work on getting tests passing

commit 5e0a7672b7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 18:12:58 2017 -0400

    Work on GraphQL integration

commit 1c88fd154d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 15:19:41 2017 -0400

    Upgrade subscriptions to use interceptors across the board

commit de5c01c00d
Author: James <jamesagnew@gmail.com>
Date:   Mon Aug 14 09:09:32 2017 -0400

    Work on subscription

commit 387d504098
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 06:19:25 2017 -0400

    Work on subscriptions

commit 95a607d155
Merge: d851de7ffd b9dbd64101
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:42:22 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit d851de7ffd
Merge: 5413b276af 209752cd63
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:42:00 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit b9dbd64101
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:40:35 2017 -0400

    Work on subscriptions

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 5413b276af
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:36:25 2017 -0400

    Work on graph QL support

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
2017-08-14 21:35:56 -04:00
James 04f16294aa Fix subscriptions 2017-08-13 16:02:35 -04:00
James be5c5ebecd Merge in HAPI 3.0.0 working branch!
Squashed commit of the following:

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
2017-08-13 14:39:47 -04:00
James 1e158311d8 Fix tests for #710 2017-08-13 13:43:31 -04:00
James Agnew b16c94bb0a Merge pull request #710 from jamesagnew/issue675-activate-subscriptions
Fix for rest-hook subscriptions are not becoming active #675
2017-08-13 10:55:26 -04:00
James Agnew 6efafe62f1 Merge pull request #688 from CarthageKing/bugfix-issue659
Correctly serialize baseurl/FooResource references
2017-08-12 14:51:46 -04:00
Jeff Chung eea44b4b9a Fix for rest-hook subscriptions are not becoming active #675 2017-08-10 15:17:31 -07:00
James Agnew cb2cea54d7 Merge pull request #693 from jamesagnew/ConcurrentModificationRestSubscriptionFix
Fix to prevent rare Concurrent Modification Exceptions
2017-07-26 17:26:45 -04:00
James Agnew 274e218494 Fix #696: Corresctly handle negative numbers 2017-07-26 16:59:35 -04:00
James 42a81f4a85 Fix some unit tests 2017-07-24 06:06:27 -04:00
James Agnew f5f1f5bd67 More work on detecting deadlocks 2017-07-21 18:40:40 -04:00
James fa050c4665 Restore random connection count to tests 2017-07-21 08:12:22 -04:00
James a13c78d6cc FIx deadlock in transaction processing, and put transaction outcome
in the right spot
2017-07-21 07:39:11 -04:00
James 6a178b08bd Adjust tests 2017-07-20 15:24:06 -04:00
James Agnew 0f50eae640 Remove an unneeded log entry 2017-07-20 15:23:33 -04:00
James Agnew 82e2aadf86 Adjust for postgres 2017-07-20 14:45:42 -04:00
James Agnew 49ddf76a5d Reduce stress test impact 2017-07-20 14:18:26 -04:00
James Agnew 722eab62f2 Avoid opening two transactions for paging requests 2017-07-20 14:03:11 -04:00
James Agnew 2b72bb6c2f One more deadlock 2017-07-20 13:44:09 -04:00
James Agnew 82171da0cc One more deadlock 2017-07-20 11:19:53 -04:00
James Agnew 9d08e1e211 Fix deadlock 2017-07-20 11:00:17 -04:00
James Agnew 517fafbd0a Add check 2017-07-20 10:18:46 -04:00
Jeff Chung a49e009cba Fix to prevent rare Concurrent Modification Exceptions 2017-07-17 15:10:38 -07:00
michael.i.calderero 11aa1c5a9e fix for #659 2017-07-10 18:10:31 -05:00
James Agnew d3fa442958 Skip stress tests on Travis 2017-07-05 09:44:03 -04:00
James Agnew c1d06084b7 Avoid deadlock in JPA server when creating a large number of resources
and using the RequestValidatingInterceptor
2017-07-04 21:53:26 -04:00
James Agnew 294d080bd3 Add config setting for JPA resource counts in metadata 2017-07-01 16:28:42 -04:00
James Agnew 73a8cf1fca Don't allow creating resources with references to deleted resources 2017-06-30 22:20:43 -04:00
James 9270afe410 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-30 21:32:10 -04:00
James Agnew dd7b1b28c2 Fix failing tests 2017-06-30 21:32:01 -04:00
James 12acb3443e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-30 21:04:36 -04:00
James Agnew 6e181b140d Correct an issue when processing transactions in JPA server where updates and
creates to resources with tags caused the tags to be created twice in the
            database. These duplicates were utomatically filtered upon read so this issue
            was not user-visible, but it coule occasionally lead to performance issues
            if a resource containing multiple tags was updated many times via
            transactions.
2017-06-30 21:00:25 -04:00
James 0098a21d7a Add license header 2017-06-30 16:29:25 -04:00
James Agnew c9fcef0372 Clean up handling of searches nested in batch and transaction 2017-06-30 16:20:32 -04:00
James Agnew 28a5b92fe2 Enforce a hard limit on meta size 2017-06-30 09:58:32 -04:00
James Agnew d626c58067 Dont fail on cleanup 2017-06-30 08:42:11 -04:00
James b44bdeec88 Clean up rest hook interceptor a bit 2017-06-30 07:24:33 -04:00
James d81565b87c Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-29 22:16:46 -04:00
James dfd37c69d8 Add tests 2017-06-29 22:16:39 -04:00
James Agnew 7834bb2625 Do not load results into the database in JPA if there is no paging
provider
2017-06-29 22:15:23 -04:00
James Agnew 674424a30b Add tests 2017-06-29 21:34:56 -04:00
James Agnew 10ff2dd16c Add test 2017-06-28 19:54:24 -04:00
James Agnew 3ed12ce944 Improve performance of JPA searches by using Hibernate ScrollableResults 2017-06-28 18:13:44 -04:00
James 0a4dcc32ec Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-27 21:13:40 -04:00
James Agnew 9939785713 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-27 21:13:04 -04:00
James Agnew a0004c9166 Fix issue in calling JPA server transactions programmatically where
resources
            are linked by object reference and not by ID where indexes
				were not correctly
				            generated. This should not affect most users.
2017-06-27 21:12:20 -04:00
James 6d55ef59a6 Comment cleanup 2017-06-26 06:23:03 -04:00
Jeff Chung 0b578e3b0b Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir into validate-subscription-criteria 2017-06-19 14:13:50 -07:00
James Agnew e147cf321d Fix #674 - Avoid duplicates in $everything query
Squashed commit of the following:

commit f3097f423f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 13:24:29 2017 -0400

    more travis fun

commit a4b8161597
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 10:43:33 2017 -0400

    More fighting with travis

commit fe47d1e864
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 10:10:55 2017 -0400

    More travis attempts

commit 4fdfe7a4e8
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 09:25:04 2017 -0400

    Try and run unit tests in 2 threads to cut time.. Will travis like this?

commit 571045b63d
Author: James <jamesagnew@gmail.com>
Date:   Mon Jun 19 07:35:46 2017 -0400

    Paging now working

commit 526a1fa7d0
Merge: cebe881a15 55a67ae055
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 06:19:37 2017 -0400

    Merge branch '674_everything_improvements' of github.com:jamesagnew/hapi-fhir into 674_everything_improvements

commit cebe881a15
Merge: b3b9273ca7 5789cd2a46
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 06:19:12 2017 -0400

    Merge branch 'master' into 674_everything_improvements for #674

commit b3b9273ca7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 06:16:27 2017 -0400

    Work on everything fixes for #674

commit 55a67ae055
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 06:16:27 2017 -0400

    Work on everything fixes
2017-06-19 13:56:38 -04:00
Jeff Chung ad3d5489ea Fixed FHIR subscriptions with criteria previously limited to 10, added fhir criteria validation before create/update, added dstu2 configurations 2017-06-16 14:25:57 -07:00
James 10fd88bfec Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-16 10:53:32 -04:00
James Agnew e27ceead55 Fix test 2017-06-16 10:53:25 -04:00
James 76e3428d33 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-16 10:35:57 -04:00
James Agnew 1047c63f3c Add missing commit for JPA maximum fetch size 2017-06-16 10:35:39 -04:00
James b474a1f2ef Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-16 10:00:27 -04:00
James 507cac3127 Respect prefer header on transaction processing 2017-06-16 09:52:12 -04:00
James Agnew 40a70b874c Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-16 09:49:06 -04:00
James Agnew d40c5fa5e3 Add DAO setting to specify maximum query size 2017-06-16 09:41:45 -04:00
James Agnew 69849dd3c5 Optimize queries in JPA 2017-06-14 08:35:41 -04:00
James Agnew d59b832e74 Merge branch 'master' into minute_precision_in_searchparams 2017-06-12 11:50:01 -04:00
James a50a86d9af Fix crash in JPA server if numeric search parameter has no value 2017-06-11 09:16:48 -04:00
James Agnew 404037b441 Fix some compile issues 2017-06-09 19:37:11 -04:00
James Agnew c2e5fa3f18 Fix #667 - When using the AuthorizationInterceptor with the JPA server, when a client is updating a resource from A to B, the user now needs to have write permission for both A and B 2017-06-09 11:48:17 -04:00
James 14edc79ac1 Version bump to 2.6-SNAPSHOT 2017-06-09 07:28:29 -04:00
James 8b5209ff67 Version bump to 2.5 2017-06-08 06:34:44 -04:00
James Agnew b6e9a753ca Merge pull request #660 from HHSIDEAlab/fix-race-condition-in-if-none-exists
Hacky but workable fix for race condition surfaced by If-None-Exists creates
2017-06-07 21:51:05 -04:00
James Agnew 4caa5dfa8d Merge pull request #656 from aehrc/feature/scalable_searchbuilder
Improve SearchBuilder query generation for code:modifier searches
2017-06-07 21:35:50 -04:00
James Agnew 7c6bb01a8b Don't allow JPA server to save duplicate or empty tags, and fix #664 by
preventing multiple threads from loading structure definitions for
validation at the same time
2017-06-06 16:44:13 -04:00
Karl M. Davis aa134fc423 Hacky but workable fix for race condition surfaced by If-None-Exists creates.
Some notes from other attempts I made to fix this in a less hacky way:

