0352d48720
Bump copyright message to 2018
2018-01-08 13:52:15 -05:00
b420d02f2a
Fix tests
2018-01-08 08:51:29 -05:00
19c6369175
Test fix
2018-01-08 08:20:39 -05:00
7e2459fbdc
FIx up tests
2018-01-08 08:18:34 -05:00
6fc88caa51
More work on optimizing JPA
2018-01-08 07:15:58 -05:00
abf76a778f
Add some tests for unique search params
2018-01-08 07:15:31 -05:00
377bae8c16
Allow interceptors to modify request contents
2018-01-06 14:27:32 -05:00
0369b7fd70
JPA server cleanup and add some tests
2018-01-05 16:41:18 -05:00
8b38334955
Fix some tests
2018-01-04 18:12:13 -05:00
2f5ce64755
Start work on removing duplicate resource body
2018-01-04 14:45:17 -05:00
b18e71d4f5
Added new callbacks to IServerOperationInterceptor to be invoked before
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other operation methods
2017-12-23 17:13:33 -05:00
eb2d21ac4b
Added ability to create a resthook subscription without returning a payload using an HTTP POST for notification
2017-12-22 17:14:45 -08:00
fe37c87e78
Redirect test output to a file
2017-12-22 16:52:22 -05:00
ce247ce37f
Reuse forks when running surefire
2017-12-22 16:20:21 -05:00
5425172816
More travis fighting
2017-12-22 15:53:08 -05:00
bf3c09f43d
Merge pull request #810 from darktyco/issue-809-date-search-params
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Fixes issue #809 where date search params get deleted upon resource update
2017-12-22 15:43:07 -05:00
56fcdef93a
Try still more to get travis building
2017-12-22 15:10:08 -05:00
a8e5413d1f
Fix two issues found by ErrorProne
2017-12-22 13:47:40 -05:00
18344f2e32
Fixes issue #809 where date search params get deleted upon resource update
2017-12-22 10:35:14 -05:00
1f88823e8b
add some test to check inCompartment rule works for a collection of owners, with Dstu3 and R4 fhir context
2017-12-21 11:42:38 +01:00
502f58022e
Add some sorting tests
2017-12-18 06:03:09 -05:00
8595b7059e
Let's try and get travis passing now
2017-12-15 16:38:32 -05:00
ff477885e1
More fighting with tests
2017-12-13 20:13:18 -05:00
3a6a045d87
Fix two more tests.... grr... This should get appveyor working at least.
2017-12-13 17:52:56 -05:00
cba3b5b6d8
More test fighting...
2017-12-13 15:24:16 -05:00
44ec091b35
Still more test tweaks
2017-12-13 13:29:24 -05:00
3363c5ce1b
Still fighting with tests to get travis happy
2017-12-13 12:13:08 -05:00
1a9b63aed6
Fix tests
2017-12-13 07:55:35 -05:00
96e3135793
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-12-13 07:05:41 -05:00
4ad5033b13
Add tests
2017-12-13 07:05:30 -05:00
0997167d50
Add test cases for DSTU2 custom search params
2017-12-12 22:08:02 -05:00
3e8fc0c89c
Merge branch 'dstu2_custom_structs'
2017-12-12 21:47:05 -05:00
bdf734fc3c
Examples cleanup
2017-12-08 16:33:45 -05:00
c86a2866d8
Reduce search log noise
2017-12-08 14:25:47 -05:00
561dc86eb4
Test updates
2017-12-08 07:46:59 -05:00
7ce70a792d
Add test for #801
2017-12-07 18:17:24 -06:00
e838b0e32d
Remove unneccesary column
2017-12-07 18:17:24 -06:00
ea8ebd88ac
Additional timing tweak to get tests passing across platforms
2017-12-07 11:27:11 -06:00
f4bc82b300
Rename resource ID property to Resource server ID
2017-12-07 07:20:22 -06:00
bbf1151d93
Try to prevent timing failures on Windows
2017-12-07 07:04:26 -06:00
8fae452eaa
A little more test tweaking
2017-12-06 23:42:22 -06:00
36e719f92f
Allow server assigned UUIDs instead of sequential IDs if conigured to do
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so
2017-12-06 23:16:10 -06:00
0fb10b2636
Oops- fix one more test glitch
2017-12-05 14:33:01 -05:00
d00c7dbea8
Giant breakthrough in fixing sporadic test failures!
2017-12-05 12:08:56 -05:00
d710682fed
Fix searching in JPA with _id and _content params
2017-12-05 07:25:34 -05:00
e1c62ef03e
One more test fix
2017-12-05 06:06:09 -05:00
3a7fba6582
Fix 2 tests
2017-12-04 23:20:43 -05:00
863c4b370c
Add some test debug logs
2017-11-25 20:32:42 -05:00
3e296f9d1b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-11-25 17:53:01 -05:00
6afe6804db
Fix #796 - Correctly escape spaces in generated URLs
2017-11-25 17:52:12 -05:00
5b909b4746
Version bump to 3.2.0-SNAPSHOT
2017-11-24 13:32:47 -05:00
584ba1eec4
Fix a crash on _include which doesnt find any matches
2017-11-24 12:22:26 -05:00
42dd34252d
Version bump to 3.1.0
2017-11-23 13:27:21 -05:00
94be52304b
Fix tests
2017-11-23 11:50:30 -05:00
fc991a3333
Fix tests
2017-11-23 11:36:20 -05:00
ffac599a30
Credit and tests for #762
2017-11-23 06:42:10 -05:00
9b246852ef
Add test for #762
2017-11-22 19:45:36 -05:00
98b2549135
Formatting
2017-11-22 19:45:18 -05:00
be76b90e7a
Test formatting only
2017-11-22 19:22:32 -05:00
3aebfb575a
Merge pull request #756 from alvinleonard/751-fix-deletebyurl
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Fix deleteByUrl to respect InCompartment Authorization
2017-11-22 19:19:32 -05:00
a4cbde8269
Prevent a spurious test failure
2017-11-22 18:45:54 -05:00
4042a3a353
Prevent accidental deletion of deeply nested resources in JPA server
2017-11-22 18:17:35 -05:00
a87323fa08
Add tests
2017-11-17 09:53:44 +01:00
0d0300623f
Streamline search coordinator to improve performance
2017-11-15 18:31:03 +01:00
6ca1498277
Fix tests for spring boot
2017-11-13 15:49:12 -05:00
49f4ac4fc5
Merge branch 'master' into analyzer-def-using-search-mapping
2017-11-13 13:32:40 -05:00
32a4a081d9
More test work -- Ahhhhh travis grr
2017-11-08 20:01:54 -05:00
f91977cbac
Beef up logging in tests
2017-11-08 16:53:39 -05:00
395c8b6acc
Add test for #773
2017-11-07 09:58:42 -05:00
37c8e6c645
Add test for #751
2017-11-05 18:52:28 -05:00
75bfb6af1b
Add support for Binary X-Security-Context header in server
2017-11-02 11:38:43 -04:00
3cd7c8a61c
Fix tests to work on Windows
2017-10-31 20:38:26 -04:00
5a5933f232
Remove dependencies on StAX on Android
2017-10-30 16:41:31 -04:00
64e120cef8
Custom structs in progress
2017-10-30 16:19:09 -04:00
792035f8af
Add more logging to occasional failing test
2017-10-26 21:45:50 -04:00
f475483e9b
Test fix
2017-10-26 12:05:45 -04:00
d461567433
Allow cache-control to be used with CORS
2017-10-26 09:08:10 -04:00
15ba0dff03
Clean up email subscription type
2017-10-26 06:02:12 -04:00
59975948b2
Test fixes
2017-10-22 21:56:44 -04:00
33f9437472
Try to get tests passing under load
2017-10-21 16:35:47 -04:00
b79dd75fce
Update to Spring 5
2017-10-19 07:40:43 -04:00
a265de8649
Validation fixes for QuestionnaireResponse validation
2017-10-18 11:59:22 -04:00
90ecaef87c
Allow Fulltext search Svc to be null
2017-10-17 16:43:03 -04:00
73382d85ca
Fix #761 - Restore codesystem package from DSTU3 and add unit tests to
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verify existence
2017-10-17 15:18:36 -04:00
0959156a4a
Faster processing for mandatory count searches
2017-10-17 14:11:05 -04:00
8b7723b6e8
Make sure a transaction is active when activating subscriptions
2017-10-16 21:28:19 -04:00
175f9dfc5a
Remove dependency on StAX for XML parsing in DSTU2 Xhtml type
2017-10-16 17:22:50 -04:00
a782bd7630
Fix a number of problems reported by ErrorProne
2017-10-16 10:00:27 -04:00
9ca85b4cf3
Re-enable errorprone on standard hapi fhir build. woohoo!
2017-10-15 11:27:30 -04:00
9abc75dc32
Fix another test
2017-10-13 11:03:43 -04:00
290894557d
Optionally require JPA server to collect count information even for
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large searches
2017-10-13 06:31:37 -04:00
9b31741147
Correctly process ifMatch in Bundle entries for JPA server transaction
2017-10-11 13:00:37 -04:00
78b7188fbc
Fix validation error when Bundle has no type
2017-10-11 10:20:12 -04:00
fddda443a2
Remove hamcrest-date library that caused conflicts
2017-10-11 06:33:15 -04:00
31fb1236a1
Reuse bundle ID when returning query cache results
2017-10-11 06:05:14 -04:00
2114dd7706
We need to set the resource id to the entity id after the update entity.
2017-10-11 15:09:41 +11:00
6551eb0a4e
Fix deleteByUrl to respect InCompartment Authorization
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Moved the assignment of the resource to delete before the actual delete as it will be used by the authorization to determine if this resource is in the compartment.