* Tried to @Autowire myResourceDaos from a setter (rather than using the annotation on a field), and initialize myResourceTypeToDao in that setter, instead. Couldn't get it to work: Spring started throwing odd bean dependency errors. Don't really understand why.
* Tried to move the exceptions being thrown on null getDao(Class) results into that method, but that was breaking a test case. Didn't investigate why.
2017-06-01 03:17:38 -04:00
James Agnew 52a5fcce17 Adding logging 2017-05-30 15:39:33 -04:00
James Agnew 97c83cd8f0 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-05-30 10:05:34 -04:00
James Agnew 3db4091601 Add a null check 2017-05-30 10:05:27 -04:00
James 6d59b0f5e0 Indexing logging 2017-05-30 10:01:33 -04:00
Michael Lawley d0a927ae3f use disj. of AND and IN for code:modifier searches
Without this, OR conditions with too many disjuncts are generated which can lead to
failures in the underlying database code generation.
2017-05-29 14:57:16 +10:00
James ba40f44d27 Properly index decimal datatype 2017-05-26 06:39:38 -04:00
Jeff Chung 2fa7aedf63 Fixed the resource type comparison to not use startsWith 2017-05-25 16:47:09 -07:00
James Agnew b96932a5c5 Fix dependency on new version of commons-codec 2017-05-25 15:24:47 -04:00
James e2b329382a Add some logging to searches 2017-05-25 08:31:29 -04:00
James Agnew 32de48f392 Fix broken tests 2017-05-24 15:50:53 -04:00
James Agnew 5bdd10c7ab Include patient in $everything even if there are no other resources 2017-05-24 14:24:01 -04:00
James 3f712fdf8a POM updates 2017-05-22 17:25:05 -04:00
James d54b62ffe4 Fix compile errors 2017-05-22 16:42:51 -04:00
James 1ec180628f JPA server now has configurable properties that allow referential integrity to be disabled for both writes and deletes. This is useful in some cases where data integrity is not wanted or not possible. It can also be useful if you want to delete large amounts interconnected data quickly. 2017-05-22 15:34:44 -04:00
James a834770e38 A bit more cleanup for #646 2017-05-22 08:13:00 -04:00
James b71ba86a3a Update copyright per plugin 2017-05-21 16:37:27 -04:00
James a13247ad4b Updates for #646
Squashed commit of the following:

commit 9d6d5e92dabb75c4eb185b061d20f487b8856795
Author: James <jamesagnew@gmail.com>
Date:   Sun May 21 15:27:26 2017 -0400

    Get subscriptions working

commit 6bccdd7594f0a4f802212e11cc823f7a92dd9a5c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun May 21 14:37:40 2017 -0400

    Work on subscription

commit 129f4c9d0d1e6c8fa56dbc5cf78a34c1d6659705
Author: James <jamesagnew@gmail.com>
Date:   Sat May 20 19:58:11 2017 -0400