2017-10-11 13:40:03 +11:00
86fb1de3ae
rename file
2017-10-09 18:34:49 +02:00
65c3a316f2
move out the analysers definitions from entity classes
2017-10-09 18:34:03 +02:00
bacd0bfbbb
Squashed commit of the following:
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commit 7ff895de77c9fee23e48c796e19458eb2787d30cff85503acb
2017-10-06 15:33:24 -04:00
b4127674e4
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-10-05 13:42:31 -04:00
0ab8a9a0ba
Fix #744 - Long search URLs on Derby shouldn't cause a failure
2017-10-05 13:41:22 -04:00
ce720f5601
Add support for Cache-Control header in JPA server and client
2017-10-05 13:38:53 -04:00
4d1ab2734f
Use correct parameter name for expand operation
2017-10-02 19:21:52 -04:00
56a71f9222
Performance enhancements to JPA
2017-09-29 09:28:47 -04:00
9ac6014a3c
Add test logging
2017-09-29 09:11:54 -04:00
87383ad802
Version bump to 3.1.0-SNAPSHOT
2017-09-27 21:23:34 -04:00
ac7074ffdd
More notes
2017-09-26 19:05:53 -04:00
e19c13fa6f
Prepare 3.0.0 release
2017-09-24 17:55:16 -04:00
49bdaa1a45
Version bump to 3.0.0
2017-09-23 17:31:39 -04:00
4f8a2d36f5
Fix import statements
2017-09-23 11:09:26 -04:00
478dc1d507
Create model for subscription messages
2017-09-23 10:14:50 -04:00
c115fbfd15
Add serializable message type
2017-09-23 07:42:29 -04:00
be07ebc4ef
Subscription refactoring
2017-09-21 08:33:20 -04:00
5f89f6ed16
Improve test logging
2017-09-21 06:13:30 -04:00
2fa912a43f
Use serialized messages for queues
2017-09-19 22:01:36 -04:00
d65664cd9b
Work on test
2017-09-18 18:06:27 -04:00
1402c5e4e2
Remove some useless logging
2017-09-18 18:04:08 -04:00
79cb251b7e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-09-17 20:05:59 -04:00
fc7144ee03
Work on JPA optimization
2017-09-17 20:05:28 -04:00
feb9852a25
Allow disabling :missing indexes in JPA
2017-09-17 18:37:09 -04:00
9eb2848aca
One more test fix
2017-09-16 19:48:01 -04:00
78929752af
License headers
2017-09-16 19:46:19 -04:00
36d9180570
Fix broken tests
2017-09-16 17:47:06 -04:00
7a878152c4
Refactor subscriptions to use a single codebase across versions
2017-09-16 15:03:22 -04:00
7d4bb8b9cb
Add tests
2017-09-15 06:18:26 -05:00
1ac45e27c6
Deprecate subscription settings in DaoConfig that are no longer used
2017-09-15 05:57:42 -05:00
e94d639d29
Refactor websockets to use queuing mechanism
2017-09-14 21:29:57 -05:00
97b44965ce
Lots of work on new subscription model
2017-09-13 19:05:29 -07:00
415f2bc72d
Merge branch 'master' into con16_subscriptions
2017-09-10 08:49:28 -07:00
f216e0938d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-09-10 07:24:09 -07:00
85aef0a853
Refactor tests
2017-09-10 07:23:57 -07:00
805fbad6ce
All recreating code systems with previously used URL
2017-09-09 21:49:26 -07:00
2bb01451ea
Cleanup of validator
2017-09-09 20:55:00 -07:00
3bd7810bd7
Subscription refactor started
2017-09-09 14:25:05 -07:00
4b78fd8029
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-09-09 17:23:32 -04:00
9097acfc0c
updates to subscription
2017-09-09 17:20:18 -04:00
736e037b1a
Ongoing work on subscriptions
2017-09-09 09:53:51 -07:00
836d4d051b
Work on IG Pack uploading
2017-09-07 20:33:19 -07:00
df3aa86471
Use higher thread count for subscription processor by default
2017-09-06 11:08:43 -07:00
989246f0da
Include Location header details in non-verbose response for client
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interceptor
2017-09-06 06:26:41 -07:00
7eb86d3eaa
Work on tests
2017-09-05 19:00:42 -07:00
c32e8d42b3
Fix more tests
2017-09-05 18:04:46 -07:00
118c40beeb
Fix a few tests
2017-09-05 17:52:14 -07:00
984c0c387c
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-09-05 17:34:02 -07:00
2aa538bd56
Add ability for system to track unique constraints
2017-09-05 17:33:19 -07:00
0eea7b8f1f
Fix android build hopefully
2017-09-01 06:39:55 -04:00
c6ddf89557
Allow validation of subscriptions to be overridden
2017-08-31 22:40:53 -04:00
78fd13c2f4
Add config item to auto create references in JPA
2017-08-31 08:57:51 -04:00
a24cbd7da5
uto register subscriptions on startup
2017-08-31 06:46:59 -04:00
cae21f4898
Update syntax highlighter to not use tables
2017-08-28 10:26:07 -04:00
ff8b5607f3
More test cleanup
2017-08-24 22:19:12 -04:00
c31ebebdea
Revert last perf change
2017-08-24 15:25:53 -04:00
18213f1af9
Try to speed up terminology reindexing
2017-08-24 15:04:53 -04:00
dbe35b9be2
More tweaks to concept refreshing
2017-08-24 14:35:45 -04:00
64e03997aa
Additional logging in term service
2017-08-24 13:36:20 -04:00
1ec14f4a31
Small perf improvement for JPA terminology
2017-08-24 13:07:05 -04:00
83171292df
Try to get tests passing
2017-08-22 08:44:35 -04:00
46c04488de
Use correct verb for rest hook notifications
2017-08-19 19:14:52 -04:00
e3a28e2ff5
Split out delivery and processing channel for subscriptions
2017-08-19 12:15:19 -04:00
7764484f44
Try to prevent test failure under load
2017-08-18 13:57:43 -04:00
45ddf372ce
Try to fix broken test
2017-08-18 07:07:39 -04:00
67a3b60d58
Add hook to rest hook subscriber
2017-08-17 06:40:43 -04:00
572a37593a
Increase timeout
2017-08-16 09:34:27 -04:00
1c2af596d4
Add logging to test
2017-08-15 11:34:05 -04:00
a8c91ce6f5
Try to get travis building again
2017-08-15 10:30:00 -04:00
f04b080d50
Honour headers in rest hook subscribers
2017-08-15 07:42:18 -04:00
c9487c974e
More work fixing tests
2017-08-14 22:08:21 -04:00
94953e8a5c
Merge in latest work on subscriptions and GraphQL
2017-08-14 22:00:59 -04:00
b9494c179a
Squashed commit of the following:
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Merge branch 'master' into hapi3_refactor
commit 3b80779fd31f534985e8356d9acaf7#705 , #708 , and #710
Merge branch 'master' into hapi3_refactor
commit 1f534985e87c39a47852dedd3d635b#695
Merge branch 'master' into hapi3_refactor
commit 7c39a47852e0ffb84d216efafe62f1#688
Merge branch 'master' into hapi3_refactor
commit e0ffb84d2152388c11c1d19b00ff0952388c11c15413b276af209752cd634543408dc8ee360f53761a95ba3b65f0d8802681a4cbda357e0e2cecfbd040317a650de7f8f8c30d43c9003258602857f1e2e326a7b0cd#686 and forward port the fix to R4 validator
commit 96543c39923fb75aa61a9901b802c43fb75aa61ab02fbb68041ae37b0db372b88849b3e5f6c35aea0b513b0845defea69aa39ae7295705ebd3eeb5ee92224c2532c52cacf71bb405e51773c3ddf04e25cb2cea54d7c3ddf04e25b13333c3c02e60ff7521a92ace2e0d3196db96d11a6b3ea8673196db96d1bd4e1d33886464ce93040059f2e48e6c2e87e8cc11cab9750434ec6b88076c47bd4c5134ec6b8807f8e647511bc520e60ac1f8e647511bc520e60ac1f1d2ee90929281ccafc3ea1264cd8e294d080bd3ea1264cd8efbe2f98a02b2bef471000a4dcc32ecb2bef471008f76e4e463
2017-08-14 21:35:56 -04:00
04f16294aa
Fix subscriptions
2017-08-13 16:02:35 -04:00
be5c5ebecd
Merge in HAPI 3.0.0 working branch!
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Squashed commit of the following:
commit 12f89a423af6868cce5c3b80779fd31e158311d8#710
Merge branch 'master' into hapi3_refactor
commit 3b80779fd31f534985e8356d9acaf7#705 , #708 , and #710
Merge branch 'master' into hapi3_refactor
commit 1f534985e87c39a47852dedd3d635b#695
Merge branch 'master' into hapi3_refactor
commit 7c39a47852e0ffb84d216efafe62f1#688
Merge branch 'master' into hapi3_refactor
commit e0ffb84d2152388c11c1d19b00ff0952388c11c1209752cd634543408dc8ee360f53761a95ba3b65f0d8802681a4cbda357e0e2cecfbd040317a650de7f8f8c30d43c9003258602857f1e2e326a7b0cd#686 and forward port the fix to R4 validator
commit 96543c39923fb75aa61a9901b802c43fb75aa61ab02fbb68041ae37b0db372b88849b3e5f6c35aea0b513b0845defea69aa39ae7295705ebd3eeb5ee92224c2532c52cacf71bb405e51773c3ddf04e25cb2cea54d7c3ddf04e25b13333c3c02e60ff7521a92ace2e0d3196db96d11a6b3ea8673196db96d1bd4e1d33886464ce93040059f2e48e6c2e87e8cc11cab9750434ec6b88076c47bd4c5134ec6b8807f8e647511bc520e60ac1f8e647511bc520e60ac1f1d2ee90929281ccafc3ea1264cd8e294d080bd3ea1264cd8efbe2f98a02b2bef471000a4dcc32ecb2bef471008f76e4e463
2017-08-13 14:39:47 -04:00
1e158311d8
Fix tests for #710
2017-08-13 13:43:31 -04:00
b16c94bb0a
Merge pull request #710 from jamesagnew/issue675-activate-subscriptions
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Fix for rest-hook subscriptions are not becoming active #675
2017-08-13 10:55:26 -04:00
6efafe62f1
Merge pull request #688 from CarthageKing/bugfix-issue659
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Correctly serialize baseurl/FooResource references
2017-08-12 14:51:46 -04:00
eea44b4b9a
Fix for rest-hook subscriptions are not becoming active #675
2017-08-10 15:17:31 -07:00
cb2cea54d7
Merge pull request #693 from jamesagnew/ConcurrentModificationRestSubscriptionFix
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Fix to prevent rare Concurrent Modification Exceptions
2017-07-26 17:26:45 -04:00
274e218494
Fix #696 : Corresctly handle negative numbers
2017-07-26 16:59:35 -04:00
42a81f4a85
Fix some unit tests
2017-07-24 06:06:27 -04:00
f5f1f5bd67
More work on detecting deadlocks
2017-07-21 18:40:40 -04:00
fa050c4665
Restore random connection count to tests
2017-07-21 08:12:22 -04:00
a13c78d6cc
FIx deadlock in transaction processing, and put transaction outcome
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in the right spot
2017-07-21 07:39:11 -04:00
6a178b08bd
Adjust tests
2017-07-20 15:24:06 -04:00
0f50eae640
Remove an unneeded log entry
2017-07-20 15:23:33 -04:00
82e2aadf86
Adjust for postgres
2017-07-20 14:45:42 -04:00
49ddf76a5d
Reduce stress test impact
2017-07-20 14:18:26 -04:00
722eab62f2
Avoid opening two transactions for paging requests
2017-07-20 14:03:11 -04:00
2b72bb6c2f
One more deadlock
2017-07-20 13:44:09 -04:00
82171da0cc
One more deadlock
2017-07-20 11:19:53 -04:00
9d08e1e211
Fix deadlock
2017-07-20 11:00:17 -04:00
517fafbd0a
Add check
2017-07-20 10:18:46 -04:00
a49e009cba
Fix to prevent rare Concurrent Modification Exceptions
2017-07-17 15:10:38 -07:00
11aa1c5a9e
fix for #659
2017-07-10 18:10:31 -05:00
d3fa442958
Skip stress tests on Travis
2017-07-05 09:44:03 -04:00
c1d06084b7
Avoid deadlock in JPA server when creating a large number of resources
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and using the RequestValidatingInterceptor
2017-07-04 21:53:26 -04:00
294d080bd3
Add config setting for JPA resource counts in metadata
2017-07-01 16:28:42 -04:00
73a8cf1fca
Don't allow creating resources with references to deleted resources
2017-06-30 22:20:43 -04:00
9270afe410
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-06-30 21:32:10 -04:00
dd7b1b28c2
Fix failing tests
2017-06-30 21:32:01 -04:00
12acb3443e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-06-30 21:04:36 -04:00
6e181b140d
Correct an issue when processing transactions in JPA server where updates and
...
creates to resources with tags caused the tags to be created twice in the
database. These duplicates were utomatically filtered upon read so this issue
was not user-visible, but it coule occasionally lead to performance issues
if a resource containing multiple tags was updated many times via
transactions.
2017-06-30 21:00:25 -04:00
0098a21d7a
Add license header
2017-06-30 16:29:25 -04:00
c9fcef0372
Clean up handling of searches nested in batch and transaction
2017-06-30 16:20:32 -04:00
28a5b92fe2
Enforce a hard limit on meta size
2017-06-30 09:58:32 -04:00
d626c58067
Dont fail on cleanup
2017-06-30 08:42:11 -04:00
b44bdeec88
Clean up rest hook interceptor a bit
2017-06-30 07:24:33 -04:00
d81565b87c
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-06-29 22:16:46 -04:00
dfd37c69d8
Add tests
2017-06-29 22:16:39 -04:00
7834bb2625
Do not load results into the database in JPA if there is no paging
...
provider
2017-06-29 22:15:23 -04:00
674424a30b
Add tests
2017-06-29 21:34:56 -04:00
10ff2dd16c
Add test
2017-06-28 19:54:24 -04:00
3ed12ce944
Improve performance of JPA searches by using Hibernate ScrollableResults
2017-06-28 18:13:44 -04:00
0a4dcc32ec
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-06-27 21:13:40 -04:00
9939785713
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-06-27 21:13:04 -04:00
a0004c9166
Fix issue in calling JPA server transactions programmatically where
...
resources
are linked by object reference and not by ID where indexes
were not correctly
generated. This should not affect most users.
2017-06-27 21:12:20 -04:00
6d55ef59a6
Comment cleanup
2017-06-26 06:23:03 -04:00
0b578e3b0b
Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir into validate-subscription-criteria
2017-06-19 14:13:50 -07:00
e147cf321d
Fix #674 - Avoid duplicates in $everything query
...
Squashed commit of the following:
commit f3097f423fa4b8161597fe47d1e8644fdfe7a4e8571045b63d526a1fa7d0cebe881a1555a67ae055cebe881a15b3b9273ca75789cd2a46#674
commit b3b9273ca7#674
commit 55a67ae055
2017-06-19 13:56:38 -04:00
ad3d5489ea
Fixed FHIR subscriptions with criteria previously limited to 10, added fhir criteria validation before create/update, added dstu2 configurations
2017-06-16 14:25:57 -07:00
10fd88bfec
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-06-16 10:53:32 -04:00
e27ceead55
Fix test
2017-06-16 10:53:25 -04:00
76e3428d33
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-06-16 10:35:57 -04:00
1047c63f3c
Add missing commit for JPA maximum fetch size
2017-06-16 10:35:39 -04:00
b474a1f2ef
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-06-16 10:00:27 -04:00
507cac3127
Respect prefer header on transaction processing
2017-06-16 09:52:12 -04:00
40a70b874c
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-06-16 09:49:06 -04:00
d40c5fa5e3
Add DAO setting to specify maximum query size
2017-06-16 09:41:45 -04:00
69849dd3c5
Optimize queries in JPA
2017-06-14 08:35:41 -04:00
d59b832e74
Merge branch 'master' into minute_precision_in_searchparams
2017-06-12 11:50:01 -04:00
a50a86d9af
Fix crash in JPA server if numeric search parameter has no value
2017-06-11 09:16:48 -04:00
404037b441
Fix some compile issues
2017-06-09 19:37:11 -04:00
c2e5fa3f18
Fix #667 - When using the AuthorizationInterceptor with the JPA server, when a client is updating a resource from A to B, the user now needs to have write permission for both A and B
2017-06-09 11:48:17 -04:00
14edc79ac1
Version bump to 2.6-SNAPSHOT
2017-06-09 07:28:29 -04:00
8b5209ff67
Version bump to 2.5
2017-06-08 06:34:44 -04:00
b6e9a753ca
Merge pull request #660 from HHSIDEAlab/fix-race-condition-in-if-none-exists
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Hacky but workable fix for race condition surfaced by If-None-Exists creates
2017-06-07 21:51:05 -04:00
4caa5dfa8d
Merge pull request #656 from aehrc/feature/scalable_searchbuilder
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Improve SearchBuilder query generation for code:modifier searches
2017-06-07 21:35:50 -04:00
7c6bb01a8b
Don't allow JPA server to save duplicate or empty tags, and fix #664 by
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preventing multiple threads from loading structure definitions for
validation at the same time
2017-06-06 16:44:13 -04:00
aa134fc423
Hacky but workable fix for race condition surfaced by If-None-Exists creates.
...
Some notes from other attempts I made to fix this in a less hacky way:
* Tried to @Autowire myResourceDaos from a setter (rather than using the annotation on a field), and initialize myResourceTypeToDao in that setter, instead. Couldn't get it to work: Spring started throwing odd bean dependency errors. Don't really understand why.
* Tried to move the exceptions being thrown on null getDao(Class) results into that method, but that was breaking a test case. Didn't investigate why.
2017-06-01 03:17:38 -04:00
52a5fcce17
Adding logging
2017-05-30 15:39:33 -04:00
97c83cd8f0
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-05-30 10:05:34 -04:00
3db4091601
Add a null check
2017-05-30 10:05:27 -04:00
6d59b0f5e0
Indexing logging
2017-05-30 10:01:33 -04:00
d0a927ae3f
use disj. of AND and IN for code:modifier searches
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Without this, OR conditions with too many disjuncts are generated which can lead to
failures in the underlying database code generation.
2017-05-29 14:57:16 +10:00
ba40f44d27
Properly index decimal datatype
2017-05-26 06:39:38 -04:00
2fa7aedf63
Fixed the resource type comparison to not use startsWith
2017-05-25 16:47:09 -07:00
b96932a5c5
Fix dependency on new version of commons-codec
2017-05-25 15:24:47 -04:00
e2b329382a
Add some logging to searches
2017-05-25 08:31:29 -04:00
32de48f392
Fix broken tests
2017-05-24 15:50:53 -04:00
5bdd10c7ab
Include patient in $everything even if there are no other resources
2017-05-24 14:24:01 -04:00
3f712fdf8a
POM updates
2017-05-22 17:25:05 -04:00
d54b62ffe4
Fix compile errors
2017-05-22 16:42:51 -04:00
1ec180628f
JPA server now has configurable properties that allow referential integrity to be disabled for both writes and deletes. This is useful in some cases where data integrity is not wanted or not possible. It can also be useful if you want to delete large amounts interconnected data quickly.
2017-05-22 15:34:44 -04:00
a834770e38
A bit more cleanup for #646
2017-05-22 08:13:00 -04:00
b71ba86a3a
Update copyright per plugin
2017-05-21 16:37:27 -04:00
a13247ad4b
Updates for #646
...
Squashed commit of the following:
commit 9d6d5e92dabb75c4eb185b061d20f487b8856795
Author: James <jamesagnew@gmail.com>
Date: Sun May 21 15:27:26 2017 -0400
Get subscriptions working
commit 6bccdd7594f0a4f802212e11cc823f7a92dd9a5c
Author: James Agnew <jamesagnew@gmail.com>
Date: Sun May 21 14:37:40 2017 -0400
Work on subscription
commit 129f4c9d0d1e6c8fa56dbc5cf78a34c1d6659705
Author: James <jamesagnew@gmail.com>
Date: Sat May 20 19:58:11 2017 -0400
Work on merging subscription
2017-05-21 15:28:08 -04:00
5ef8b70a1f
Merge branch 'master' into master
2017-05-20 18:25:02 -04:00
20c14fe8a6
Make sure we don't update unchanged resources in a transaction
2017-05-20 17:55:09 -04:00
f6ee4db598
Process :missing qualifier on date params
2017-05-19 20:36:06 -04:00
7a24bff0eb
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-05-19 17:15:07 -04:00
a7bb01393a
Add tests
2017-05-19 17:14:50 -04:00
2143c6906b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-05-19 10:13:45 -04:00
7c48eadf38
Add tests
2017-05-19 06:50:01 -04:00
8701e3ad61
Change millis to int for stopwatch
2017-05-18 22:06:40 -04:00
9ea8e7822a
More fixes for chaining on custom search params
2017-05-18 17:16:30 -04:00
d58a9e7ed4
Further fixes to searching on a chained value
2017-05-18 10:48:05 -04:00
a92d80d860
Correctly encode extensions on the root of a resource with type
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reference
2017-05-17 12:40:10 -04:00
7bb9e5edd9
Custom search parameters could not chain an extension param
2017-05-17 10:46:22 -04:00
5ac91bfb94
Add a test for custom params
2017-05-17 08:19:11 -04:00
b2996d3550
Fix interceptor behaviour
2017-05-15 23:12:50 -04:00
d87b4f2062
Re-enable daoconfig interceptors
2017-05-15 22:11:29 -04:00
da2d7c3bc3
Clean up testpage overlay
2017-05-14 11:27:52 -04:00
5b282c3b25
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-05-14 06:39:37 -04:00
897c65e818
CLI and HttpClient cleanup
2017-05-14 06:39:23 -04:00
cf2d38498d
Header update
2017-05-10 02:12:22 -04:00
95659bed3a
Fix tests
2017-05-10 08:11:23 +02:00
663125fe94
Resthook subscription implementation, event driven websocket subscription implementation, Tminus subscription support, notification on delete
2017-05-09 15:08:59 -07:00
579e5da5ff
Make sure we reuse searches
2017-05-09 11:47:05 +02:00
262e39e57a
Work on term
2017-05-06 11:41:30 +02:00
ef772547c3
Fix an issue in the JPA server if a resource has been previously saved containing vocabulary that is no longer valid. This only really happened if you were using a non-final version of FHIR (e.g. using DSTU3 before it was finalized) but if you were in this situation, upgrading HAPI could cause you to have old codes that no longer exist in your database. This fix prevents these from blocking you from accesing those resources.
2017-05-06 10:51:17 +02:00
e53d747f2b
Get large searches working on Oracle
2017-05-05 15:45:45 +02:00
3780248a2f
Update JPA defs based on new unit test
2017-05-04 06:56:28 -04:00
fdd82e0b2a
Shorten column names in Search table for JPA
2017-05-04 05:51:02 -04:00
c5c6c5eff6
Fix deadlock regression in JPA 2.5-SNAPSHOT
2017-04-29 07:20:43 -04:00
f21ab8bfe6
Add synchronization to SP registry
2017-04-24 07:40:53 -04:00
93b61aac90
Force resource updates when reindexing
2017-04-23 22:20:58 -04:00
bb9cd7c198
Add configuration property to DSTU3 FhirInstanceValidator to allow client code to change unknown extension handling behaviour.