    Work on merging subscription
2017-05-21 15:28:08 -04:00
James Agnew 5ef8b70a1f Merge branch 'master' into master 2017-05-20 18:25:02 -04:00
James 20c14fe8a6 Make sure we don't update unchanged resources in a transaction 2017-05-20 17:55:09 -04:00
James f6ee4db598 Process :missing qualifier on date params 2017-05-19 20:36:06 -04:00
James Agnew 7a24bff0eb Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-05-19 17:15:07 -04:00
James Agnew a7bb01393a Add tests 2017-05-19 17:14:50 -04:00
James 2143c6906b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-05-19 10:13:45 -04:00
James 7c48eadf38 Add tests 2017-05-19 06:50:01 -04:00
James Agnew 8701e3ad61 Change millis to int for stopwatch 2017-05-18 22:06:40 -04:00
James Agnew 9ea8e7822a More fixes for chaining on custom search params 2017-05-18 17:16:30 -04:00
James Agnew d58a9e7ed4 Further fixes to searching on a chained value 2017-05-18 10:48:05 -04:00
James Agnew a92d80d860 Correctly encode extensions on the root of a resource with type
reference
2017-05-17 12:40:10 -04:00
James Agnew 7bb9e5edd9 Custom search parameters could not chain an extension param 2017-05-17 10:46:22 -04:00
James 5ac91bfb94 Add a test for custom params 2017-05-17 08:19:11 -04:00
James Agnew b2996d3550 Fix interceptor behaviour 2017-05-15 23:12:50 -04:00
James Agnew d87b4f2062 Re-enable daoconfig interceptors 2017-05-15 22:11:29 -04:00
James da2d7c3bc3 Clean up testpage overlay 2017-05-14 11:27:52 -04:00
James Agnew 5b282c3b25 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-05-14 06:39:37 -04:00
James Agnew 897c65e818 CLI and HttpClient cleanup 2017-05-14 06:39:23 -04:00
James cf2d38498d Header update 2017-05-10 02:12:22 -04:00
James Agnew 95659bed3a Fix tests 2017-05-10 08:11:23 +02:00
Jeff Chung 663125fe94 Resthook subscription implementation, event driven websocket subscription implementation, Tminus subscription support, notification on delete 2017-05-09 15:08:59 -07:00
James Agnew 579e5da5ff Make sure we reuse searches 2017-05-09 11:47:05 +02:00
James Agnew 262e39e57a Work on term 2017-05-06 11:41:30 +02:00
James Agnew ef772547c3 Fix an issue in the JPA server if a resource has been previously saved containing vocabulary that is no longer valid. This only really happened if you were using a non-final version of FHIR (e.g. using DSTU3 before it was finalized) but if you were in this situation, upgrading HAPI could cause you to have old codes that no longer exist in your database. This fix prevents these from blocking you from accesing those resources. 2017-05-06 10:51:17 +02:00
James Agnew e53d747f2b Get large searches working on Oracle 2017-05-05 15:45:45 +02:00
James 3780248a2f Update JPA defs based on new unit test 2017-05-04 06:56:28 -04:00
James Agnew fdd82e0b2a Shorten column names in Search table for JPA 2017-05-04 05:51:02 -04:00
James Agnew c5c6c5eff6 Fix deadlock regression in JPA 2.5-SNAPSHOT 2017-04-29 07:20:43 -04:00
James f21ab8bfe6 Add synchronization to SP registry 2017-04-24 07:40:53 -04:00
James Agnew 93b61aac90 Force resource updates when reindexing 2017-04-23 22:20:58 -04:00
James bb9cd7c198 Add configuration property to DSTU3 FhirInstanceValidator to allow client code to change unknown extension handling behaviour. 2017-04-23 19:28:45 -04:00
James 9c595e18f9 Ignore updates that don't actually change anything 2017-04-23 15:04:19 -04:00
James 841cfb8cf3 Fix test failures from search cleanup 2017-04-22 13:08:29 -04:00
James fa2950dacb Fix tests for expiring search results 2017-04-22 08:50:51 -04:00
James dd5580ed2d Search reuse merged in 2017-04-22 07:47:05 -04:00
James 405ac50351 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-04-22 06:34:36 -04:00
James c311a0b3bf Work on JPA performance 2017-04-22 06:34:24 -04:00
James Agnew c09e26e28f Clean up calls in JPA server for ID 2017-04-22 06:31:55 -04:00
James 716fa56b8f Merge branch 'jpa_perf_enhancements' 2017-04-21 06:30:22 -04:00
James cbc652d226 Version bump to 2.5-SNAPSHOT 2017-04-20 16:13:15 -04:00
James Agnew 282f90d174 Perf work 2017-04-20 05:59:10 -04:00
James 9d3d15ce6f Version bump to 2.4 2017-04-19 21:38:36 -04:00
James Agnew 552bd90d59 More perf work 2017-04-19 18:08:38 -04:00
James cc526f6d99 Upgrade to STU3 2017-04-18 21:58:23 -04:00
James Agnew 61a61cddee More perf work 2017-04-18 21:02:25 -04:00
James 077676fd03 Bring DSTU3 structs up to FHIR R3
Squashed commit of the following:

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Author: James <jamesagnew@gmail.com>
Date:   Tue Apr 18 07:44:08 2017 -0400

    More work on bringing structs up to date

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Author: James <jamesagnew@gmail.com>
Date:   Tue Apr 18 07:12:45 2017 -0400

    Working

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Author: James <jamesagnew@gmail.com>
Date:   Mon Apr 17 22:18:24 2017 -0400

    Updates to STU3

commit 40aebba0a7
Author: James <jamesagnew@gmail.com>
Date:   Mon Apr 17 18:30:26 2017 -0400