2017-04-23 19:28:45 -04:00
9c595e18f9
Ignore updates that don't actually change anything
2017-04-23 15:04:19 -04:00
841cfb8cf3
Fix test failures from search cleanup
2017-04-22 13:08:29 -04:00
fa2950dacb
Fix tests for expiring search results
2017-04-22 08:50:51 -04:00
dd5580ed2d
Search reuse merged in
2017-04-22 07:47:05 -04:00
405ac50351
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-04-22 06:34:36 -04:00
c311a0b3bf
Work on JPA performance
2017-04-22 06:34:24 -04:00
c09e26e28f
Clean up calls in JPA server for ID
2017-04-22 06:31:55 -04:00
716fa56b8f
Merge branch 'jpa_perf_enhancements'
2017-04-21 06:30:22 -04:00
cbc652d226
Version bump to 2.5-SNAPSHOT
2017-04-20 16:13:15 -04:00
282f90d174
Perf work
2017-04-20 05:59:10 -04:00
9d3d15ce6f
Version bump to 2.4
2017-04-19 21:38:36 -04:00
552bd90d59
More perf work
2017-04-19 18:08:38 -04:00
cc526f6d99
Upgrade to STU3
2017-04-18 21:58:23 -04:00
61a61cddee
More perf work
2017-04-18 21:02:25 -04:00
077676fd03
Bring DSTU3 structs up to FHIR R3
...
Squashed commit of the following:
commit 65b70d30c91df2de06679a51323e0340aebba0a7#610
2017-04-18 07:48:38 -04:00
4bf97e836a
Fix memory leak
2017-04-18 06:13:48 -04:00
7f2cf17f9f
Fix perf issue
2017-04-17 17:29:32 -04:00
5adc09ad56
perf enhancements finally working
2017-04-17 16:56:53 -04:00
fbbe792726
Perf work
2017-04-17 14:00:36 -04:00
08ec97e78a
More work on perf
2017-04-16 15:57:58 -04:00
217d9f8176
More perf work
2017-04-16 14:46:15 -04:00
62ece72e6f
More perf work
2017-04-16 12:08:23 -04:00
913fd422a1
Merge branch 'master' into jpa_perf_enhancements
2017-04-14 11:30:19 -04:00
f6acb5633b
Work on perf
2017-04-14 09:50:05 -04:00
54055f5bfb
Support extensions pointing to references for JPA custom search params
2017-04-14 07:26:49 -04:00
1039bbec97
More perf work
2017-04-14 07:25:01 -04:00
23b7de5dd8
More perf work
2017-04-12 18:28:10 -04:00
81aae2b672
More perf work
2017-04-11 06:56:17 -04:00
cba5aeb47b
More perf work
2017-04-10 17:55:50 -04:00
0a8900ee78
Perf updates possibly working?
2017-04-10 16:29:24 -04:00
aa02dd5037
More perf work
2017-04-10 08:05:25 -04:00
04468c8352
More perf work
2017-04-09 21:52:55 -04:00
e32d6bb56e
More perf work
2017-04-09 20:06:56 -04:00
bf0f1421b3
Work on perf
2017-04-09 19:13:55 -04:00
fa435fb8b2
More perf work
2017-04-09 11:48:56 -04:00
c5c154346e
More work on perf
2017-04-08 22:21:57 -04:00
801ae7cb75
NOFT test passing
2017-04-08 21:19:10 -04:00
90a4e2def2
More work on perf improvements
2017-04-08 19:46:51 -04:00
08e5681d8b
Work on perf
2017-04-08 15:12:10 -04:00
dd84fced5e
Merge branch 'master' into jpa_perf_enhancements
2017-04-08 06:54:13 -04:00
0a61096f6f
Add JPA utility method
2017-04-07 11:14:48 -04:00
8284fcab1b
More work on performance
2017-04-07 08:37:48 -04:00
660c2bde72
More work on perf
2017-04-06 22:23:20 -04:00
f48d0d677b
More work on performance
2017-04-06 12:50:36 -04:00
1581cdf9a8
Work on perf
2017-04-04 08:26:04 -04:00
233eb54710
Work on perf
2017-04-03 22:05:53 -04:00
9b1366734a
Merge branch 'master' into jpa_perf_enhancements
2017-04-03 15:20:55 -04:00
6ab1cb4c2e
Fix compile issues from new version of errorprone
2017-04-03 14:43:59 -04:00
efaa7a74cb
Work on perf enhancements to JPA
2017-03-30 19:58:32 +08:00
ce73e89715
For bit of work on JPA perf enhancements
2017-03-30 06:28:34 +08:00
2c9a6e65e7
Fix #534 : Add setting for logical references to DAOConfig
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Merge branch 'master' into issue534
2017-03-30 03:21:50 +08:00
14d861992c
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-03-29 15:29:10 +08:00
c6555ddd4f
DaoConfig#setAllowInlineMatchUrlReferences now defaults to true
2017-03-29 15:23:23 +08:00
d9749b652d
Work on issue 534
2017-03-29 15:19:52 +08:00
4748c8ba74
New DSTU2 FhirInstanceValidator bean exposed. ( #611 )
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Merging with master, issue #609 will be closed.
2017-03-28 23:19:20 -04:00
3ecfbf098f
Work on #534
2017-03-27 08:37:31 +08:00
72f682d81e
Refactor search param registry
2017-03-18 19:36:10 -04:00
40848b1beb
Version bump to 2.4-SNAPSHOT
2017-03-18 12:24:39 -04:00
d009e836bb
Fix tests for 2.3
2017-03-18 08:06:18 -04:00
e18ab206d7
Version bump to 2.3
2017-03-17 21:21:59 -04:00
8758b6f3da
Updating to 1.9.0 structures
...
Squashed commit of the following:
commit 81edf46fe02a88851693f958e60855edfe69c04c
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Mar 17 21:05:22 2017 -0400
Work on converter
commit 3342d987008892dd3a75dddd251fe599c31c5a6c
Author: James <jamesagnew@gmail.com>
Date: Fri Mar 17 08:40:37 2017 -0400
Site updates
commit 7dcb63904ece1fcb59a09dc268e8382ac0b75535
Author: James <jamesagnew@gmail.com>
Date: Fri Mar 17 08:36:39 2017 -0400
STU3 structs working!
commit c5aec809e3f19f3fedf0aaaeab8cdd7924c144a2
Author: James <jamesagnew@gmail.com>
Date: Fri Mar 17 07:05:54 2017 -0400
Format test
commit 5033090010e8c93644505bccaa5e41ccbd756485
Author: James <jamesagnew@gmail.com>
Date: Fri Mar 17 07:03:39 2017 -0400
Merge tests for STU3
commit de40a516bfa4d2ab7f5e28e2d95815fde68bd10a
Merge: d5a5a60 899ed25
2017-03-17 21:06:12 -04:00
899ed2567f
Merge pull request #575 from joelsch/large-codesystem-persistence-fix
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Revise saveConcept method to use save() instead of saveAndFlush()
2017-03-17 06:52:57 -04:00
0be818c31c
Add validation results to oo ( #595 )
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* Add interceptor
* Add changelog entry
* Update changes.xml
Corrected reference to issue 586 (was 585). Corrected order of actions for issues 586 and 595 (was reversed).
* Update changes.xml
Should have been 585 after all. Whoops!
* Update changes.xml
Adding an item for pull request 565 that was previously approved and merged.
* Fixed test with English String in assertion.
2017-03-16 13:31:25 -04:00
95ef644612
Missed a param type for updated
2017-03-12 18:50:49 -04:00
0e3cc29c50
Add update time to search parameters
2017-03-12 12:13:31 -04:00
120227da2f
License headers
2017-03-11 14:57:43 -05:00
0c6679ac44
JPA server interceptor methods for create/update/delete provided the wrong version ID to the interceptors
2017-03-11 07:57:33 -05:00
bcff22c769
Add an interface for the stale search deleter
2017-03-01 19:50:17 -05:00
d1d208c6c7
Rename a few reindexing methods to make their names more intuitive
2017-03-01 16:44:48 -05:00
2f1662b59f
Revise saveConcept method to use myConceptDao.save instead of myConceptDao.saveAndFlush (to avoid overloading CPU with flush computations when persisting large codesystems, e.g. one with 399837 concepts).
2017-02-28 22:43:00 -06:00
7ea7bd45cf
Make preDelete consistent with postCreate
2017-02-14 21:28:23 -05:00
f7187fbc0a
Fix another test
2017-02-11 19:39:01 -05:00
79e336025c
Fix test
2017-02-11 19:31:00 -05:00
82ac69d86c
Throw correct HTTP status when validation fails because of missing ID
2017-02-11 19:22:25 -05:00
53f6effd56
Clean up custom seach param code
2017-02-11 18:37:21 -05:00
f1828d1ca8
Fix handling of filters on valueset expansions
2017-02-10 11:05:59 -05:00
0dd6364fe5
Improve paging in JPA server for _history operation
2017-02-08 21:42:17 -05:00
ef23b45d25
Custom extension params working now
2017-02-08 19:17:12 -05:00
d28122ff3e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-02-07 12:24:35 -05:00
ad781334d8
Fix conditional creates updating resource body
2017-02-07 11:36:24 -05:00
21ea5a070f
Fix test
2017-02-07 08:46:22 -05:00
d5fbcf8e82
Return an OperationOutcome in the response for a delete in JPA
2017-02-07 07:44:57 -05:00
116cb1c8f7
Work on repopulating
2017-02-06 21:57:23 -05:00
a760f1df7c
Work on custom params
2017-02-05 21:27:07 -05:00
30df29c083
Work on custom params
2017-02-05 21:04:19 -05:00
73924199a9
Work on custom search params
2017-02-05 20:34:12 -05:00
d4dda1dace
headers
2017-02-04 18:21:09 -05:00
7149d2e053
Merge branch 'custom_jpa_search_params'
2017-02-04 16:34:05 -05:00
dd0e47afc3
Make projects import cleanly into eclipse
2017-02-04 16:31:18 -05:00
3f8a8cd8aa
Merge pull request #548 from sekaijin/cleanup
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Cleanup
2017-02-04 16:02:50 -05:00
54ac780cd5
Custom params works!
2017-02-04 16:02:00 -05:00
c85c2269a1
Work on custom params
2017-02-04 14:41:11 -05:00
12dc4d1c11
Work on custom params
2017-02-04 07:14:21 -05:00
aa5588826e
Work on custom search params
2017-02-02 22:31:34 -05:00
97ff79d730
Work on custom params
2017-02-02 20:37:58 -05:00
3191c907a3
Work on JPA
2017-02-02 06:23:28 -05:00
b4a362b8ee
Work in progress
2017-02-01 05:55:35 -05:00
e5b9aa4536
Bump some dependency versions
2017-01-30 17:59:01 -05:00
ad324174bd
Try to get travis working again
2017-01-30 08:06:31 -05:00
ce80007f8d
Bump spring version and refactor examples
2017-01-29 22:55:22 -05:00
4963f8908b
Merge pull request #533 from Robbert1/spring-4.3-compat
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correct ordering of codesystem dao types
2017-01-29 17:58:56 -05:00
a150a96089
dependencies convergence
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correct dependencies convergence
correct version use ${project.version}
2017-01-29 19:22:28 +01:00
23784c1619
remove .settings .project .classpath file of eclipse
2017-01-28 17:13:47 +01:00
12598b4e3b
Correctly handle declared extensions with multiple possible types
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Squashed commit of the following:
commit d6ea0552b7e5876f7d867e573c2299234b4a0c1c2eb780a690
2017-01-26 11:07:52 -05:00
8e0a904997
Add adapter for IServerOperationInterceptor
2017-01-24 13:34:30 -05:00
344e324929
Fix #544
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Squashed commit of the following:
commit 1ab9b58e9f5c752cdace127b76884a599bbe236c#544
2017-01-24 10:47:24 -05:00
a63b42d08f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-01-23 17:59:11 -05:00
222333059d
Add test
2017-01-21 13:09:33 -05:00
bde8aebc5a
Merge pull request #467 from Robbert1/transaction-index-links
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fix resources links being correctly indexed when linking eachother as part of a single transaction bundle
2017-01-20 19:12:18 -05:00
d1542e98c5
JPA server was not correctly validating and expanding SCT codes
2017-01-19 17:37:43 -05:00
64e3435a8e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-01-19 15:50:48 -05:00
e342d211d1
Add some logging and a test
2017-01-19 15:50:41 -05:00
56a25dc3c6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-01-18 22:18:50 -05:00
f59ac8cf83
Version bump license header
2017-01-18 22:18:37 -05:00
495e57b4ec
Allow processing of transactions without a servlet in context
2017-01-18 22:18:03 -05:00
837b12a690
Docs updates
2017-01-14 11:40:05 -06:00
322051a383
Fix failing tests
2017-01-14 07:55:42 -06:00
fa1ad5ba85
Fix #519 - Issues with JPA capabilitystatement related to the _id param
2017-01-13 21:19:19 -06:00
37c40c4f9e
Fix #503 - Checking authorization again patient compartment fails with delete operation
2017-01-13 11:06:00 -05:00
af32c4b7e9
Websockets working once more on the public server
2017-01-12 08:59:51 -05:00
a8eb4a1967
More websocket work
2017-01-11 22:12:41 -05:00
47a81ebd8f
More websocket work
2017-01-11 21:23:39 -05:00
d7c4016896
Websocket work
2017-01-11 21:10:10 -05:00
3b41d85952
Server interceptor methods were being called twice unnecessarily by the JPA server, and the DaoConfig interceptor registration framework was not actually useful. Thanks to GitHub user @mattiuusitalo for reporting! Fixes #532
2017-01-11 20:57:39 -05:00
5b7abf15dc
Properly purge subscriptions
2017-01-11 18:19:46 -05:00
fe24841350
Work on #532
2017-01-09 19:00:56 -05:00
c7767937fc
License version bumps
2017-01-09 17:48:42 -05:00
e05b0e5d8a
Add test for localizer and add some docs
2016-12-30 08:53:42 -05:00
07525db83f
correct ordering of codesystem dao types
2016-12-29 12:16:32 +01:00
b448e13edd
Version bump to 2.3
2016-12-20 19:01:31 -05:00
0ec61533a8
Publish 2.2
2016-12-20 19:00:37 -05:00
750d6d4655
Switch public server to use CapabilityStatement for metadata return type
2016-12-20 15:35:54 -05:00
7838d511d0
Fix typo in IHttpResponse
2016-12-19 11:29:05 -05:00
74a73e74c5
Dependency version bumps
2016-12-14 09:21:00 -05:00
a77c4270ae
Generate schemas directly into class folder
2016-12-11 21:33:33 -05:00
901a85880c
Update STU3 definitions and being in STU2.1 defs too
2016-12-10 19:51:25 -05:00
ee63bbea74
Fix #516 - Handle STU3 invalid enum values with an appropriate exception
2016-12-10 14:14:22 -05:00
5149e581db
Fix #521 - Wrong or missing ID body in update should be an error
2016-12-08 08:31:52 -05:00
2457dfd693
Bring back generated creation SQL
2016-12-08 07:07:29 -05:00
ffefb79bf1
Fix crash in JPA when _include points to external reference
2016-12-01 12:43:31 -05:00
f984ca723b
Add unit test
2016-12-01 12:31:19 -05:00
888f42a032
Introduce new CORS interceptor and switch examples to use it
2016-11-21 18:30:51 +01:00
03935be97f
Work on common FluentPath interface
2016-11-21 15:52:17 +01:00
5846ce4518
Make the parser configurable so that when parsing an invalid empty value (e.g. {"status":""} parser will either throw a meaningful exception or log a warning depending on the configured error handler.
2016-11-21 14:48:44 +01:00
4ed17457dd
Work on CORS
2016-11-17 17:10:52 +01:00
ca9223fb70
Add ability to disable stale search expiry
2016-11-17 10:01:23 +01:00
6314f5efb3
Fix structuredefinition regression
2016-11-14 12:04:56 -05:00
2d7592f7a8
Version bump to 2.2-SNAPSHOT
2016-11-11 22:39:45 -05:00
42295caa61
Site changes
2016-11-11 22:30:19 -05:00
2dd26b6367
Version bump to 2.1
2016-11-11 15:16:53 -05:00
846aecfe89
Merging #470
2016-11-11 10:45:53 -05:00
01afc49863
Documentation
2016-11-11 10:43:03 -05:00
ef9f0bc35b
Fix unneccesary database flush operation
2016-11-08 22:48:04 -05:00
a5d5d3e031
Bump FHR version
2016-11-06 17:34:13 -05:00
9f37646518
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-11-03 11:28:24 -04:00
1a24ac2af2
Fix examples
2016-11-03 11:27:51 -04:00
3a5a771de7
Fix #484 - Correctly parse resources containing an empty div tag as the narrative
2016-11-03 07:51:11 -04:00
f5bec16cb4
Fix tests for #472
2016-10-26 14:10:43 -04:00
a246809c92
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-10-25 11:45:42 -04:00
3de62701cd
Remove unused field in JPA server
2016-10-25 11:30:11 -04:00
ccd304d2cf
Add hook
2016-10-22 18:01:27 -04:00
27208127e0
Add test for #438
2016-10-21 11:40:50 -04:00
e56c75e80c
Switch Android library to use OkHttp by default
2016-10-14 16:15:27 -04:00
92a070430a
fix resources links being correctly indexed when linking eachother as part of a single transaction bundle
2016-10-13 12:03:48 +02:00
7caf9b5ad9
Fix missing files from commit
2016-10-12 17:29:23 -04:00
f47597d2ec
Rename client param method
2016-10-12 14:51:47 -04:00
8c455d41b6
Rename method from #451
2016-10-12 14:47:51 -04:00
97cd78e6bf
Fix #454 - Chinese characters were not being correctly normalized
2016-10-12 12:50:56 -04:00
09af42200c
License headers
2016-10-11 05:30:22 -04:00
b1266cca71
JPA server shouldn't report a totalCount in Bundle of "-1" when
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there are no results
2016-10-07 17:52:06 -04:00
b37a1edaae
Fix offset error when returning multiple pages in JPA search
2016-10-07 17:42:02 -04:00
0093403860
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-10-07 11:31:12 -04:00
2c4139dc82
Allow fluent client to handle return types other than Parameters when
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invoking operations
2016-10-07 11:29:53 -04:00
f5eda76388
Use new STU3 mimetypes by default
2016-10-06 12:17:59 -04:00
a4975887b8
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-10-06 06:28:06 -04:00
2a5c26b08b
Dependency bump
2016-10-05 05:17:07 -04:00
1fd881d8f8
Return an error if a parameter is called with a chain even though it
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doesn't support chaining
2016-10-04 17:02:13 -04:00
1180860590
Fix test errors
2016-09-30 18:12:33 -04:00
22c2d301dc
Merge remote-tracking branch 'origin/jpa_dep_cleanup'
2016-09-30 14:04:24 -04:00
ff4755fbf3
Fix #441 : Correctly handle search with chains across a field with choice
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type
2016-09-30 14:03:20 -04:00
f39ca7eb2f
Start del cleanup
2016-09-30 08:34:25 -04:00
8a9a031a8d
Fix uploading CLI DSTU2 examples
2016-09-28 16:25:01 -04:00
eba136d706
Correctly handle custom types in programatic access to JPA
2016-09-27 14:22:48 -04:00
c784d5647b
Add unit test
2016-09-25 13:05:24 -04:00
73959e3e26
Remove redundant files
2016-09-21 16:59:43 -04:00
3d73aad275
Fix unit tests
2016-09-21 16:58:57 -04:00
ae97165a0a
Add interceptor method on server which will be called after all other
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processing
2016-09-18 16:08:16 -04:00
b20a5e6b90
Bundles for history did not validate
2016-09-18 10:28:24 -04:00
d8c99363db
Patch modifications
2016-09-18 08:35:54 -04:00
40286f49c2
Merge branch 'patch' of github.com:jamesagnew/hapi-fhir into patch
2016-09-17 23:40:54 -04:00
6e97936eca
More work on patch
2016-09-17 16:55:21 -04:00
e1b41d8bf5
Add flag to CLI tool
2016-09-16 13:16:46 -04:00
d41b412dee
Fix #440 - Don't depend on Saxon
2016-09-08 15:56:15 -04:00
dbaff992b0
Fix test
2016-09-08 14:22:47 -04:00
6357c38180
Support _has param in conditional URLs in JPA
2016-09-08 13:14:15 -04:00
202a1ea885
Fix web testing UI regression
2016-09-06 17:59:04 -04:00
906bcfb803
Version bump to 2.1
2016-08-30 10:55:55 -04:00
d27aad487e
Bump to 2.0 release
2016-08-30 10:50:04 -04:00
333aa0afde
Correctly update versions on transactipn update
2016-08-28 22:56:59 -04:00
ddc0abe4ed
Update to final STU3 ballot definitions
2016-08-26 07:55:10 -04:00
acdbdc0be7
Fix #426 - Extension with datatype of ID failed to parse
2016-08-25 07:32:37 -04:00
db17342149
Fix tests
2016-08-23 06:52:47 -04:00
1eb4dd06be
Fix tests
2016-08-22 22:03:02 -04:00
35a890db34
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-08-22 07:42:02 -04:00
b70165630a
Improve partial string handling in JPA server
2016-08-22 07:05:49 -04:00
da8abca1ff
Add custom extension example
2016-08-21 10:24:42 -07:00
eee168ced6
Add support for conditional operations to AuthorizationInterceptor
2016-08-15 13:35:50 -04:00
f64337b651
Fix test
2016-08-14 13:22:42 -04:00
b0d19c3a65
Fix #423 - Encode custom types with custom type fields correctly