    Fix regression caused by #610
2017-04-18 07:48:38 -04:00
James 4bf97e836a Fix memory leak 2017-04-18 06:13:48 -04:00
James 7f2cf17f9f Fix perf issue 2017-04-17 17:29:32 -04:00
James 5adc09ad56 perf enhancements finally working 2017-04-17 16:56:53 -04:00
James Agnew fbbe792726 Perf work 2017-04-17 14:00:36 -04:00
James Agnew 08ec97e78a More work on perf 2017-04-16 15:57:58 -04:00
James Agnew 217d9f8176 More perf work 2017-04-16 14:46:15 -04:00
James Agnew 62ece72e6f More perf work 2017-04-16 12:08:23 -04:00
James Agnew 913fd422a1 Merge branch 'master' into jpa_perf_enhancements 2017-04-14 11:30:19 -04:00
James Agnew f6acb5633b Work on perf 2017-04-14 09:50:05 -04:00
James Agnew 54055f5bfb Support extensions pointing to references for JPA custom search params 2017-04-14 07:26:49 -04:00
James 1039bbec97 More perf work 2017-04-14 07:25:01 -04:00
James Agnew 23b7de5dd8 More perf work 2017-04-12 18:28:10 -04:00
James 81aae2b672 More perf work 2017-04-11 06:56:17 -04:00
James Agnew cba5aeb47b More perf work 2017-04-10 17:55:50 -04:00
James Agnew 0a8900ee78 Perf updates possibly working? 2017-04-10 16:29:24 -04:00
James aa02dd5037 More perf work 2017-04-10 08:05:25 -04:00
James Agnew 04468c8352 More perf work 2017-04-09 21:52:55 -04:00
James e32d6bb56e More perf work 2017-04-09 20:06:56 -04:00
James bf0f1421b3 Work on perf 2017-04-09 19:13:55 -04:00
James fa435fb8b2 More perf work 2017-04-09 11:48:56 -04:00
James Agnew c5c154346e More work on perf 2017-04-08 22:21:57 -04:00
James Agnew 801ae7cb75 NOFT test passing 2017-04-08 21:19:10 -04:00
James 90a4e2def2 More work on perf improvements 2017-04-08 19:46:51 -04:00
James Agnew 08e5681d8b Work on perf 2017-04-08 15:12:10 -04:00
James Agnew dd84fced5e Merge branch 'master' into jpa_perf_enhancements 2017-04-08 06:54:13 -04:00
James Agnew 0a61096f6f Add JPA utility method 2017-04-07 11:14:48 -04:00
James 8284fcab1b More work on performance 2017-04-07 08:37:48 -04:00
James Agnew 660c2bde72 More work on perf 2017-04-06 22:23:20 -04:00
James Agnew f48d0d677b More work on performance 2017-04-06 12:50:36 -04:00
James 1581cdf9a8 Work on perf 2017-04-04 08:26:04 -04:00
James Agnew 233eb54710 Work on perf 2017-04-03 22:05:53 -04:00
James Agnew 9b1366734a Merge branch 'master' into jpa_perf_enhancements 2017-04-03 15:20:55 -04:00
James Agnew 6ab1cb4c2e Fix compile issues from new version of errorprone 2017-04-03 14:43:59 -04:00
James Agnew efaa7a74cb Work on perf enhancements to JPA 2017-03-30 19:58:32 +08:00
James Agnew ce73e89715 For bit of work on JPA perf enhancements 2017-03-30 06:28:34 +08:00
James Agnew 2c9a6e65e7 Fix #534: Add setting for logical references to DAOConfig
Merge branch 'master' into issue534
2017-03-30 03:21:50 +08:00
James Agnew 14d861992c Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-03-29 15:29:10 +08:00
James Agnew c6555ddd4f DaoConfig#setAllowInlineMatchUrlReferences now defaults to true 2017-03-29 15:23:23 +08:00
James Agnew d9749b652d Work on issue 534 2017-03-29 15:19:52 +08:00
Diederik Muylwyk 4748c8ba74 New DSTU2 FhirInstanceValidator bean exposed. (#611)
Merging with master, issue #609 will be closed.
2017-03-28 23:19:20 -04:00
James Agnew 3ecfbf098f Work on #534 2017-03-27 08:37:31 +08:00
James Agnew 72f682d81e Refactor search param registry 2017-03-18 19:36:10 -04:00
James 40848b1beb Version bump to 2.4-SNAPSHOT 2017-03-18 12:24:39 -04:00
James d009e836bb Fix tests for 2.3 2017-03-18 08:06:18 -04:00
James e18ab206d7 Version bump to 2.3 2017-03-17 21:21:59 -04:00
James 8758b6f3da Updating to 1.9.0 structures
Squashed commit of the following:

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Date:   Fri Mar 17 21:05:22 2017 -0400

    Work on converter

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Date:   Fri Mar 17 08:40:37 2017 -0400

    Site updates

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Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 08:36:39 2017 -0400

    STU3 structs working!