2016-08-14 13:05:16 -04:00
779b66c5e4
Add unit test
2016-08-11 20:55:11 -04:00
ac2d55139d
Add option to upload-terminology for security header
2016-08-09 15:38:30 -04:00
3e7cd153fd
Update DSTU3 definitions to latest
2016-08-05 12:36:41 -04:00
41b58108f2
Bump version dependencies and return 200 for conditional delete with no matches
2016-07-25 08:46:02 -04:00
fd4979f56a
Fix compile issues
2016-07-24 11:11:27 -04:00
ca97c0d000
Fix #401 - Don't clear fullUrl on stored bundles
2016-07-24 11:02:20 -04:00
7dbd5a21ca
Fix tests
2016-07-24 09:20:54 -04:00
350e82b6cf
Fix #403 - Allow references to keep versions when encoding
2016-07-23 18:48:00 -04:00
c532d1a25b
Add test for #410
2016-07-21 07:35:15 -04:00
8f7a374a25
Auto-detect disabled hibernate search
2016-07-18 16:56:41 -04:00
196c11bfa2
Use new style mimetypes but keep supportuing the old ones as well
2016-07-17 18:35:06 -04:00
0b69367b11
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-07-13 09:22:19 -04:00
fa37afb61f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-07-12 21:44:52 -04:00
ed941a116b
Update to use GSON
2016-07-12 21:44:40 -04:00
c550681aeb
Update defs to 1.5.0 versions
2016-07-12 18:29:10 -04:00
c3e9f618eb
Version bump to 2.0-SNAPSHOT
2016-07-12 11:12:07 -04:00
acaf2135c5
Finalize 1.6 release
2016-07-06 07:29:20 -04:00
83c2e7d1fb
Another test fix
2016-07-05 18:22:08 -04:00
d63e289cbe
Validation fixes
2016-07-05 16:56:06 -04:00
344b1256ce
Add tests
2016-07-04 18:32:57 -04:00
32bdd14639
Work on term service
2016-07-02 17:14:36 -04:00
4a49e5b7f9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-07-01 14:31:25 -04:00
b8f1f39ead
Add tests and get :below queries working for built-in code systems
2016-07-01 08:51:47 -04:00
7ef48413c4
Term service enhancements
2016-06-30 17:45:41 -04:00
1eb1dc7e36
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-29 09:56:12 -04:00
ea99672e6c
Add tests for term svc
2016-06-29 09:56:05 -04:00
9b6f548970
Work on term service, and allow child classes when serializing
2016-06-29 08:08:42 -04:00
8c8b7b8234
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-27 08:24:33 -04:00
cf0ac8fc04
Work on term service
2016-06-27 08:22:09 -04:00
40a65fb2cc
Try to fix test
2016-06-27 05:55:53 -04:00
c2dbcc7ff0
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-26 23:12:26 -04:00
e9cb518012
Fix teerm sevice indexing
2016-06-26 23:10:02 -04:00
556058a7b7
Tests passing
2016-06-25 10:55:31 -04:00
db0a208927
Work on terminology importing
2016-06-24 18:40:44 -04:00
2e8c20dc83
More work on terminology services, and add support to operations to AuthorizationInterceptor
2016-06-20 07:19:08 -04:00
36505c60d8
More work on term service importing
2016-06-19 10:35:27 -04:00
a7cbb5c022
More test coverage
2016-06-18 13:32:45 -04:00
b3d8d453de
Improve test coverage and clean up UnclassifiedServerFailureException processing
2016-06-18 10:37:43 -04:00
785ce1deb9
Remove some dead code and improve test coverage
2016-06-17 07:40:17 -04:00
dcecde5db9
Improve test coverage
2016-06-16 22:52:10 -04:00
9392d8c104
Add logging to test
2016-06-15 22:30:03 -04:00
1683cf8cef
Switch to jacoco
2016-06-15 17:34:50 -04:00
e2f1beef2c
Fix some tests
2016-06-14 22:03:24 -04:00
f3dcc3e893
Add lots of tests
2016-06-14 17:57:08 -04:00
1166a2ee67
Work on support for _at parameter in history operation
2016-06-13 07:31:25 -05:00
23840ecb7a
Fix some tests
2016-06-11 06:43:27 -05:00
1d2aee3dbe
Try to fix tests
2016-06-10 22:43:00 -05:00
fd8d67b9cd
Fix more unit tests for #380
2016-06-10 18:57:44 -05:00
a3484f84c1
Work on #381 - Still need to apply these changes to STU3 type
2016-06-09 21:48:53 -04:00
0a2b4290ed
Fix #370 - Validation failure when validating certain STU3 resources
2016-06-08 14:21:18 -07:00
7e57aed5d6
Significant performance enhancements for context startup
2016-06-06 11:15:11 -07:00
99568a4b30
Clean up client fluent param types and add some test coverage
2016-06-05 11:33:43 -04:00
87eabe6bf8
More work on terminology server
2016-06-05 09:40:06 -04:00
f4b9c6423c
Work on terminology service
2016-06-04 12:16:33 -04:00
32cebb2a9f
More terminology service work
2016-06-03 08:16:40 -04:00
1b8843aa5e
More work on terminology service
2016-06-01 09:10:47 -04:00
820d1e0165
Fix build
2016-05-30 06:38:40 -04:00
f45ad117fe
Improve error messages for invalid validate request
2016-05-29 22:23:30 -04:00
a306e3136f
Try to fix build
2016-05-29 18:45:42 -04:00
9fe9cc1e4c
Sync RI and fix tests
2016-05-29 17:52:26 -04:00
eb3b656a5f
Syn RI - Build still failing :(
2016-05-28 12:53:59 -04:00
fd7f9a9b98
Auto close contextx in JPA tests
2016-05-27 10:27:32 -04:00
cd2af98064
Add method to upload SCT to JPA server
2016-05-27 08:56:36 -04:00
69266dc7d0
Add terminology uploader
2016-05-26 22:18:12 -04:00
badcbfc0ee
More work on SNOMED CT terminology loader
2016-05-26 07:53:36 -04:00
35ffbf1568
Sync DSTU2 validator with RI
2016-05-24 09:22:16 -04:00
efe9cd1dd1
Work on term svc
2016-05-24 06:34:06 -04:00
635398a754
Update reindexing
2016-05-22 18:22:49 -04:00
de65184afb
Fix tests
2016-05-21 20:52:37 -04:00
3d8776f6ed
Fix #363 - Allow remote references in JPA resources
2016-05-21 12:58:04 -04:00
81d68b07f8
Work on term svc
2016-05-19 06:15:58 -04:00
6c3446dee1
Fix build
2016-05-17 11:30:57 -04:00
ddb35d0faa
Merge branch 'term_svc' of github.com:jamesagnew/hapi-fhir into term_svc
2016-05-17 09:05:47 -04:00
78fa6eaeaf
More work on terminology service
2016-05-17 09:05:37 -04:00
7942d69d5d
Accept conditional updates with _id as parameter
2016-05-16 19:11:25 -04:00
c7d191dc38
Fix all tests
2016-05-14 16:59:31 -04:00
309b67c010
Fix tests
2016-05-13 19:37:49 -04:00
d5e2170595
Don't discard _count from parameters when method has @Count
2016-05-13 19:13:39 -04:00
563f4e4c46
Treat date eq params correctly
2016-05-13 18:49:41 -04:00
abd8bc2f14
Work on term svc
2016-05-13 17:40:56 -04:00
c94f4bb19b
Work on term services
2016-05-11 06:30:45 -04:00
3e77d3e37e
Add _has support (this is an experimental parameter being tested)
2016-05-10 11:47:30 -04:00
bca8589177
Index DSTU3 timing datatypes
2016-05-09 16:32:31 -04:00
975dfe4fa4
Fix build
2016-05-09 13:10:12 -04:00
061243b5c7
Allow delete bundle to contain multiple deletes for the same resource
2016-05-08 13:11:55 -04:00
e1ab2856e0
Fix build
2016-05-08 10:29:08 -04:00
adeb15809b
Fix validator for documents
2016-05-07 16:47:34 -04:00
af2b702aa4
Fixes from Montreal connectathon
2016-05-07 14:24:33 -04:00
4ae4b1a8d8
Support composite parametrs with quantity type in JPA
2016-05-06 18:43:07 -04:00
82c1e687fd
Fix NPE in LoggingInterceptor
2016-05-04 11:48:50 -04:00
7429a382dd
Fix test
2016-05-03 10:12:03 -04:00
cce0ce6b8e
Add parser for URL parameters to avoid Servlets using ISO-8859-1 instead of UTF-8
2016-05-03 08:58:56 -04:00
dcd32b6127
Correctly handle search parameter target types in JPA
2016-05-03 07:03:44 -04:00
3e8638a65f
Fix tests
2016-05-02 19:03:36 -04:00
dd95a52240
Get fluentpath entirely working in JPA
2016-05-02 18:04:42 -04:00
804149205a
Work on getting tests passing
2016-05-02 11:42:55 -04:00
5086145132
Add targets to search parameters
2016-05-02 08:10:43 -04:00
2bc1950bc1
JPA server transactions sometimes created an incorrect resource reference if a resource being saved contained references that had a display value but not an actual reference. Thanks to David Hay for reporting!
2016-04-29 09:21:12 -04:00
d45a9b67dc
Allow forced IDs to be reused between resource types
2016-04-24 19:24:55 -04:00
38e80531bb
Bump version to 1.6-SNAPSHOT
2016-04-22 07:05:05 -04:00
dd3f1dd33c
Fix #345 - ResponseValidatingInterceptor throws an exception with response has no content
2016-04-22 07:04:14 -04:00
246a7c5e16
Fix test
2016-04-21 07:51:14 -04:00
a8b121d868
Try to fix tests
2016-04-20 09:03:43 -04:00
81fa46820a
Correctly support _summary=search option
2016-04-19 21:58:20 -04:00
59c44a3b0b
More test fixes
2016-04-17 20:57:27 -04:00
12a66a9438
More test fixing
2016-04-17 20:02:50 -04:00
f3a41570d3
Try to get tests workign on Travis.. yet again
2016-04-17 19:25:11 -04:00
846e216c04
Fix tests
2016-04-17 12:58:36 -04:00
3f2b5fdeb7
Get security interceptor working
2016-04-16 10:22:43 -04:00
533c0c87ab
Fix tests
2016-04-14 09:14:32 -04:00
8a37ed3b59
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-14 06:38:08 -04:00
0780b7e472
Add tests
2016-04-14 06:36:29 -04:00
a090f5481f
Try to get cobertura working
2016-04-13 10:33:58 -04:00
d7c683f6b9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-11 09:08:34 -04:00
2f37015d57
Clean up parsers so that elements are always encoded according to their order in the structures that contain them
2016-04-11 08:36:12 -04:00
88157fe1a6
Test data uploader fixes
2016-04-08 16:31:42 -04:00
8588bdfd1f
Fix #331 - Don't split paths on or within words
2016-04-07 10:53:49 -04:00
b81a343f5d
Add support for JPA searches with _tag:not=foo
2016-04-07 09:50:05 -04:00
ad34e38dee
Work on _tag:not=foo
2016-04-06 07:55:42 -04:00
0e8962d18c
Add license headers
2016-04-05 16:34:55 -04:00
18b3d0df65
Update to DSTU3 Montreal definitions
2016-04-03 18:14:31 -04:00
19c00a3620
Try to reduce memory use for Travis
2016-04-01 17:09:30 -04:00
21b42acc94
Update licenses
2016-03-29 13:01:51 -04:00
01b62a9e11
Add test for #316
2016-03-28 21:00:53 -04:00
46ba27ec8f
Work on security interceptor
2016-03-28 20:51:27 -04:00
bba9f5b584
Try to avoid deadlocks in complicated queries
2016-03-27 09:38:01 -04:00
1aebff9a43
Add RES_ID indexes to help performance searchin across large datasets
2016-03-27 08:59:39 -04:00
f9fa6265df
Correctly handle JPA search by token with system but no code
2016-03-25 16:20:43 +01:00
c8173810f4
Attempt to correct build issues
2016-03-16 18:00:57 -04:00
3922ff026e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-03-16 17:42:54 -04:00
c80b29fc45
Fix test
2016-03-16 08:13:35 -04:00
9aa7eea274
Add mode to parser to force it to not encode certain elements when serializing
2016-03-16 07:53:21 -04:00
9c8d9db7e6
Use separate index columns
2016-03-15 10:35:24 -04:00
96d6fa1b8a
Work on terminology services
2016-03-15 10:03:22 -04:00
00ced6a652
Improve performance of _lastUpdated queries in JPA server
2016-03-14 06:31:45 -04:00
6ddf91d9e2
Correctly handle extended operation in annotation based client where the
...
response is a raw resource and not a Parameters resource
2016-03-12 15:10:02 -05:00
ce253bed70
Properly deserialize bound codes
2016-03-12 13:23:55 -05:00
232afee955
Improved error messages for #305
2016-03-11 07:56:00 -05:00
ed92f64e52
Fix #305 - Don't allow update resource body IDs to be missing or incorrect
2016-03-10 07:44:05 -05:00
990ef16f78
Adding a test
2016-03-10 06:56:51 -05:00
3897167518
Return correct bundle type on $everything operation
2016-03-09 23:11:40 -05:00
6f79f6c5e2
Keep the complete resource history in the history table, including the
...
current version
2016-03-09 15:34:49 -05:00
3bfcb57783
Page JPA search results to the database
2016-03-07 07:23:44 -05:00
8de41ca8b4
Attempting to reduce memory usage during tests
2016-03-06 14:38:18 -05:00
99a4b2c29e
Refactor JPA SearchBuilder
2016-03-05 20:46:04 -05:00
5078b6aebe
Remove unneeded files from Git
2016-02-28 14:06:59 -05:00
1da5855c9c
Add Eclipse files to git
2016-02-28 14:02:29 -05:00
3f363eff9f
Fix compile issues from merge
2016-02-27 09:42:15 -05:00
7fdbee6f21
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-26 18:20:32 -05:00
39f6420066
Start working on compartment support
2016-02-26 18:16:35 -05:00
1ba0ae3960
Support inline match URL references, per Simone's requast for the next
...
connectathon
2016-02-23 13:12:30 -08:00
6cc60624c6
Fix comment
2016-02-17 08:50:35 -05:00
4975d212fa
Add userdata map to interceptors which can be passed around
2016-02-17 08:05:55 -05:00
9b304748ad
Work on terminology service
2016-02-16 21:29:00 -05:00
1f875c1ca6
Try to fix build
2016-02-15 11:22:19 -05:00
c1141eb18f
Reorganize how search param prefixes are handled and modelled based on new DSTU2 style prefixes
2016-02-15 10:05:39 -05:00
23f9292b50
Add support for comments in XML and JSON parsing/encoding
2016-02-08 22:05:17 -05:00
f21851099c
Version bump
2016-02-08 13:59:09 -05:00
68b816dce7
Prepare for 1.4 release
2016-02-03 16:56:32 -05:00
e0e52f96c6
Version bump to 1.4 (finally!)
2016-02-03 15:25:32 -05:00
32daeb6f58
Switch DSTU2.1 to DSTU3 per FMB's decision
2016-02-01 08:55:58 -05:00
914f615b8e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-28 11:35:16 -05:00
7ed14d538a
Remove warning
2016-01-24 14:53:40 -05:00
944afc2785
Add better constructors for date types
2016-01-20 07:40:57 -05:00
f9960b22d5
Clean up validation
2016-01-15 18:44:28 -05:00
d290110126
Fix validation
2016-01-15 18:02:20 -05:00
589059256f
Correct issues uncovered during connectathon
2016-01-11 07:42:13 -05:00
552842e547
Validator enhancements
2016-01-08 16:23:27 -05:00
e436254c32
More fixing build
2016-01-08 09:07:59 -05:00
bf2e12e22c
More tweaking for stupid travis
2016-01-08 08:26:53 -05:00
fbcf366ffa
Try to reduce unit test memory for Travis
2016-01-07 23:03:54 -05:00
cabdde8914
Still trying to get travis working!
2016-01-07 21:13:17 -05:00
50a9995c55
Validator fixes
2016-01-07 18:37:15 -05:00
479da24cfb
Bump license files
2016-01-07 08:50:07 -05:00
a54cb06c03
More travis cleanup
2016-01-06 14:02:20 -05:00
0491dbe654
More travis
2016-01-06 10:25:40 -05:00
7005cd52d9
Performance tweaks to the validator and get the DSTU2.1 endpoint working
...
with validation
2016-01-04 17:57:00 -05:00
685bd9345b
Add request/response validator interceptors
2016-01-03 21:52:11 -05:00
ccc71c3bd3
Tests should be passing now
2016-01-03 00:19:16 -05:00
5789db8743
Remove dependency on cobertura at compile time
2016-01-02 10:55:52 -05:00
718a26671f
DSTU2.1 structures working
2016-01-01 16:59:19 -05:00
056900f324
Lots more work on DSTU2.1 structures
2015-12-30 11:27:12 -06:00
7692e5d714
More work on DSTU2.1 structs
2015-12-22 09:32:06 -05:00
2469aa3725
Lots of DSTU2.1 structure work
2015-12-20 23:35:47 -05:00
aaf85f2323
Lots of work on DSTU2.1 structures
2015-12-20 09:29:52 -05:00
a623003a56
Fix #240 - Support target resource type in server _include and _revinclude values
2015-12-14 21:50:35 -05:00
9ef0498775
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-12-14 10:56:33 -05:00
97d6d09663
Work on #240 - Not yet working in JPA
2015-12-14 08:17:33 -05:00
117f9eb977
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-12-10 08:24:30 -05:00
85ec9d9264
Work on 2.1 structures
2015-12-10 08:24:12 -05:00
83b664e55b
Get travis building again
2015-12-04 08:03:16 -05:00
67eb06665e
Work on test indexing
2015-12-03 22:41:37 -05:00
8ed9ca83af
Fix build
2015-12-03 21:52:40 -05:00
e176d9a4b7
Try to fix travis
2015-12-03 20:54:48 -05:00
547b5290a4
Update resource defs
2015-12-01 18:35:24 -05:00
fcdf80c6a7
Only do one pass of validation during a JPA transaction
2015-11-29 16:48:57 -05:00
d47e0e5e77
Add DSTU2.1 resources
2015-11-29 11:43:09 -05:00
e6b47855e6
Merge branch 'master' of git://github.com/petervanhoute/hapi-fhir into petervanhoute-master
2015-11-27 14:59:53 -05:00
14e326c2bd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-11-26 06:57:08 -05:00
9c9ffe1fb7
Remove dependency on JDK 7
2015-11-26 06:56:52 -05:00
2f12c9ed01
Bump version to 1.4-SNAPSHOT
2015-11-15 20:11:05 -05:00
5d13e660b0
Add header file
2015-11-15 13:56:59 -05:00
f9f33f059b
Version bump to 1.3
2015-11-15 12:53:02 -05:00
8c087f053a
Cleanup for #254
2015-11-15 12:52:46 -05:00
c516050716
Merge pull request #254 from cmikeb1/master
...
Added the ability to wire the JPA conformance providers
2015-11-15 12:47:55 -05:00
e7e820ee52
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-11-08 11:14:22 -05:00
dfced5b2a5
Fix tests
2015-11-08 11:13:58 -05:00
35a6b4dbf0
Fix #253 - Process JPA entries in the correct order
2015-11-08 09:36:04 -05:00
3ff6822599
Added the ability to wire JpaConformanceProviderDstu1 & JpaConformanceProviderDstu1 with spring, as accommodated by [RestfulServer.java]( d3685e72ba/hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/RestfulServer.java (L1313))
2015-11-06 21:20:06 -07:00
65c4250ed3
Update android distribution
2015-11-06 18:53:54 -05:00
4545b4fb7f
Don't create a new version when reindexing resources
2015-11-04 08:26:33 -05:00
1fb9f02d14
Work on fulltext suggestions
2015-11-03 21:34:35 -05:00
3fc7a16735
Fulltext searching works
2015-11-02 08:12:36 -05:00
a6d4de1f3e
Add support in JPA for _content and _text for $everything operation
2015-10-31 17:09:32 -04:00
2cc88d76eb
Cleasn up JPA interceptors
2015-10-29 16:44:51 -04:00
d3685e72ba
Fix #241 and fix #247 - Don't encode UUID IDs on resources, and preserve
...
bundle type when retrieving pages
2015-10-29 15:38:19 -04:00
f7dab9ff64
Doc updates
2015-10-29 07:51:59 -04:00
30ab0203a3
Refactor search capability in JPA out of resource specific module
2015-10-28 08:44:52 -04:00
65598c200e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-28 07:39:18 -04:00
f3552015cc
Work on splitting out search in JPA
2015-10-27 20:23:49 -04:00
43c1212840
Revamp the interceptor framework for JPA
2015-10-27 18:34:27 -04:00
c31900b827
JPA performance tweaks: Avoid unneccesary fulltext index pass during transaction and tag lookup
2015-10-25 12:18:21 -04:00
8d515feb6d
Fix #242 - Allow compartment and read method to coexist for server
2015-10-21 11:58:19 -04:00
d838a2bd4b
Reduce JPA uri param length from 256 to 255 to accomodate MySql
2015-10-21 10:37:56 -04:00
06bdce8bbc
Subscription CLI updates
2015-10-20 18:21:49 -04:00
5edd290013
More work on JPA server transactions
2015-10-20 10:52:29 -04:00
ae416dcd62
Improve nexted search/read handing in transactions in JPA server
2015-10-20 10:35:18 -04:00
9b5598e2ab
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-19 20:22:11 -04:00
6729ea0479
Work on support for transaction searches with paging in JPA
2015-10-19 20:21:06 -04:00
938a251ae9
Cleanup tests for java config in JPA
2015-10-19 20:19:40 -04:00
9c0f6f993d
Finish converting Spring from XML to Java config
2015-10-17 09:39:27 -04:00
6c321b83c8
Get examples working with Java config
2015-10-16 15:41:28 -04:00
eeac5e6ac0
Java config almost working
2015-10-16 08:57:07 -04:00
febb15b78e
Work on java config
2015-10-15 17:21:20 -04:00
e1eed8ce5e
One test works..
2015-10-15 09:10:06 -04:00
7e2d486d17
Working on java config
2015-10-15 08:27:58 -04:00
e9d18af5d9
Bump library versions
2015-10-14 18:11:52 -04:00
0430eb1626
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-13 12:13:43 -04:00
6d93cbcaae
Get content search working correctly
2015-10-13 09:18:34 -04:00
cb886c2975
Remove unused BeanUtils
2015-10-12 19:54:23 -04:00
0ab8ee386f
Add documentation for CLI
2015-10-12 18:47:49 -04:00
b827823004
Improve efficiency of JPA queries with _lastUpdated
2015-10-12 09:32:25 -04:00
8c0b665565
Fix subscription issue
2015-10-10 10:06:41 -04:00
16989435b0
Don't export a _format on paging links if the request didn't have one
2015-10-09 17:42:45 -04:00
588016e406
Merge branch 'master' into fulltext
2015-10-09 09:15:48 -04:00
b4c86d033e
More work on fulltext search and add a failing test for subscriptions
2015-10-09 09:12:41 -04:00
e29e10450c
Add validation
2015-10-07 18:12:38 -04:00
ad868038a8
Work on Lucene searching
2015-10-07 09:01:32 -04:00
3050d4776c
Merge branch 'master' into fulltext
2015-10-06 19:42:05 -04:00
9fef4f6bab
Allow valueset operations to work against type in JPA
2015-10-06 18:53:09 -04:00
a337528e1c
Refactor ValueSet JPA RP to use optional ID params
2015-10-06 13:01:32 -04:00
b62eb1168c
Allow server operations to work at the type level
2015-10-06 11:45:49 -04:00
50c43bdb29
Fix tests
2015-10-06 09:08:25 -04:00
3d330de8ef
Fix compile issue
2015-10-06 06:57:55 -04:00
8e8db1801c
Start work on FT search
2015-10-06 06:46:51 -04:00
0958ab6f16
Refactor $everything operations on JPA so that they perform better
2015-10-05 16:49:50 -05:00
80575b5380
Generic client now allows search by URL
2015-10-05 15:30:30 -04:00
43aad1eb98
Properly support chains in JPA conditional URLs
2015-10-04 15:38:58 -04:00
48d56b4722
Fix connectathon discovered issues
2015-10-03 23:52:30 -04:00
c666b9c196
Fix compile issues
2015-10-03 16:11:47 -04:00
e7e8f8dd81
Use correct status codes for failed deletes, and support multi delete in
...