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Date:   Fri Mar 17 07:05:54 2017 -0400

    Format test

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    Merge tests for STU3

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Merge: d5a5a60 899ed25
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Date:   Fri Mar 17 06:59:20 2017 -0400

    Merge branch 'master' into dstu3_latest_structs

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Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 14 12:04:37 2017 -0400

    Latest fixes

commit ae46ad53d2075e66e3c58c1e626652b4e144f20c
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 14 06:51:59 2017 -0400

    STU3 structs passing

commit ec3b62d31131d303001f8574c58fb7a8b8194f68
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 22:20:05 2017 -0400

    Fix some tests

commit 933f9b08c32dd8671638f406a0966c5ee07d86a1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 21:18:03 2017 -0400

    Fix test

commit 2a3ad0b422f58cfffea966a7005c6a3d86d189da
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 21:07:33 2017 -0400

    Resolve compile issues in STU3

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Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:51:35 2017 -0400

    FIx compilation error

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Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:48:13 2017 -0400

    Another STU3 struct fix

commit 6acd25458aad89aaff94768c824d4d1fcdac97ba
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:41:16 2017 -0400

    Work on STU3 structs

commit 90a476dba2665a129572ad5cbbd8dd29afd9d4c8
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:28:32 2017 -0400

    Resolve JDK8 dependencies

commit 783bc1519971e977fe7139aa1d3a2e7f37940a63
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:20:57 2017 -0400

    Fix some tests

commit 60c379175b689495e65278bb6a237af3de379aa8
Author: James <jamesagnew@gmail.com>
Date:   Sun Mar 12 19:56:29 2017 -0400

    Work on STU3 structs

commit e98c2eed6601f7009e199aca3b82399a3377077c
Author: James <jamesagnew@gmail.com>
Date:   Sun Mar 12 19:41:48 2017 -0400

    Work on DSTU3 structures

commit 3ce909212bf0f11561b8342d406cffcf957afeb3
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 7 21:03:14 2017 -0500

    Work up upgrading structs
2017-03-17 21:06:12 -04:00
James Agnew 899ed2567f Merge pull request #575 from joelsch/large-codesystem-persistence-fix
Revise saveConcept method to use save() instead of saveAndFlush()
2017-03-17 06:52:57 -04:00
James Agnew 0be818c31c Add validation results to oo (#595)
* Add interceptor

* Add changelog entry

* Update changes.xml

Corrected reference to issue 586 (was 585). Corrected order of actions for issues 586 and 595 (was reversed).

* Update changes.xml

Should have been 585 after all. Whoops!

* Update changes.xml

Adding an item for pull request 565 that was previously approved and merged.

* Fixed test with English String in assertion.
2017-03-16 13:31:25 -04:00
James 95ef644612 Missed a param type for updated 2017-03-12 18:50:49 -04:00
James 0e3cc29c50 Add update time to search parameters 2017-03-12 12:13:31 -04:00
James 120227da2f License headers 2017-03-11 14:57:43 -05:00
James 0c6679ac44 JPA server interceptor methods for create/update/delete provided the wrong version ID to the interceptors 2017-03-11 07:57:33 -05:00
James Agnew bcff22c769 Add an interface for the stale search deleter 2017-03-01 19:50:17 -05:00
James Agnew d1d208c6c7 Rename a few reindexing methods to make their names more intuitive 2017-03-01 16:44:48 -05:00
Joel Schneider (NMDP) 2f1662b59f Revise saveConcept method to use myConceptDao.save instead of myConceptDao.saveAndFlush (to avoid overloading CPU with flush computations when persisting large codesystems, e.g. one with 399837 concepts). 2017-02-28 22:43:00 -06:00
James 7ea7bd45cf Make preDelete consistent with postCreate 2017-02-14 21:28:23 -05:00
James Agnew f7187fbc0a Fix another test 2017-02-11 19:39:01 -05:00
James Agnew 79e336025c Fix test 2017-02-11 19:31:00 -05:00
James Agnew 82ac69d86c Throw correct HTTP status when validation fails because of missing ID 2017-02-11 19:22:25 -05:00
James 53f6effd56 Clean up custom seach param code 2017-02-11 18:37:21 -05:00
James f1828d1ca8 Fix handling of filters on valueset expansions 2017-02-10 11:05:59 -05:00
James Agnew 0dd6364fe5 Improve paging in JPA server for _history operation 2017-02-08 21:42:17 -05:00
James ef23b45d25 Custom extension params working now 2017-02-08 19:17:12 -05:00
James Agnew d28122ff3e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-02-07 12:24:35 -05:00
James Agnew ad781334d8 Fix conditional creates updating resource body 2017-02-07 11:36:24 -05:00
James 21ea5a070f Fix test 2017-02-07 08:46:22 -05:00
James d5fbcf8e82 Return an OperationOutcome in the response for a delete in JPA 2017-02-07 07:44:57 -05:00
James 116cb1c8f7 Work on repopulating 2017-02-06 21:57:23 -05:00
James Agnew a760f1df7c Work on custom params 2017-02-05 21:27:07 -05:00
James Agnew 30df29c083 Work on custom params 2017-02-05 21:04:19 -05:00
James 73924199a9 Work on custom search params 2017-02-05 20:34:12 -05:00
James d4dda1dace headers 2017-02-04 18:21:09 -05:00
James 7149d2e053 Merge branch 'custom_jpa_search_params' 2017-02-04 16:34:05 -05:00
James dd0e47afc3 Make projects import cleanly into eclipse 2017-02-04 16:31:18 -05:00
James Agnew 3f8a8cd8aa Merge pull request #548 from sekaijin/cleanup
Cleanup
2017-02-04 16:02:50 -05:00
James 54ac780cd5 Custom params works! 2017-02-04 16:02:00 -05:00
James Agnew c85c2269a1 Work on custom params 2017-02-04 14:41:11 -05:00
James 12dc4d1c11 Work on custom params 2017-02-04 07:14:21 -05:00
James Agnew aa5588826e Work on custom search params 2017-02-02 22:31:34 -05:00
James 97ff79d730 Work on custom params 2017-02-02 20:37:58 -05:00
James Agnew 3191c907a3 Work on JPA 2017-02-02 06:23:28 -05:00
James b4a362b8ee Work in progress 2017-02-01 05:55:35 -05:00
James e5b9aa4536 Bump some dependency versions 2017-01-30 17:59:01 -05:00
James ad324174bd Try to get travis working again 2017-01-30 08:06:31 -05:00
James ce80007f8d Bump spring version and refactor examples 2017-01-29 22:55:22 -05:00
James Agnew 4963f8908b Merge pull request #533 from Robbert1/spring-4.3-compat
correct ordering of codesystem dao types
2017-01-29 17:58:56 -05:00
sekaijin a150a96089 dependencies convergence
correct dependencies convergence
correct version use ${project.version}
2017-01-29 19:22:28 +01:00
sekaijin 23784c1619 remove .settings .project .classpath file of eclipse 2017-01-28 17:13:47 +01:00
James 12598b4e3b Correctly handle declared extensions with multiple possible types
Squashed commit of the following:

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Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 09:04:58 2017 -0500

    FIx test

commit e5876f7d86
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 08:35:38 2017 -0500

    Work on extensison

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    Work on extensions

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    More work on these extensison

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    Work on multitype extensions
2017-01-26 11:07:52 -05:00
James 8e0a904997 Add adapter for IServerOperationInterceptor 2017-01-24 13:34:30 -05:00
James Agnew 344e324929 Fix #544
Squashed commit of the following:

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Author: James Agnew <jamesagnew@gmail.com>
Date:   Tue Jan 24 10:46:56 2017 -0500

    Changes working now

commit 5c752cdace
Author: James <jamesagnew@gmail.com>
Date:   Tue Jan 24 08:43:04 2017 -0500

    Get JPA working with new uuid: logic

commit 127b76884a
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jan 23 21:11:18 2017 -0500

    Fix test

commit 599bbe236c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jan 23 18:42:46 2017 -0500

    Work on #544
2017-01-24 10:47:24 -05:00
James Agnew a63b42d08f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-01-23 17:59:11 -05:00
James Agnew 222333059d Add test 2017-01-21 13:09:33 -05:00
James Agnew bde8aebc5a Merge pull request #467 from Robbert1/transaction-index-links
fix resources links being correctly indexed when linking eachother as part of a single transaction bundle
2017-01-20 19:12:18 -05:00
James Agnew d1542e98c5 JPA server was not correctly validating and expanding SCT codes 2017-01-19 17:37:43 -05:00
James Agnew 64e3435a8e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-01-19 15:50:48 -05:00
James Agnew e342d211d1 Add some logging and a test 2017-01-19 15:50:41 -05:00
James 56a25dc3c6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-01-18 22:18:50 -05:00
James f59ac8cf83 Version bump license header 2017-01-18 22:18:37 -05:00
James Agnew 495e57b4ec Allow processing of transactions without a servlet in context 2017-01-18 22:18:03 -05:00
James Agnew 837b12a690 Docs updates 2017-01-14 11:40:05 -06:00
James Agnew 322051a383 Fix failing tests 2017-01-14 07:55:42 -06:00
James Agnew fa1ad5ba85 Fix #519 - Issues with JPA capabilitystatement related to the _id param 2017-01-13 21:19:19 -06:00
James Agnew 37c40c4f9e Fix #503 - Checking authorization again patient compartment fails with delete operation 2017-01-13 11:06:00 -05:00
James af32c4b7e9 Websockets working once more on the public server 2017-01-12 08:59:51 -05:00
James Agnew a8eb4a1967 More websocket work 2017-01-11 22:12:41 -05:00
James Agnew 47a81ebd8f More websocket work 2017-01-11 21:23:39 -05:00
James Agnew d7c4016896 Websocket work 2017-01-11 21:10:10 -05:00
James 3b41d85952 Server interceptor methods were being called twice unnecessarily by the JPA server, and the DaoConfig interceptor registration framework was not actually useful. Thanks to GitHub user @mattiuusitalo for reporting! Fixes #532 2017-01-11 20:57:39 -05:00
James Agnew 5b7abf15dc Properly purge subscriptions 2017-01-11 18:19:46 -05:00
James Agnew fe24841350 Work on #532 2017-01-09 19:00:56 -05:00
James Agnew c7767937fc License version bumps 2017-01-09 17:48:42 -05:00
James e05b0e5d8a Add test for localizer and add some docs 2016-12-30 08:53:42 -05:00
Waveren, Robbert van 07525db83f correct ordering of codesystem dao types 2016-12-29 12:16:32 +01:00
James b448e13edd Version bump to 2.3 2016-12-20 19:01:31 -05:00
James 0ec61533a8 Publish 2.2 2016-12-20 19:00:37 -05:00
James Agnew 750d6d4655 Switch public server to use CapabilityStatement for metadata return type 2016-12-20 15:35:54 -05:00
James 7838d511d0 Fix typo in IHttpResponse 2016-12-19 11:29:05 -05:00
James Agnew 74a73e74c5 Dependency version bumps 2016-12-14 09:21:00 -05:00
jamesagnew a77c4270ae Generate schemas directly into class folder 2016-12-11 21:33:33 -05:00
James 901a85880c Update STU3 definitions and being in STU2.1 defs too 2016-12-10 19:51:25 -05:00
James ee63bbea74 Fix #516 - Handle STU3 invalid enum values with an appropriate exception 2016-12-10 14:14:22 -05:00
James 5149e581db Fix #521 - Wrong or missing ID body in update should be an error 2016-12-08 08:31:52 -05:00
James 2457dfd693 Bring back generated creation SQL 2016-12-08 07:07:29 -05:00
James Agnew ffefb79bf1 Fix crash in JPA when _include points to external reference 2016-12-01 12:43:31 -05:00
James Agnew f984ca723b Add unit test 2016-12-01 12:31:19 -05:00
James Agnew 888f42a032 Introduce new CORS interceptor and switch examples to use it 2016-11-21 18:30:51 +01:00
James Agnew 03935be97f Work on common FluentPath interface 2016-11-21 15:52:17 +01:00
James Agnew 5846ce4518 Make the parser configurable so that when parsing an invalid empty value (e.g. {"status":""} parser will either throw a meaningful exception or log a warning depending on the configured error handler. 2016-11-21 14:48:44 +01:00
James Agnew 4ed17457dd Work on CORS 2016-11-17 17:10:52 +01:00
James Agnew ca9223fb70 Add ability to disable stale search expiry 2016-11-17 10:01:23 +01:00
James 6314f5efb3 Fix structuredefinition regression 2016-11-14 12:04:56 -05:00
James 2d7592f7a8 Version bump to 2.2-SNAPSHOT 2016-11-11 22:39:45 -05:00
James 42295caa61 Site changes 2016-11-11 22:30:19 -05:00
James 2dd26b6367 Version bump to 2.1 2016-11-11 15:16:53 -05:00
James Agnew 846aecfe89 Merging #470 2016-11-11 10:45:53 -05:00
James Agnew 01afc49863 Documentation 2016-11-11 10:43:03 -05:00
James ef9f0bc35b Fix unneccesary database flush operation 2016-11-08 22:48:04 -05:00
James a5d5d3e031 Bump FHR version 2016-11-06 17:34:13 -05:00
James Agnew 9f37646518 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-11-03 11:28:24 -04:00
James Agnew 1a24ac2af2 Fix examples 2016-11-03 11:27:51 -04:00
James 3a5a771de7 Fix #484 - Correctly parse resources containing an empty div tag as the narrative 2016-11-03 07:51:11 -04:00
James Agnew f5bec16cb4 Fix tests for #472 2016-10-26 14:10:43 -04:00
James Agnew a246809c92 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-25 11:45:42 -04:00
James Agnew 3de62701cd Remove unused field in JPA server 2016-10-25 11:30:11 -04:00
James ccd304d2cf Add hook 2016-10-22 18:01:27 -04:00
James Agnew 27208127e0 Add test for #438 2016-10-21 11:40:50 -04:00
James Agnew e56c75e80c Switch Android library to use OkHttp by default 2016-10-14 16:15:27 -04:00
Robbert van Waveren 92a070430a fix resources links being correctly indexed when linking eachother as part of a single transaction bundle 2016-10-13 12:03:48 +02:00