JPA
2015-10-02 18:18:54 -04:00
aa32e6f0a9
Improve ValueSet operations in JPA
2015-10-02 12:37:56 -04:00
12d95bf43c
Support patient and encounter $everything operations at the type level
...
in JPA
2015-10-02 08:09:17 -04:00
119a4f36d9
Add error checking and better handling for match URLs in JPA server
2015-10-01 16:54:34 -04:00
900c93949a
Work on subscriptions, and correct indexing of codes in JPA
2015-10-01 08:56:17 -04:00
c385384269
More work on subscriptions
2015-09-30 08:31:38 -04:00
f9e4a3e1b5
Fix #233 - elementQuantity gets incorrectly encoded as elementDuration
2015-09-29 19:41:31 -04:00
04764ed07e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-09-29 17:55:59 -04:00
bc910a1d4c
Work on dynamic subscriptions
2015-09-29 17:55:49 -04:00
ca8c257833
Support lastupdate filtering and sorting on JPA everything operation
2015-09-29 13:24:33 -04:00
1cc6a05273
FIx validation for resources using v2 tables
2015-09-29 10:51:36 -04:00
79047ef6ab
Add test for #226 and refactor $everything into DAO
2015-09-28 14:09:15 -04:00
e7ad9a96be
Fix build
2015-09-28 10:40:13 -04:00
9492744018
Work on subsciprions
2015-09-28 09:06:57 -04:00
f818a3b478
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-09-26 08:49:37 -04:00
41f01b322f
Work on subscriptions
2015-09-26 08:49:06 -04:00
51a046ea26
Handle sort by number, uti and token
2015-09-25 16:53:22 -04:00
291fd21836
Fix build
2015-09-24 15:12:06 -04:00
4ff7452c9b
Fix #227 - JPA server should reject resources with a reference that
...
points to an incorrectly typed
resource (e.g. points to Patient/123 but
resource 123 is actually an Observation) or points
to a resource that is not valid in the
location it is found in (e.g. points to Patient/123 but
the field supposed to reference an
Organization)
2015-09-24 14:47:04 -04:00
072c1ece87
Send Accept header on client requests, and allow string responses in
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QuestionnaireResponse validator for questions of type OPENCHOICE
2015-09-24 13:40:07 -04:00
70eff0dc7f
Improve error message when $meta-add and $meta-delete are called with no meta element in the
...
input parameters. Also improve OperationOutcome rendering in narrative generator.
2015-09-24 08:36:25 -04:00
835abdfbea
Fix compile issues
2015-09-24 07:46:35 -04:00
cdc1519a55
Work on subscriptions
2015-09-24 07:01:04 -04:00
a15ed8e944
Work on subscriptions, and correct an issue with DateRangeParam where comparators get ignored
2015-09-23 08:36:11 -04:00
ef6a9302c0
Fix tests
2015-09-22 22:10:46 -04:00
ec8b3b68f6
Work on subscription
2015-09-22 08:06:23 -04:00
36d8ed98d2
Test to confirm #222 not an issue
2015-09-21 21:37:50 -04:00
f2118df9b8
FIx #225 - Support and/or in JPA on _id and _language params
2015-09-21 21:29:04 -04:00
04c2cce13f
Start working on JPA subscriptions
2015-09-21 09:08:19 -04:00
8fee057de3
Bump Spring and Hibernate versions
2015-09-20 10:18:33 -04:00
d59c0ff404
Correctly index reference paths with multiple paths, and don't store duplicate indexes in JPA
2015-09-20 08:23:03 -04:00
70e942e9f8
Version bump to 1.3-SNAPSHOT
2015-09-19 11:00:57 -04:00
effe139325
Finalizing 1.2 release
2015-09-16 11:46:17 -04:00
31934ff582
Version bump to 1.2
2015-09-16 07:09:03 -04:00
73121e222c
Add tests
2015-09-15 14:11:55 -04:00
2961d2e91b
POM cleanup
2015-09-15 10:28:09 -04:00
ff5d14dade
Return HTTP 412 for validation failure in JPA DSTU2
2015-09-15 09:09:07 -04:00
b1df85eb37
Validation now working completely in JPA server
2015-09-15 08:27:49 -04:00
c96d5efe1f
Work on updating validator
2015-09-14 08:22:43 -04:00
d0bac3d419
Work on CLI tool
2015-09-13 22:06:31 -04:00
780fc871cb
It should not be possible to search for deleted resources using the _tag, _id, _profile, or _security search parameters
2015-09-13 09:42:41 -04:00
48ee2cbee8
JPA server now correctly suppresses contents of deleted resources
...
in history
2015-09-12 09:45:12 -04:00
2c1ca358fe
Work on CLI
2015-09-11 16:13:40 -04:00
c534fb9604
Hopefully tests should pass now - Not using profile datatypes in encoded
...
choice names has been a pain!
2015-09-08 14:00:11 -04:00
4dfecbdc74
pom refactoring
2015-09-08 08:14:55 -04:00
7217458681
Allow storage of Conformance resources in JPA
2015-09-07 21:31:10 -04:00
a4d973696e
Updating pom.xml files for dstu2.
2015-09-03 14:36:37 -04:00
f3e44eea3b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-09-03 08:08:13 -04:00
ae177b52e8
Populate Bundle.entry.fullUrl
2015-09-02 13:42:59 -04:00
6a2045fe12
Fix build
2015-09-02 13:00:08 -04:00
901cef837b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-09-02 11:27:49 -04:00
fa76071bd3
Return last updated time and version ID for instance $meta operation
2015-09-02 11:26:40 -04:00
875ad3b5f9
Correct tag handling for DSTU2
2015-09-02 07:46:52 -04:00
517222d183
Fix tests
2015-09-01 18:24:32 -04:00
febae3f07d
Add tests
2015-09-01 17:48:20 -04:00
97e6073665
Support URI (and prepare for lat/lon search params) in JPA server, and
...
don't store duplicate tags
2015-09-01 17:02:35 -04:00
71c28b5709
More fix build
2015-08-31 09:40:44 -04:00
fc36dabc68
Fix build
2015-08-31 09:23:21 -04:00
a9f978a8a2
Udate to latest DSTU2 definitions
2015-08-31 08:20:24 -04:00
eaa2519696
iAdd some tests
2015-08-28 18:00:32 -04:00
bd13b53099
Fix #212 - Dont accept invalid IDs but do accept IDs starting with a
...
number
2015-08-28 15:36:56 -04:00
073fa47807
Add support for _include:recurse behaviour
2015-08-27 19:44:51 -04:00
df4d371edc
Add profile and security params for generic search
2015-08-24 15:23:28 -04:00
bec43b3fdc
Fix tests
2015-08-24 08:29:02 -04:00
60339d6f93
Fix #209 - _revinclude results from JPA server should have a Bundle.entry.search.mode of "include" and not "match". Thanks to Josh Mandel for reporting!
2015-08-23 22:25:25 -04:00
11376024fa
Fixing test related to summary and elements mode
2015-08-23 21:51:46 -04:00
7645c240f4
Get instance validator working across FHIR versions
2015-08-20 15:27:24 -04:00
ddc66d3ed0
Add support for $validate-code in JPA server
2015-08-20 14:27:19 -04:00
11f5aeebd9
Clean up the build and hopefully close #206
2015-08-19 11:49:00 -04:00
4d04b9cc6a
Fix #206 - Don't require hl7org structures to start JPA server
2015-08-19 07:47:45 -04:00
c2fba2ce21
More work on interceptors
2015-08-17 18:35:51 -04:00
ac564a54d6
Documentation cleanup
2015-08-17 07:57:20 -04:00
330dbde983
Add new interceptor hook for auditing
2015-08-16 22:09:01 -04:00
77f151901a
Get coded valuesets working once again for DSTU2 resoruces
2015-08-13 17:58:31 -04:00
4d8efb6455
Merge branch 'dstu2_final' of github.com:jamesagnew/hapi-fhir into dstu2_final
2015-08-09 17:38:19 -04:00
28d35fe1fe
Add tests
2015-08-09 17:28:29 -04:00
b28dba3540
Merge branch 'dstu2_final' of github.com:jamesagnew/hapi-fhir into dstu2_final
2015-08-09 17:20:30 -04:00
12735a1446
Handle contact search params better
2015-08-09 17:17:53 -04:00
24634880db
Update for QA version of DSTU2
2015-08-09 11:18:04 -04:00
5b09a3d2b6
Add trasnaction BATCH support to JPA
2015-07-31 09:29:25 -04:00
d9d192cc04
Merge branch 'master' into dstu2_final
2015-07-30 22:34:45 -04:00
ab2129d651
Implements support for _tag in JPA server and client
2015-07-30 07:47:37 -04:00
e457366ffa
Start work on upgrading DSTU2 to QA version
2015-07-25 11:56:47 -04:00
f2bf199ac7
Fix build and sync RI
2015-07-21 10:58:02 -04:00
56a4c1b04b
Add serialization support and fix build regression
2015-07-21 09:45:53 -04:00
48917684fd
Finish off #152
2015-07-21 08:28:40 -04:00
93c04bd939
Another unit test for #198
2015-07-20 21:12:00 -04:00
61cb60b293
Operations which are not resource type specific were not showing up in REST server's conformance
2015-07-18 18:44:46 -04:00
5a450227b2
Fix unit test issues
2015-07-18 17:05:10 -04:00
22ffa16bb3
Fix examples
2015-07-18 16:42:59 -04:00
626f4677e7
Fix #198 - Sorting should only sort on the individual parameter searched on, not all params of the same type
2015-07-18 15:29:24 -04:00
41283d4ed4
Add $get-resource-counts operation to JPA server
2015-07-17 18:28:47 -04:00
3bdf846a3d
Improve error messages in JPA server
2015-07-16 22:47:41 -04:00
2fc0d4c7a2
Clean up exception handling in server, and add QuestionnaireAnswers validation for JPA server
2015-07-16 20:16:51 -04:00
901c5c29cf
Version bunp for 1.2
2015-07-14 18:08:06 -04:00
jamesagnew
Jeff Chung
Kyle Meadows
Jiajing LIANG
Alvin Leonard
michael.i.calderero
Karl M. Davis
Michael Lawley
Diederik Muylwyk
Joel Schneider (NMDP)
sekaijin
Waveren, Robbert van
C. Mike Bylund
miantorno